View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4617_high_5 (Length: 434)
Name: NF4617_high_5
Description: NF4617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4617_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 366; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 19 - 424
Target Start/End: Complemental strand, 7368930 - 7368526
Alignment:
| Q |
19 |
ccaccaacatccacaaagcaagagcaagctcctcctcgttcctctctttgattttttatgctcaatttataggcttcaattccctcaattgataaacatt |
118 |
Q |
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| T |
7368930 |
ccaccaacatctacaaagcaagagcaagctcctcctcgttcctctctttgattttttgtgctcaatttataggcttcaattccctcaattgataaacatt |
7368831 |
T |
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| Q |
119 |
tgtcaatgggataaatctgagaaatatggagtaaatagatacaagtgcatttagtaaatgtgtctacaaagaaaatacaatagttgtagaaacttgaaga |
218 |
Q |
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| T |
7368830 |
tgtcaatgggaaaaatctgagaaatatggagtaaatagatacaagtgcatttagtaaatgtgtctacaaagaaaatataatagttttagaaacttgaaga |
7368731 |
T |
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| Q |
219 |
gggcaggggtgaaggaccccataaatcagcatgaataacttcaaaaggattagaatgggtttacctaggcaacaaaaattacacaaaacgggcaaatttt |
318 |
Q |
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| T |
7368730 |
gggcaggggtgaaggaccccataaatcagcatgaataacttcaaaaggattagaatgggtttacctaggcaacaaacattacacaaaacgggcaaatttt |
7368631 |
T |
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| Q |
319 |
tattgatgaaacatattgtattttataacggctgcattactaatttaataacatttatatgagaacggccaagtctacaacaacaacaataaagtcttat |
418 |
Q |
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| T |
7368630 |
t-ttgatgaaacatactgtattttataacggctgcattactaatttaataacatttatatgagaaaggccaagtctacaacaacaacaataaagtcttat |
7368532 |
T |
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| Q |
419 |
ctcatt |
424 |
Q |
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| T |
7368531 |
ctcatt |
7368526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 151 - 205
Target Start/End: Complemental strand, 7377529 - 7377476
Alignment:
| Q |
151 |
aaatagatacaagtgcatttagtaaatgtgtctacaaagaaaatacaatagttgt |
205 |
Q |
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| T |
7377529 |
aaatagatacaagtg-atttagaaaatgtgtcaagaaagaaaatacaatagttgt |
7377476 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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