View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4617_low_27 (Length: 217)
Name: NF4617_low_27
Description: NF4617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4617_low_27 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 109; Significance: 5e-55; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 52 - 217
Target Start/End: Complemental strand, 12171620 - 12171453
Alignment:
| Q |
52 |
gtgacacgttcacagtagaaagaatatattctaatataggtgaaggaaagatatgtaacaataatgtttatgtaaacgcagtcaattggatgttgaacgt |
151 |
Q |
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| T |
12171620 |
gtgacacattcacagtagaaagaatatattctaatataggtgaaggaaagatacgtaacaaaaatgtctatgtaaacgcagtcaattggacgttgaacgt |
12171521 |
T |
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| Q |
152 |
gtg--gtcattgcgaagcaacgactagaagcttcatattaacatatggtggaacagttgcaaacttga |
217 |
Q |
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| T |
12171520 |
gtggcgagattgtgaagcaatgactaggagcttcatattaacatatggtgaaacggttgcaaacttga |
12171453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 52 - 217
Target Start/End: Complemental strand, 12416048 - 12415881
Alignment:
| Q |
52 |
gtgacacgttcacagtagaaagaatatattctaatataggtgaaggaaagatatgtaacaataatgtttatgtaaacgcagtcaattggatgttgaacgt |
151 |
Q |
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| T |
12416048 |
gtgacacattcacagtagaaagaatatattctaatataggtgaaggaaagatacgtaacaaaaatgtctatgtaaacgcagtcaattggacgttgaacgt |
12415949 |
T |
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| Q |
152 |
gtg--gtcattgcgaagcaacgactagaagcttcatattaacatatggtggaacagttgcaaacttga |
217 |
Q |
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| T |
12415948 |
gtggcgagattgtgaagcaatgactaggagcttcatattaacatatggtgaaacggttgcaaacttga |
12415881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 65 - 110
Target Start/End: Original strand, 1968360 - 1968405
Alignment:
| Q |
65 |
agtagaaagaatatattctaatataggtgaaggaaagatatgtaac |
110 |
Q |
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| T |
1968360 |
agtagaaagaatatattctgatataggtgggggaaagatatataac |
1968405 |
T |
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