View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4617_low_9 (Length: 359)
Name: NF4617_low_9
Description: NF4617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4617_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 268; Significance: 1e-149; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 18 - 346
Target Start/End: Complemental strand, 11464686 - 11464356
Alignment:
| Q |
18 |
aatacaatcatgcagttatagtgttgttggccttacgattgaaatcggattgtgactatttaaagatcagaagtgaaataaaatttgttctaacagatca |
117 |
Q |
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| T |
11464686 |
aatacagtcacgcagttataatgttgttggccttacgattgaaatcgaattgtgattatttaaagatcagaagtgaaataaaaattgttctatcaaatca |
11464587 |
T |
|
| Q |
118 |
tacggctgatatcattagtcactttttt--agtgcagagaatcactttcccacaacaaaatagccctagttatgagtaaatgggcaaagaaaaagggtca |
215 |
Q |
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|||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |
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| T |
11464586 |
gacggctgatatcattaatcactttttttgagtgcagagaatcactttcccacaacaaaataaccctagttatgggtaaatgggcaaagaaaaagggtca |
11464487 |
T |
|
| Q |
216 |
aatttatttgtttacatttgaacttgtcgttttgcttagttaagcaaacttgtacttaagggtccgtgcatagaacaaaaaagaagaacgaaacgcatct |
315 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11464486 |
aatttatttgtttacttttgaacttgtcgttttgcttagttaagcaaacttgtacttaagggtccgtgcatagaacaaaaaagaagaacgaaacgcatct |
11464387 |
T |
|
| Q |
316 |
tgggatagtgtcacgggtgagatgccatctc |
346 |
Q |
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| T |
11464386 |
tgggatagtgtcacgggtgagatgccatctc |
11464356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 18 - 164
Target Start/End: Complemental strand, 16495388 - 16495238
Alignment:
| Q |
18 |
aatacaatcatgcagttatagtgttgttggccttacgattgaaatcggattgtgactatttaaagatcagaagtgaaataaaatttgttctaacagatca |
117 |
Q |
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| T |
16495388 |
aatacagtcacgcagtcagagtattgtcggccttacgattgaaattggattgggaatgtttaaagatcagaagtgaaataaaaactgttctaatagatca |
16495289 |
T |
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| Q |
118 |
tacggctgatatcatt----agtcacttttttagtgcagagaatcactttc |
164 |
Q |
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| T |
16495288 |
gacggctgatatcattctagagtcactatttgactgcagagaatcattttc |
16495238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 37 - 133
Target Start/End: Original strand, 25912391 - 25912487
Alignment:
| Q |
37 |
agtgttgttggccttacgattgaaatcggattgtgactatttaaagatcagaagtgaaataaaatttgttctaacagatcatacggctgatatcatt |
133 |
Q |
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|||||| |||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||| | |||||||| || | |||| |||||||||| |
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| T |
25912391 |
agtgttattggtcttacgattgaaatcggattgtgaatatttaaagatcaaaagtgaaataaaaactattctaacaaattagacggttgatatcatt |
25912487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 29 - 133
Target Start/End: Complemental strand, 12323030 - 12322926
Alignment:
| Q |
29 |
gcagttatagtgttgttggccttacgattgaaatcggattgtgactatttaaagatcagaagtgaaataaaatttgttctaacagatcatacggctgata |
128 |
Q |
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||||||| |||||| |||| |||||||||||||||||||||| | ||||||||||||||||||||||||||| | |||||||| |||||| || ||||| |
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| T |
12323030 |
gcagttaaagtgttattggtcttacgattgaaatcggattgtaaatatttaaagatcagaagtgaaataaaaactattctaacatatcatatggttgata |
12322931 |
T |
|
| Q |
129 |
tcatt |
133 |
Q |
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||||| |
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| T |
12322930 |
tcatt |
12322926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 49 - 129
Target Start/End: Complemental strand, 5435001 - 5434921
Alignment:
| Q |
49 |
cttacgattgaaatcggattgtgactatttaaagatcagaagtgaaataaaatttgttctaacagatcatacggctgatat |
129 |
Q |
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|||||||||||||||||||||||| ||||||||||| |||||||||||||| | |||||| |||||| |||| |||||| |
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| T |
5435001 |
cttacgattgaaatcggattgtgaatatttaaagataggaagtgaaataaaaactattctaatagatcagacggttgatat |
5434921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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