View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4617_low_12 (Length: 331)
Name: NF4617_low_12
Description: NF4617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4617_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 30 - 313
Target Start/End: Original strand, 44144459 - 44144742
Alignment:
| Q |
30 |
atttgcttagagcactacagttgtcaatgaaacatggataaatttaaaattagggaaggtctcgagatttttgtcaagctgaatatgaaattcaataaag |
129 |
Q |
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| T |
44144459 |
atttgcttagagcactacagttggcaataaaacatggataaaattaaaattagggaaggtgtcgagatttttgccaagctgaatatgaaattcaataaag |
44144558 |
T |
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| Q |
130 |
tgaccatgaaataaagtaaggtgttccctcatctacccccatcatcatagagaagaagctttgcaagaaattttacttggcctgtaatttaacaagaagt |
229 |
Q |
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| T |
44144559 |
tgaccatgaaataaagtaaggtgttccctcatctacccccatcatcatagagaagaagctttgcaagaaattttacttggcctgtaatttaacaagaagt |
44144658 |
T |
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| Q |
230 |
ttctctccttacatggattaaaccagataaagttttgtacatactggaatttgacatcatagccttacaaaacgaggcgttatt |
313 |
Q |
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| T |
44144659 |
ttctctccttagatggattaaaccagataaagttttgtacatactggaattcgacatcatagccttaggaaacaaggcgttatt |
44144742 |
T |
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