View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4617_low_11 (Length: 346)
Name: NF4617_low_11
Description: NF4617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4617_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 18 - 335
Target Start/End: Original strand, 44573940 - 44574254
Alignment:
| Q |
18 |
acattctcaacaaatgttctacacagagattataggagtggttccgaaagagacctgatctgggagaaagctatcaatgaatcatttgaatacttttggt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44573940 |
acattctcaacaaatgttctacacagagattataggagtggttccgaaagagacatgatctgggagaaagctatcaatgaatcatttgaatacttttggt |
44574039 |
T |
|
| Q |
118 |
gcactttgttacaatcatgtgccttttcagnnnnnnncaaagttgtaggatatattcctttctaatgctctttatgggcttggaacacttaagtttaacg |
217 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||| | |
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| T |
44574040 |
gcactttgttacaatcatgtgccttttcagagaaaaacaaagttgtaggatatattcctttctaatgctctttat-ggcctggtgcacttaagtttaatg |
44574138 |
T |
|
| Q |
218 |
tacgtggaatttaaagaaatcataaacatcctcaattacagtgtgcatatatatatggatgacttaataataactggcagcgtaaaaaatgagattgaat |
317 |
Q |
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|||||||||||||||||||||||||||||||| ||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44574139 |
tacgtggaatttaaagaaatcataaacatccttaattatagtgtgc--atatgtatggatgacttaataataactggcagcgtaaaaaatgagattgaat |
44574236 |
T |
|
| Q |
318 |
attttaagagattgatga |
335 |
Q |
| |
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|||||||||||||||||| |
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| T |
44574237 |
attttaagagattgatga |
44574254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 234 - 335
Target Start/End: Original strand, 22489974 - 22490073
Alignment:
| Q |
234 |
aaatcataaacatcctcaattacagtgtgcatatatatatggatgacttaataataactggcagcgtaaaaaatgagattgaatattttaagagattgat |
333 |
Q |
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| T |
22489974 |
aaatcataaacatcctcaattatagtgtgcatat--atatggatgacttaatgatatctgacagcgtaaaaaatgagattgaatattttaagagattgat |
22490071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 234 - 335
Target Start/End: Complemental strand, 25383431 - 25383332
Alignment:
| Q |
234 |
aaatcataaacatcctcaattacagtgtgcatatatatatggatgacttaataataactggcagcgtaaaaaatgagattgaatattttaagagattgat |
333 |
Q |
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|||||||||||||||||||||| ||||||||||||||| |||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
25383431 |
aaatcataaacatcctcaattatagtgtgcatatatat--ggatgacttaatgatatctgacagcgtaaaaaatgagattgaatattttaagagattgat |
25383334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 234 - 271
Target Start/End: Original strand, 10123149 - 10123186
Alignment:
| Q |
234 |
aaatcataaacatcctcaattacagtgtgcatatatat |
271 |
Q |
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|
|||||||||||||||||||||| ||||||||||||||| |
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| T |
10123149 |
aaatcataaacatcctcaattatagtgtgcatatatat |
10123186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 267
Target Start/End: Original strand, 10123024 - 10123057
Alignment:
| Q |
234 |
aaatcataaacatcctcaattacagtgtgcatat |
267 |
Q |
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|||||||||||||||||||||| ||||||||||| |
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|
| T |
10123024 |
aaatcataaacatcctcaattatagtgtgcatat |
10123057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 271
Target Start/End: Original strand, 19306583 - 19306620
Alignment:
| Q |
234 |
aaatcataaacatcctcaattacagtgtgcatatatat |
271 |
Q |
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|||||||||||||||| ||||| ||||||||||||||| |
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| T |
19306583 |
aaatcataaacatccttaattatagtgtgcatatatat |
19306620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 271
Target Start/End: Original strand, 28244905 - 28244942
Alignment:
| Q |
234 |
aaatcataaacatcctcaattacagtgtgcatatatat |
271 |
Q |
| |
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|||| ||||||||||||||||| ||||||||||||||| |
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| T |
28244905 |
aaatgataaacatcctcaattatagtgtgcatatatat |
28244942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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