View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4617_low_16 (Length: 291)
Name: NF4617_low_16
Description: NF4617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4617_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 20 - 278
Target Start/End: Original strand, 7368077 - 7368335
Alignment:
| Q |
20 |
cacacatagaagtttcttcctattttctttgtttctaatgtattagagtatataatcactctcaataagttagttataggctgttcgttaagaataacaa |
119 |
Q |
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| T |
7368077 |
cacacatagaagtttcttcctattttctttgtttctaatgtattagagtatataatcactctcaataagttagttataggttgctcgttaagaataacaa |
7368176 |
T |
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| Q |
120 |
accaactaaactaacaattttaatgcgatccttccaagtttcaaacatattccttatcatataagttcgatatctcattgatgatgtgtattttttaata |
219 |
Q |
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| T |
7368177 |
accaactaaactaacaattttaatgcgatccttccaagtttcaaacatattccttgtcatataagttcgatatctcattgatgatgtgtattttttaata |
7368276 |
T |
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| Q |
220 |
gagaaagtgtaactcttactaagtaatgaagctaagtttcataccaaaatgtacatttc |
278 |
Q |
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| T |
7368277 |
gagaaagtgtaactcttactaagtaatgaagctaagtttcataccaaaatgcacatttc |
7368335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 31 - 140
Target Start/End: Original strand, 7377088 - 7377196
Alignment:
| Q |
31 |
gtttcttcctattttctttgtttctaatgtattagagtatataatcactctcaataagttagttataggctgttcgttaagaataacaaaccaactaaac |
130 |
Q |
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| T |
7377088 |
gtttcttcctattttctctgtttttaat-tattagagtataggatcagtctcaataaattaattacagttagtttgttaagaataacaaactaactaaac |
7377186 |
T |
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| Q |
131 |
taacaatttt |
140 |
Q |
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| T |
7377187 |
tagcaatttt |
7377196 |
T |
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