View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4617_low_10 (Length: 352)
Name: NF4617_low_10
Description: NF4617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4617_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 326; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 342
Target Start/End: Original strand, 14393174 - 14393515
Alignment:
| Q |
1 |
atggctaatgcccctgttggaggagatggaatgtcattgccattttctgaatgatttttgctaagcttgaaaccatcggcaaaacatgttcccccagatt |
100 |
Q |
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| T |
14393174 |
atggctaatgcccctgttgaaggagatggaatgtcattgccattttctgaatgatttttgctaagcttgaaaccatcggcaaaacatgttcccccagatt |
14393273 |
T |
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| Q |
101 |
ttggaagtgaagctgaaggtatatttcgacaattcactgtaattacaattctgtatgtttaactattttcttagtcttgatgttgatgttcttcatttac |
200 |
Q |
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| T |
14393274 |
ttggaagtgaagctgaaggtatatttcgacaattcattgtaattacaattctgtatgtttaactattttcttagtcttgatgttgatgttcttcatttac |
14393373 |
T |
|
| Q |
201 |
gatatcaattgtgtattaacatatatcaaggaacaaaagcatgtggatcattgaagagataatagtgttggacttaagtcccacatcgctcaaaataaag |
300 |
Q |
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| T |
14393374 |
gatatcaattgtgtattaacatatatcaaggaacaaaagtatgtggatcattgaagagataatagtgttggacttaagtcccacatcggtcaaaataaag |
14393473 |
T |
|
| Q |
301 |
atatgaagccaaaccctctaatataaaaatcaaactcctatg |
342 |
Q |
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| T |
14393474 |
atatgaagccaaaccctctaatataaaaatcaaactcctatg |
14393515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 242 - 339
Target Start/End: Original strand, 14396293 - 14396391
Alignment:
| Q |
242 |
tgtggatcattgaagagataatagtgttggacttaagtcccacatcgctcaaaataaagatatgaagc-caaaccctctaatataaaaatcaaactcct |
339 |
Q |
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| T |
14396293 |
tgtggatcattgaagagataatagtgttagacttatgccccacatcgctcaaaataaagacatgaagctaaaaccctctaatataaaaatcaaactcct |
14396391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 138 - 181
Target Start/End: Complemental strand, 14358345 - 14358302
Alignment:
| Q |
138 |
tgtaattacaattctgtatgtttaactattttcttagtcttgat |
181 |
Q |
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| T |
14358345 |
tgtaattacaattctgtatgtttaaatatttctttagtcttgat |
14358302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 272 - 339
Target Start/End: Original strand, 14390339 - 14390406
Alignment:
| Q |
272 |
acttaagtcccacatcgctcaaaataaagatatgaagccaaaccctctaatataaaaatcaaactcct |
339 |
Q |
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|||||| |||||||||||| ||| | |||| ||| |||||| ||||||||||||||||| ||||||| |
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| T |
14390339 |
acttaaatcccacatcgctgaaagtcaagacgtgaggccaaaacctctaatataaaaatcgaactcct |
14390406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 50
Target Start/End: Original strand, 14391387 - 14391429
Alignment:
| Q |
8 |
atgcccctgttggaggagatggaatgtcattgccattttctga |
50 |
Q |
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|||||| ||||| || ||||||||||||||||||||||||||| |
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| T |
14391387 |
atgcccatgttgaagaagatggaatgtcattgccattttctga |
14391429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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