View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4617_low_7 (Length: 404)
Name: NF4617_low_7
Description: NF4617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4617_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 1 - 397
Target Start/End: Original strand, 41739253 - 41739649
Alignment:
| Q |
1 |
gtggctcaaggcatgcttgcaagtacgcaacttgctttgatcatatcgcagtcccattcnnnnnnnaagtgaaagttgcacggaatcaaactaaactagt |
100 |
Q |
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| T |
41739253 |
gtggctcaaggcatgcttgcaagtacgcaacttgctttgatcatatcgcagtcccattctttttttaagtgaaagttgcacggaatcaaactaaactagt |
41739352 |
T |
|
| Q |
101 |
atttgttaatggtctcaagttaagtttgaaatttgaatagattgagttcgaatcttaactaatactagtagtattatgaatacaagtgaattgtttaagt |
200 |
Q |
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|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
41739353 |
atttgttattggtctcaagttaaatttgaaatttgaatagattgagttcgaatcttaactaatactagtagtattatgaatacaagtgaatcgtttaagt |
41739452 |
T |
|
| Q |
201 |
ttgaccgcctcaatgtttaatcaaccttaaaattaagctcgattaatcaaatgttcaatcaagttcctaaacttgcattgacataaacaaggattcttga |
300 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41739453 |
ttgaccgcctcaatgttttatcaaccttaaaattaagctcgattaatcaaatgttcaatcaagttcctaaacttgcattgacataaacaaggattcttga |
41739552 |
T |
|
| Q |
301 |
atgcgacaatgaccggtacggtgcaagtcatggacaattcaacaagaattgctaccaacctttatttcttgaagaccaactcaagtctctcattgct |
397 |
Q |
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|||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41739553 |
atgcgacaatgaccggtacggtgcaagtcatgcacacttcaacaagaattgctaccaacctttatttcttgaagaccaactcaagtctctcattgct |
41739649 |
T |
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