View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4617_high_7 (Length: 374)
Name: NF4617_high_7
Description: NF4617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4617_high_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 11 - 357
Target Start/End: Original strand, 4484267 - 4484614
Alignment:
| Q |
11 |
aatgagattatttataatgaaatatttatattctttacgttgaaaagtgagaatgaaataaataattgttnnnnnnn-gagttccccacttctcaacatt |
109 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
4484267 |
aatgagattatttataaagaaatatttatattctttacgttgaaaagtgagaatgaaataaataattgttaaaaaaaagagttccccacttctcaacatt |
4484366 |
T |
|
| Q |
110 |
tgatgtatgtgagtttcagcactagactctttgcaaagnnnnnnnttgagaaattcaaacctataaatcataggaaagtgaactataggttttcannnnn |
209 |
Q |
| |
|
|||||||||||||||| |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4484367 |
tgatgtatgtgagttttagcattagactctttgcaaagaaaaaaattgagaaattcaaacctataaatcataggaaagtgaactataggttttcattttt |
4484466 |
T |
|
| Q |
210 |
nnnnataggtttcataaaccgaaagaaatcatattttagatgttcatacactaaatgtagttacatctctcaaccaaattcatattttggatcatcatat |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
4484467 |
ttttataggtttcataaaccgaaagaaatcatattttagatgttcatacactaaatgtagttacatctctcaaccaaattcatattttggatcgtcatat |
4484566 |
T |
|
| Q |
310 |
gttgtagaagtctaatctcttttgctagatccaactgcacttttagtt |
357 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
4484567 |
attgtagaagtctaatctcttttgctagatccaactgtacttttagtt |
4484614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University