View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4617_low_6 (Length: 434)
Name: NF4617_low_6
Description: NF4617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4617_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 19 - 423
Target Start/End: Original strand, 42275122 - 42275522
Alignment:
| Q |
19 |
acagcattgtgtatttttccagaattgtagaaaaaatattggtacgatgtatgnnnnnnnattgttttttcactatactcccctgctttggttccatact |
118 |
Q |
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| T |
42275122 |
acagcattgtgtatttttccagaattgtagaaaaaatattggtacgatgtatgctcccccattgttttttcactatactcccctgctttggttccatact |
42275221 |
T |
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| Q |
119 |
caaccatagttactgtttccttgtcttccgttatccatgacactctcatcttatctttccccaccaatgaaatatgcacctacaagcaaaaatatgtcac |
218 |
Q |
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| T |
42275222 |
caaccatagtttctgtttccttgtcttccgttatccatgacactctcatcttatctttccccaccaatgaaatatgcacctacaagcaaaaaaatgtcac |
42275321 |
T |
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| Q |
219 |
aaacaacgtcactaatcttaaaatgaccaatttaatgtatgattatagtcaaatttgttttgaaatttttcactaaatgagtttgtgactggttggttta |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |
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| T |
42275322 |
aaacaacgtcactaatcttaaaatgaccaatttaatgtatgattatagtcaaatttgttttgaattttttcactaaatgagtttgtgac----tggttta |
42275417 |
T |
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| Q |
319 |
tttagtgtgacaaaatatatgaatttatcaatgagttaaggtaactaaaatttataatgaacctgttgaggttctgaattggagcgttgatggggagtga |
418 |
Q |
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| T |
42275418 |
tttagtgtgacaaaatatatgaatttatcaatgagttaaggtaactaaaatttataatgaacctgttgaggttctgaattggagcgttgatggggagtga |
42275517 |
T |
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| Q |
419 |
tgatg |
423 |
Q |
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| T |
42275518 |
tgatg |
42275522 |
T |
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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 199
Target Start/End: Complemental strand, 26275458 - 26275401
Alignment:
| Q |
142 |
tcttccgttatccatgacactctcatcttatctttccccaccaatgaaatatgcacct |
199 |
Q |
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| T |
26275458 |
tcttcagttatccatgatactctcatatgatctttccctaccaacgaaatgtgcacct |
26275401 |
T |
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