View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4617_low_29 (Length: 207)
Name: NF4617_low_29
Description: NF4617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4617_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 178; Significance: 3e-96; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 17 - 194
Target Start/End: Complemental strand, 3111922 - 3111745
Alignment:
| Q |
17 |
acaaacccgagtgtgccatcaacaggatctagtacccaaaatcttccagatggaccaccggttgagttgcagcgacttataatatcgagaacttctgaat |
116 |
Q |
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| T |
3111922 |
acaaacccgagtgtgccatcaacaggatctagtacccaaaatcttccagatggaccaccggttgagttgcagcgacttataatatcgagaacttctgaat |
3111823 |
T |
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| Q |
117 |
ttccaagtggtgattttggcttctgaacaccaaatcgaggcgcttcagctaggcaatcattcacagttttaaccacag |
194 |
Q |
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| T |
3111822 |
ttccaagtggtgattttggcttctgaacaccaaatcgaggcgcttcagctaggcaatcattcacagttttaaccacag |
3111745 |
T |
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Target: chr7 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 136 - 192
Target Start/End: Original strand, 19058473 - 19058529
Alignment:
| Q |
136 |
cttctgaacaccaaatcgaggcgcttcagctaggcaatcattcacagttttaaccac |
192 |
Q |
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| T |
19058473 |
cttctgaacaccaaatcaaggcgcttcagttaggcaatcattcacaattttaaccac |
19058529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 3e-16; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 136 - 191
Target Start/End: Complemental strand, 50803436 - 50803381
Alignment:
| Q |
136 |
cttctgaacaccaaatcgaggcgcttcagctaggcaatcattcacagttttaacca |
191 |
Q |
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|||| |||||||||||||||||||||||| |||||||||||||||| ||||||||| |
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| T |
50803436 |
cttccgaacaccaaatcgaggcgcttcagttaggcaatcattcacaattttaacca |
50803381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 136 - 191
Target Start/End: Original strand, 50872441 - 50872496
Alignment:
| Q |
136 |
cttctgaacaccaaatcgaggcgcttcagctaggcaatcattcacagttttaacca |
191 |
Q |
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|||| |||||||||||||||||||||||| |||||||||||||||| ||||||||| |
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| T |
50872441 |
cttccgaacaccaaatcgaggcgcttcagttaggcaatcattcacaattttaacca |
50872496 |
T |
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