View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4617_low_25 (Length: 224)
Name: NF4617_low_25
Description: NF4617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4617_low_25 |
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Alignment Details
Target: chr8 (Bit Score: 132; Significance: 1e-68; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 76 - 207
Target Start/End: Complemental strand, 38300869 - 38300738
Alignment:
| Q |
76 |
cttacatcaaataggccgtcagataaagagtttaacttctcttgaaatggcatgctagaagattggtcctggataattctttgcacgcaagaaggagtac |
175 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38300869 |
cttacatcaaataggccgtcagataaagagtttaacttctcttgaaatggcatgctagaagattggtcctggataattctttgcacgcaagaaggagtac |
38300770 |
T |
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| Q |
176 |
ttttgctagaatacttgtcaaatagcatgtac |
207 |
Q |
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| T |
38300769 |
ttttgctagaatacttgtcaaatagcatgtac |
38300738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 76 - 207
Target Start/End: Complemental strand, 38321614 - 38321483
Alignment:
| Q |
76 |
cttacatcaaataggccgtcagataaagagtttaacttctcttgaaatggcatgctagaagattggtcctggataattctttgcacgcaagaaggagtac |
175 |
Q |
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| T |
38321614 |
cttacatcaaataggccgtgagatgaagacttcaatttcttttgcaatggcatgctagaagattcgtcctgaatagttctttgcaccccagaagaaatac |
38321515 |
T |
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| Q |
176 |
ttttgctagaatacttgtcaaatagcatgtac |
207 |
Q |
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| T |
38321514 |
ttttgctagaatacttgtcaaatagcatgtac |
38321483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 76 - 207
Target Start/End: Complemental strand, 38309516 - 38309385
Alignment:
| Q |
76 |
cttacatcaaataggccgtcagataaagagtttaacttctcttgaaatggcatgctagaagattggtcctggataattctttgcacgcaagaaggagtac |
175 |
Q |
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| T |
38309516 |
cttacatcaaataggccctgagataaagactttaacttcttttgcaatggcacactagaagattggtcctgaattgttctttgcacgccagaagaagtac |
38309417 |
T |
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| Q |
176 |
ttttgctagaatacttgtcaaatagcatgtac |
207 |
Q |
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| T |
38309416 |
ttttgcaagaattcttgtgaaatagcatgtac |
38309385 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 76 - 207
Target Start/End: Complemental strand, 38317519 - 38317388
Alignment:
| Q |
76 |
cttacatcaaataggccgtcagataaagagtttaacttctcttgaaatggcatgctagaagattggtcctggataattctttgcacgcaagaaggagtac |
175 |
Q |
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||||||| |||||||||| ||||||||| ||||| |||| ||| ||||||||| |||||||||||||||| || |||||| | || ||||| ||| | |
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| T |
38317519 |
cttacattgaataggccgtgagataaagactttaatttcttttgcaatggcatggtagaagattggtcctgagtagttctttttaggccagaagaagtgc |
38317420 |
T |
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| Q |
176 |
ttttgctagaatacttgtcaaatagcatgtac |
207 |
Q |
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| T |
38317419 |
ttttgctagaatacttgtcaaatagcatgtac |
38317388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 76 - 207
Target Start/End: Complemental strand, 38306766 - 38306635
Alignment:
| Q |
76 |
cttacatcaaataggccgtcagataaagagtttaacttctcttgaaatggcatgctagaagattggtcctggataattctttgcacgcaagaaggagtac |
175 |
Q |
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||||||||||||||||| | ||||||||| | | |||| ||| ||||||||| ||||||||||| |||| | | || |||||| | ||||| ||||| |
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| T |
38306766 |
cttacatcaaataggccatgagataaagactcagagttcttttgcaatggcatggtagaagattggccctgaacagttgtttgcataccagaagaagtac |
38306667 |
T |
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| Q |
176 |
ttttgctagaatacttgtcaaatagcatgtac |
207 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
38306666 |
ttttgctagaatacttgtcaaatagcatgtac |
38306635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 112 - 207
Target Start/End: Complemental strand, 38314072 - 38313977
Alignment:
| Q |
112 |
ttctcttgaaatggcatgctagaagattggtcctggataattctttgcacgcaagaaggagtacttttgctagaatacttgtcaaatagcatgtac |
207 |
Q |
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|||| ||| ||||||||| ||||||||||| ||| ||| || ||||||| | ||||| ||||||||||||||| |||||| |||||||||||||| |
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| T |
38314072 |
ttcttttgcaatggcatggtagaagattggccctaaatagttgtttgcaccctagaagaagtacttttgctagagtacttggcaaatagcatgtac |
38313977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 91 - 207
Target Start/End: Complemental strand, 38326349 - 38326233
Alignment:
| Q |
91 |
ccgtcagataaagagtttaacttctcttgaaatggcatgctagaagattggtcctggataattctttgcacgcaagaaggagtacttttgctagaatact |
190 |
Q |
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|||| ||||||||| || | |||| ||| |||| |||| | ||||||||| |||| | | ||||||||| || ||||| ||||| || ||||||||||| |
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| T |
38326349 |
ccgtgagataaagacttggagttcttttgcaatgacatggtcgaagattggccctgaacagttctttgcatgccagaagaagtacgttggctagaatact |
38326250 |
T |
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| Q |
191 |
tgtcaaatagcatgtac |
207 |
Q |
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| T |
38326249 |
tgccaaatagcatgtac |
38326233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 76 - 146
Target Start/End: Original strand, 38849817 - 38849887
Alignment:
| Q |
76 |
cttacatcaaataggccgtcagataaagagtttaacttctcttgaaatggcatgctagaagattggtcctg |
146 |
Q |
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| T |
38849817 |
cttacatcaaataggccatgagataaagactttaatttcttttgtaatggcatgctagaagattggtcctg |
38849887 |
T |
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