View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4618-Insertion-2 (Length: 982)

Name: NF4618-Insertion-2
Description: NF4618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4618-Insertion-2
NF4618-Insertion-2
[»] chr7 (20 HSPs)
chr7 (8-954)||(38971255-38972209)
chr7 (251-471)||(35090378-35090592)
chr7 (801-979)||(23859050-23859226)
chr7 (850-982)||(7398425-7398555)
chr7 (851-982)||(9021799-9021927)
chr7 (801-979)||(27237373-27237548)
chr7 (899-982)||(17800266-17800349)
chr7 (767-977)||(12419410-12419618)
chr7 (776-899)||(23744850-23744974)
chr7 (851-965)||(6765680-6765792)
chr7 (806-939)||(21763543-21763672)
chr7 (865-979)||(9014782-9014887)
chr7 (850-942)||(18776764-18776854)
chr7 (802-841)||(23020434-23020473)
chr7 (850-961)||(2611260-2611369)
chr7 (873-942)||(8239701-8239767)
chr7 (801-836)||(26917680-26917715)
chr7 (850-900)||(28749762-28749813)
chr7 (914-972)||(36891562-36891620)
chr7 (852-934)||(36902924-36903004)
[»] chr8 (24 HSPs)
chr8 (802-979)||(7944473-7944648)
chr8 (800-967)||(5973056-5973221)
chr8 (850-982)||(11290158-11290288)
chr8 (800-964)||(15078750-15078912)
chr8 (800-979)||(34789811-34789988)
chr8 (800-978)||(15167362-15167540)
chr8 (803-942)||(8646220-8646356)
chr8 (800-979)||(34048657-34048833)
chr8 (862-965)||(25561506-25561605)
chr8 (873-982)||(5942670-5942776)
chr8 (776-838)||(4097821-4097883)
chr8 (778-935)||(30674330-30674485)
chr8 (850-965)||(41677172-41677286)
chr8 (851-965)||(39332405-39332517)
chr8 (850-955)||(30883330-30883433)
chr8 (914-972)||(5721543-5721601)
chr8 (914-979)||(14510042-14510108)
chr8 (865-962)||(8102906-8103001)
chr8 (865-978)||(23941105-23941216)
chr8 (873-955)||(42600783-42600862)
chr8 (850-955)||(45475818-45475921)
chr8 (802-841)||(5942780-5942819)
chr8 (851-955)||(23798261-23798363)
chr8 (776-841)||(14509905-14509970)
[»] chr1 (13 HSPs)
chr1 (770-979)||(45758482-45758691)
chr1 (801-977)||(5533302-5533476)
chr1 (851-979)||(38547035-38547161)
chr1 (804-981)||(43235720-43235897)
chr1 (776-965)||(6221680-6221865)
chr1 (800-979)||(39134668-39134848)
chr1 (862-972)||(38853518-38853625)
chr1 (850-965)||(10925951-10926065)
chr1 (873-957)||(6771801-6771882)
chr1 (850-955)||(5316692-5316795)
chr1 (850-955)||(23185439-23185542)
chr1 (852-955)||(1366878-1366979)
chr1 (857-955)||(27559649-27559745)
[»] scaffold1590 (1 HSPs)
scaffold1590 (800-977)||(207-382)
[»] chr2 (25 HSPs)
chr2 (777-979)||(21665627-21665826)
chr2 (800-977)||(16096986-16097161)
chr2 (801-979)||(13800494-13800671)
chr2 (800-965)||(38400788-38400951)
chr2 (804-979)||(24035498-24035671)
chr2 (850-980)||(12134039-12134167)
chr2 (804-972)||(28425660-28425829)
chr2 (899-979)||(37182646-37182726)
chr2 (851-972)||(16227368-16227487)
chr2 (797-841)||(44914850-44914894)
chr2 (851-977)||(11912757-11912881)
chr2 (776-837)||(37182760-37182821)
chr2 (873-937)||(10252431-10252495)
chr2 (800-838)||(12694794-12694832)
chr2 (878-970)||(22727530-22727619)
chr2 (850-955)||(6965007-6965110)
chr2 (899-979)||(11952652-11952732)
chr2 (850-955)||(12337447-12337550)
chr2 (850-955)||(29939861-29939964)
chr2 (769-841)||(42029261-42029333)
chr2 (851-955)||(10762565-10762667)
chr2 (802-837)||(11952540-11952575)
chr2 (850-955)||(9046029-9046133)
chr2 (800-837)||(11912705-11912742)
chr2 (857-955)||(24410437-24410533)
[»] chr4 (26 HSPs)
chr4 (800-972)||(52468275-52468444)
chr4 (776-965)||(10041923-10042111)
chr4 (802-979)||(39329342-39329517)
chr4 (802-971)||(27112020-27112186)
chr4 (857-965)||(36118463-36118569)
chr4 (857-979)||(36178655-36178774)
chr4 (797-961)||(24396934-24397097)
chr4 (850-979)||(51691913-51692042)
chr4 (873-965)||(4167913-4168002)
chr4 (873-965)||(36362893-36362981)
chr4 (800-841)||(5893130-5893171)
chr4 (862-966)||(37744919-37745022)
chr4 (776-836)||(24614077-24614137)
chr4 (850-955)||(54780783-54780886)
chr4 (857-961)||(2135326-2135428)
chr4 (865-972)||(45656164-45656269)
chr4 (850-955)||(10978906-10979009)
chr4 (850-955)||(43455529-43455632)
chr4 (850-900)||(17679458-17679509)
chr4 (850-942)||(32128603-32128693)
chr4 (851-956)||(35779325-35779427)
chr4 (851-955)||(38209590-38209692)
chr4 (850-942)||(48209259-48209349)
chr4 (850-955)||(16845027-16845131)
chr4 (859-957)||(5128849-5128945)
chr4 (804-841)||(30507071-30507108)
[»] chr3 (12 HSPs)
chr3 (862-979)||(8420306-8420421)
chr3 (804-979)||(25855402-25855574)
chr3 (804-977)||(49393073-49393242)
chr3 (776-979)||(26279520-26279722)
chr3 (851-979)||(789916-790042)
chr3 (850-979)||(54574826-54574953)
chr3 (797-961)||(32319103-32319263)
chr3 (804-965)||(52374650-52374810)
chr3 (873-955)||(8073361-8073440)
chr3 (873-955)||(47467688-47467767)
chr3 (850-955)||(54619202-54619305)
chr3 (862-972)||(28689372-28689480)
[»] scaffold1320 (1 HSPs)
scaffold1320 (800-964)||(1346-1508)
[»] chr5 (22 HSPs)
chr5 (776-980)||(10407437-10407639)
chr5 (850-982)||(36868872-36869002)
chr5 (802-979)||(34425880-34426055)
chr5 (802-982)||(1366474-1366652)
chr5 (851-965)||(14318382-14318494)
chr5 (850-979)||(2024638-2024765)
chr5 (800-965)||(2530844-2531006)
chr5 (800-979)||(11242265-11242441)
chr5 (802-940)||(26718897-26719033)
chr5 (802-940)||(26988641-26988777)
chr5 (851-970)||(2412074-2412191)
chr5 (850-969)||(33037767-33037884)
chr5 (850-955)||(28822338-28822441)
chr5 (806-841)||(10543785-10543820)
chr5 (776-838)||(35080694-35080756)
chr5 (850-965)||(40794323-40794436)
chr5 (857-955)||(16198797-16198893)
chr5 (852-938)||(22648734-22648818)
chr5 (850-955)||(34756362-34756465)
chr5 (850-942)||(38869359-38869449)
chr5 (800-834)||(2412204-2412238)
chr5 (857-955)||(9364292-9364388)
[»] scaffold0022 (2 HSPs)
scaffold0022 (785-977)||(40064-40257)
scaffold0022 (785-977)||(138124-138317)
[»] scaffold0012 (1 HSPs)
scaffold0012 (800-961)||(206438-206597)
[»] scaffold0097 (1 HSPs)
scaffold0097 (857-965)||(38916-39022)
[»] chr6 (12 HSPs)
chr6 (802-971)||(2477536-2477702)
chr6 (858-982)||(21183682-21183804)
chr6 (873-979)||(20611770-20611873)
chr6 (873-955)||(33774121-33774200)
chr6 (857-955)||(17353958-17354054)
chr6 (857-955)||(28075787-28075883)
chr6 (850-955)||(13727398-13727501)
chr6 (850-955)||(20711719-20711822)
chr6 (850-955)||(21479498-21479601)
chr6 (850-955)||(27788687-27788790)
chr6 (857-965)||(6159432-6159538)
chr6 (872-979)||(4036928-4037032)
[»] scaffold0182 (1 HSPs)
scaffold0182 (851-982)||(23993-24121)
[»] scaffold0018 (1 HSPs)
scaffold0018 (857-963)||(173516-173620)
[»] scaffold0003 (1 HSPs)
scaffold0003 (876-970)||(351360-351451)
[»] scaffold0007 (1 HSPs)
scaffold0007 (802-972)||(230812-230978)
[»] scaffold0039 (1 HSPs)
scaffold0039 (850-955)||(106539-106642)


Alignment Details
Target: chr7 (Bit Score: 761; Significance: 0; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 761; E-Value: 0
Query Start/End: Original strand, 8 - 954
Target Start/End: Complemental strand, 38972209 - 38971255
Alignment:
Q  8 catttcacatccactaaactacgctgaatgatgcaactaatttaatacaaatattaatgatgtaacctagcaagaatgaagattatgcggtcaattttct 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  38972209 catttcacatccactaaactacgctgaatgatgcaactaatttaatacaaatattgatgatgtaacctagcaagaatgaagattatgcggtcaattttct 38972110  T
Q  108 aagctggatttcatgaagcatctgctcttagttgtaaaatatatatgttgtacttgtatacattaagaagcataatagcgacatctatt-aaattattaa 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||    
T  38972109 aagctggatttcatgaagcatctgctcttagttgtaaaatatatatgttgtacttgtatacattaagaagcataatagcgacatctattgaatttattaa 38972010  T
Q  207 taatgtatttgtcaatttcactgttccatttttgtattatattataaaccggagtctctaacacacaagcctactcatagggatttacattcatccactg 306  Q
    |||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38972009 taatgtatttgtcaatttcactgttccatttttgtagtacattataaaccggagtctctaacacacaagcctactcatagggatttacattcatccactg 38971910  T
Q  307 tttaggtcatatttaacttgttccccttcttaattattgagttagttaactagtttaagccttaagataattg-aaaaatatgattaattaaggcgaaga 405  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  38971909 tttaggtcatatttaacttgttccccttcttaattattgagttagttaactagtttaagccttaagataattgaaaaaatatgattaattaaggcgaaga 38971810  T
Q  406 acattaagaataattatggatatttagcacaatgttttatcagatttatgctggaatagaggattaaattctggagctctggtgtgatgcacatggagag 505  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  38971809 acattaagaataattatggatatttagcacaatgttttatcagatttatgctggaatagaggattaaattttggggctctggtgtgatgcacatggagag 38971710  T
Q  506 agggtacatataatgaagttaat-tatatttatacggcttatgtgaaacacggacatagataacatcatacaacatgacattaaagaaaatttcctcgtg 604  Q
    ||||||| |||||||| |||||| |  |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  38971709 agggtacgtataatgacgttaatgttaatttatacggcttatgtgaaacacggacatagat-acatcatacaacatgacattaaagaaaatttcctcgtg 38971611  T
Q  605 ttttatatgtgttatgacttttgatcacaaccagtgaaattcagattttgctaaattctttttctctctcatttctaacataagatgaagattttaatag 704  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38971610 ttttatatgtgttatgacttttgatcacaaccagtgaaattcatattttgctaaattctttttctctctcatttctaacataagatgaagattttaatag 38971511  T
Q  705 accatcatatcac---------atgagataattcatacccttcaaatatcttcaagttttgtggatccaatcatcatggacgttcctaagaatctagaga 795  Q
    |||||||||||||         ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||||    
T  38971510 accatcatatcacatgagaatgatgagataattcacacccttcaaatatcttcaagttttgtggatccaatcatcatggccgtttctacgaatctagaga 38971411  T
Q  796 ttcagctctgtaagtgaaaagagatccgtaataaaataaaaatgtannnnnnnnaaaagaccaatattctatttaaatttttaaaagataaatacaatgt 895  Q
     || ||| |||||||||||||||| |||||||||||||||||||||        |||||| ||||||| |||||||||||||||||||||||||||| ||    
T  38971410 ctcggctttgtaagtgaaaagagacccgtaataaaataaaaatgtattttttttaaaagatcaatattttatttaaatttttaaaagataaatacaaggt 38971311  T
Q  896 gccgtcgtatatatgttatacacccaaatgtgaaaatcactaccgtaaacacgatgaac 954  Q
       ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||    
T  38971310 ---gtcgtatatatgttatacacctaaatgtgaaaatcactaccgtaaacacgaggaac 38971255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 109; E-Value: 3e-54
Query Start/End: Original strand, 251 - 471
Target Start/End: Complemental strand, 35090592 - 35090378
Alignment:
Q  251 taaaccggagtctctaacacacaagcctactcataggg-atttacattcatccactgtttaggtcatatttaacttgttccccttcttaattattgagtt 349  Q
    |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| ||||| |||||||||||||||||| |||| ||    
T  35090592 taaaccagagtctctaacacacaagcctactcataggggatttacattcatccactgtttaagtcatctttaatttgttccccttcttaattgttgaatt 35090493  T
Q  350 agttaactagtttaagccttaagataatt-gaaaaatatgattaattaaggcgaagaacattaagaataattatggatatttagcacaatgttttatcag 448  Q
    |||||| ||        |||||| |||||  ||||||| |||||||||||| ||||||||||||||||||||||| | |||| |||||||| ||||||||    
T  35090492 agttaagta-------acttaagctaattcaaaaaataagattaattaaggtgaagaacattaagaataattatgaaaatttggcacaatg-tttatcag 35090401  T
Q  449 atttatgctggaatagaggatta 471  Q
    ||||||| |||||||||||||||    
T  35090400 atttatgttggaatagaggatta 35090378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 801 - 979
Target Start/End: Complemental strand, 23859226 - 23859050
Alignment:
Q  801 ctctgtaagtgaaaagagatccgtaataaaataaaaatgtannnnnnnnaaaagaccaatattctatttaaattttt-aaaagataaatacaatgtgccg 899  Q
    ||||||||||||||||||| | ||||||||||||||| |||        || |||  ||| |||||||||||||||| |||||||||||||||||| |||    
T  23859226 ctctgtaagtgaaaagagacctgtaataaaataaaaacgtattttgtttaagagaataatgttctatttaaattttttaaaagataaatacaatgtaccg 23859127  T
Q  900 tcgtatatatgttatacacccaaatgtgaaaatcactaccgtaaacacgatgaacctcaaaccaccatcccaataaaaca 979  Q
    |   |||||||  |||||||||||  ||||||| ||||||||| ||| || || |||||||||||| |||||| ||||||    
T  23859126 t---atatatgcgatacacccaaagatgaaaattactaccgtatacatgaggatcctcaaaccaccctcccaaaaaaaca 23859050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 850 - 982
Target Start/End: Complemental strand, 7398555 - 7398425
Alignment:
Q  850 aaaagaccaatattctatttaaattttta-aaagataaatacaatgtgccgtcgtatatatgttatacacccaaatgtgaaaatcactaccgtaaacacg 948  Q
    |||||| |||| ||||||||||||||||  |||||||||||||| ||||| |   |||||||| ||||||| ||| ||||||||||||||| || ||| |    
T  7398555 aaaagaacaatgttctatttaaattttttgaaagataaatacaaggtgccat---atatatgtgatacacctaaaggtgaaaatcactaccatatacatg 7398459  T
Q  949 atgaacctcaaaccaccatcccaataaaacatcc 982  Q
    | ||||||||||||||| |||||| |||||||||    
T  7398458 aggaacctcaaaccaccctcccaaaaaaacatcc 7398425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 851 - 982
Target Start/End: Original strand, 9021799 - 9021927
Alignment:
Q  851 aaagaccaatattctatttaaatttt-taaaagataaatacaatgtgccgtcgtatatatgttatacacccaaatgtgaaaatcactaccgtaaacacga 949  Q
    ||||| |||| | ||||||||||||| |||||||||||||||||||||   ||||||||||   |||||||||| |||||||||||||||||| ||| ||    
T  9021799 aaagaacaatttgctatttaaattttttaaaagataaatacaatgtgc---cgtatatatgcggtacacccaaaggtgaaaatcactaccgtatacatga 9021895  T
Q  950 tgaacctcaaaccaccatcccaataaaacatcc 982  Q
     | ||||||||||||| |||||| |||||||||    
T  9021896 -ggacctcaaaccaccctcccaaaaaaacatcc 9021927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 801 - 979
Target Start/End: Original strand, 27237373 - 27237548
Alignment:
Q  801 ctctgtaagtgaaaagagatccgtaataaaataaaaatgtannnnnnnnaaaagaccaatattctatttaaattttt-aaaagataaatacaatgtgccg 899  Q
    |||| ||||||||||||||||||||||||||||| || |||        |||||| |||| |||||||||||||||| ||||||||||||||| |||       
T  27237373 ctctataagtgaaaagagatccgtaataaaataacaa-gtattttttttaaaagaacaatgttctatttaaattttttaaaagataaatacaaggtg--- 27237468  T
Q  900 tcgtatatatgttatacacccaaatgtgaaaatcactaccgtaaacacgatgaacctcaaaccaccatcccaataaaaca 979  Q
    | |||||||||| ||  | | ||| ||||||||||||| |||| ||| || ||||||||||||||| |||||| ||||||    
T  27237469 ttgtatatatgtgatgaatctaaaggtgaaaatcactatcgtatacatgaggaacctcaaaccaccctcccaaaaaaaca 27237548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 899 - 982
Target Start/End: Original strand, 17800266 - 17800349
Alignment:
Q  899 gtcgtatatatgttatacacccaaatgtgaaaatcactaccgtaaacacgatgaacctcaaaccaccatcccaataaaacatcc 982  Q
    |||||||||||||| |||||||||| ||||||||||||||||||  || || |||  ||||||||||||||||| |||||||||    
T  17800266 gtcgtatatatgttgtacacccaaaagtgaaaatcactaccgtatgcatgaggaatttcaaaccaccatcccaagaaaacatcc 17800349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 767 - 977
Target Start/End: Original strand, 12419410 - 12419618
Alignment:
Q  767 catcatggacgttcctaagaatctagagattcagctctgtaagtgaaaagagatccgtaataaaataaaaatgtannnnnnnnaaaagaccaatattcta 866  Q
    ||||| || |||||||| |||||  |||  || ||| |||||||||||||||  |||||||||||||| || |||        |||||| |||| |||||    
T  12419410 catcagggccgttcctatgaatccggaggctcggctttgtaagtgaaaagaggcccgtaataaaataacaacgtattttttttaaaagaacaatgttcta 12419509  T
Q  867 tttaaatttt-taaaagataaatacaatgtgccgtcgtatatatgttatacacccaaatgtgaaaatcactaccgtaaacacgatgaacctcaaaccacc 965  Q
    |||||||||| ||||||||||||||||||| |   | ||||| ||| ||||| |||||  ||||||||||||  | | ||| || |||||||||||||||    
T  12419510 tttaaattttttaaaagataaatacaatgtac---cttatatgtgtgatacatccaaagatgaaaatcactattgaatacatgaggaacctcaaaccacc 12419606  T
Q  966 atcccaataaaa 977  Q
     |||||| ||||    
T  12419607 ctcccaaaaaaa 12419618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 776 - 899
Target Start/End: Complemental strand, 23744974 - 23744850
Alignment:
Q  776 cgttcctaagaatctagagattcagctctgtaagtgaaaagagatccgtaataaaataaaaatgtannnnnnnnaaaagaccaatattctatttaaa-tt 874  Q
    |||||||| |||| | |||  |||||||| |||||||||||||  |||||| ||||||||||||||        |||||| |||| ||||| ||||| ||    
T  23744974 cgttcctacgaatttggaggctcagctctataagtgaaaagaggcccgtaaaaaaataaaaatgtatttttttaaaaagaacaatgttctaattaaattt 23744875  T
Q  875 tttaaaagataaatacaatgtgccg 899  Q
    |||||||||||||||||| ||||||    
T  23744874 tttaaaagataaatacaaggtgccg 23744850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 851 - 965
Target Start/End: Original strand, 6765680 - 6765792
Alignment:
Q  851 aaagaccaatattctatttaaattttt-aaaagataaatacaatgtgccgtcgtatatatgttatacacccaaatgtgaaaatcactaccgtaaacacga 949  Q
    ||||| |||| |||||||||||||||| ||||||||||||||| |||   ||||||||| |   |||| ||||| |||||||||||||||||| | | ||    
T  6765680 aaagaacaatgttctatttaaattttttaaaagataaatacaaggtg---tcgtatataagccgtacatccaaaggtgaaaatcactaccgtatataaga 6765776  T
Q  950 tgaacctcaaaccacc 965  Q
      ||||||||||||||    
T  6765777 gtaacctcaaaccacc 6765792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 806 - 939
Target Start/End: Original strand, 21763543 - 21763672
Alignment:
Q  806 taagtgaaaagagatccgtaataaaataaaaatgtannnnnnnnaaaagaccaatattctatttaaattttt-aaaagataaatacaatgtgccgtcgta 904  Q
    ||||| |||||||||||||||||||||||||| |||         ||||| || | |||||||||||||||| ||||||||||||||| ||    |||||    
T  21763543 taagtaaaaagagatccgtaataaaataaaaacgtattttttt--aaagaacattgttctatttaaattttttaaaagataaatacaaagta---tcgta 21763637  T
Q  905 tatatgttatacacccaaatgtgaaaatcactacc 939  Q
    ||||||  ||||||| ||| |||||||||||||||    
T  21763638 tatatgcgatacaccaaaaagtgaaaatcactacc 21763672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 865 - 979
Target Start/End: Original strand, 9014782 - 9014887
Alignment:
Q  865 tatttaaatttt-taaaagataaatacaatgtgccgtcgtatatatgttatacacccaaatgtgaaaatcactaccgtaaacacgatgaacctcaaacca 963  Q
    |||||||||||| ||||||||||||||||||||   ||||||||||       ||||||| |||||||||||||||||| ||| ||  ||||||||| ||    
T  9014782 tatttaaattttgtaaaagataaatacaatgtg---tcgtatatat-------acccaaaggtgaaaatcactaccgtatacatgagtaacctcaaatca 9014871  T
Q  964 ccatcccaataaaaca 979  Q
    || |||||| ||||||    
T  9014872 ccctcccaaaaaaaca 9014887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 850 - 942
Target Start/End: Original strand, 18776764 - 18776854
Alignment:
Q  850 aaaagaccaatattctatttaaatttt-taaaagataaatacaatgtgccgtcgtatatatgttatacacccaaatgtgaaaatcactaccgta 942  Q
    |||||| |||| ||||||||| ||||| |||||||||||||||| ||||   ||||||||||   |||||||| |||||||||| |||||||||    
T  18776764 aaaagagcaatgttctatttatattttttaaaagataaatacaaggtgc---cgtatatatgcggtacacccagatgtgaaaatgactaccgta 18776854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 802 - 841
Target Start/End: Original strand, 23020434 - 23020473
Alignment:
Q  802 tctgtaagtgaaaagagatccgtaataaaataaaaatgta 841  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  23020434 tctgtaagtgaaaagaggtccgtaataaaataaaaatgta 23020473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 850 - 961
Target Start/End: Original strand, 2611260 - 2611369
Alignment:
Q  850 aaaagaccaatattctatttaaa-tttttaaaagataaatacaatgtgccgtcgtatatatgttatacacccaaatgtgaaaatcactaccgtaaacacg 948  Q
    |||||| |||| ||||||||||| |||||||||||||||||||| ||   ||||||||||||   ||||| |||  ||||||||||| || ||| ||| |    
T  2611260 aaaagaacaatgttctatttaaattttttaaaagataaatacaaggt---gtcgtatatatgcggtacacacaatggtgaaaatcacaactgtatacatg 2611356  T
Q  949 atgaacctcaaac 961  Q
    | |||||||||||    
T  2611357 aggaacctcaaac 2611369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 873 - 942
Target Start/End: Complemental strand, 8239767 - 8239701
Alignment:
Q  873 tttttaaaagataaatacaatgtgccgtcgtatatatgttatacacccaaatgtgaaaatcactaccgta 942  Q
    ||||||||| ||||||| ||||||||||   ||||||||  ||||||||||||||||||| | |||||||    
T  8239767 tttttaaaaaataaatataatgtgccgt---atatatgtggtacacccaaatgtgaaaatgattaccgta 8239701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 801 - 836
Target Start/End: Original strand, 26917680 - 26917715
Alignment:
Q  801 ctctgtaagtgaaaagagatccgtaataaaataaaa 836  Q
    |||||||||||||||||| |||||||||||||||||    
T  26917680 ctctgtaagtgaaaagaggtccgtaataaaataaaa 26917715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 850 - 900
Target Start/End: Complemental strand, 28749813 - 28749762
Alignment:
Q  850 aaaagaccaatattctatttaaattttt-aaaagataaatacaatgtgccgt 900  Q
    |||||| |||||||||||||| |||||| ||||||||||||||| |||||||    
T  28749813 aaaagagcaatattctatttatatttttgaaaagataaatacaaggtgccgt 28749762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 914 - 972
Target Start/End: Complemental strand, 36891620 - 36891562
Alignment:
Q  914 tacacccaaatgtgaaaatcactaccgtaaacacgatgaacctcaaaccaccatcccaa 972  Q
    |||| ||||| |||||||||||||||||| ||| || ||||||||||||| | ||||||    
T  36891620 tacatccaaaggtgaaaatcactaccgtatacatgaggaacctcaaaccatcctcccaa 36891562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 852 - 934
Target Start/End: Original strand, 36902924 - 36903004
Alignment:
Q  852 aagaccaatattctatttaaa-tttttaaaagataaatacaatgtgccgtcgtatatatgttatacacccaaatgtgaaaatca 934  Q
    |||| |||| ||||||||||| ||||||| ||||||||||||   |  |||||||||||||| |||||| ||| ||||||||||    
T  36902924 aagaacaatgttctatttaaattttttaatagataaatacaa---gatgtcgtatatatgttgtacacctaaaggtgaaaatca 36903004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 81; Significance: 1e-37; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 802 - 979
Target Start/End: Original strand, 7944473 - 7944648
Alignment:
Q  802 tctgtaagtgaaaagagatccgtaataaaataaaaatgtannnnnnnnaaaagaccaatattctatttaaattttt-aaaagataaatacaatgtgccgt 900  Q
    ||||||| ||||||||| ||||||||||||||||||||||        |||||| |||| || ||||||||||||| |||| |||||||||| |||||||    
T  7944473 tctgtaattgaaaagaggtccgtaataaaataaaaatgtattttttttaaaagaacaatgttttatttaaattttttaaaaaataaatacaaggtgccgt 7944572  T
Q  901 cgtatatatgttatacacccaaatgtgaaaatcactaccgtaaacacgatgaacctcaaaccaccatcccaataaaaca 979  Q
       ||||||||| |||||||||| |||||||||||||||||| ||| || |||||||||||||||||||||| ||||||    
T  7944573 ---atatatgttgtacacccaaaggtgaaaatcactaccgtatacatgaggaacctcaaaccaccatcccaaaaaaaca 7944648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 800 - 967
Target Start/End: Original strand, 5973056 - 5973221
Alignment:
Q  800 gctctgtaagtgaaaagagatccgtaataaaataaaaatgtannnnnnnnaaaagaccaatattctatttaaattttt-aaaagataaatacaatgtgcc 898  Q
    ||||||||| ||||||||| || |||||||||||||||||||        |||||| |||| |||||||||||||||| ||||||||||||||| |||      
T  5973056 gctctgtaaatgaaaagaggtctgtaataaaataaaaatgtattcgttttaaaagaacaatgttctatttaaattttttaaaagataaatacaaggtg-- 5973153  T
Q  899 gtcgtatatatgttatacacccaaatgtgaaaatcactaccgtaaacacgatgaacctcaaaccaccat 967  Q
     ||||||||||||| |||||||| |  ||||||||| ||||||| |||||| |||||||||||||||||    
T  5973154 -tcgtatatatgttgtacacccatagatgaaaatcattaccgtatacacgaggaacctcaaaccaccat 5973221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 850 - 982
Target Start/End: Complemental strand, 11290288 - 11290158
Alignment:
Q  850 aaaagaccaatattctatttaaattttt-aaaagataaatacaatgtgccgtcgtatatatgttatacacccaaatgtgaaaatcactaccgtaaacacg 948  Q
    |||||| |||| || ||||||||||||| ||||||||||||||| |||   ||||||||||||| ||||| |||| |||||||||||||||||| ||| |    
T  11290288 aaaagaacaatgttttatttaaattttttaaaagataaatacaaggtg---tcgtatatatgttgtacactcaaaggtgaaaatcactaccgtatacatg 11290192  T
Q  949 atgaacctcaaaccaccatcccaataaaacatcc 982  Q
    |  ||||||||||||||||||||| |||||||||    
T  11290191 agcaacctcaaaccaccatcccaacaaaacatcc 11290158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 800 - 964
Target Start/End: Complemental strand, 15078912 - 15078750
Alignment:
Q  800 gctctgtaagtgaaaagagatccgtaataaaataaaaatgtannnnnnnnaaaagaccaatattctatttaaa-tttttaaaagataaatacaatgtgcc 898  Q
    ||||||||||||||||||  |||||||||||||||||| |||        ||||||  ||| ||||||||||| ||||||||||||||||| || ||||     
T  15078912 gctctgtaagtgaaaagaagtccgtaataaaataaaaacgtattttttttaaaagaataatgttctatttaaaatttttaaaagataaatataaggtgct 15078813  T
Q  899 gtcgtatatatgttatacacccaaatgtgaaaatcactaccgtaaacacgatgaacctcaaaccac 964  Q
    ||   ||||||| |||||||||||||||||||||||||| |||| ||| || ||||||||||||||    
T  15078812 gt---atatatgctatacacccaaatgtgaaaatcactatcgtatacatgaggaacctcaaaccac 15078750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 800 - 979
Target Start/End: Original strand, 34789811 - 34789988
Alignment:
Q  800 gctctgtaagtgaaaagagatccgtaataaaataaaaatgtannnnnnnnaaaagaccaatattctatttaaattt-ttaaaagataaatacaatgtgcc 898  Q
    ||||| |||||||||| || ||||||||||||||||||||||        |||||| | || |||||||||||| | |||||||||||||||||   |      
T  34789811 gctctataagtgaaaaaaggtccgtaataaaataaaaatgtattttttttaaaagaacgatgttctatttaaatctcttaaaagataaatacaa---gat 34789907  T
Q  899 gtcgtatatatgttatacacccaaatgtgaaaatcactaccgtaaacacgatgaacctcaaaccaccatcccaataaaaca 979  Q
    |||||||||||||| |||||||||| |||||||||||||||||| ||| ||  ||  |||||||||||||| || ||||||    
T  34789908 gtcgtatatatgttgtacacccaaaggtgaaaatcactaccgtatacatgagaaatatcaaaccaccatcctaaaaaaaca 34789988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 800 - 978
Target Start/End: Original strand, 15167362 - 15167540
Alignment:
Q  800 gctctgtaagtgaaaagagatccgtaataaaataaaaatgtannnnnnnn--aaaagaccaatattctatttaaattttt-aaaagataaatacaatgtg 896  Q
    |||||||||||||||| |  |||||||||||||||||| |||          |||||| |||| |||||||||||||||| |||||||||||| || |||    
T  15167362 gctctgtaagtgaaaaaaagtccgtaataaaataaaaacgtattttatttttaaaagaacaatgttctatttaaattttttaaaagataaatataaagtg 15167461  T
Q  897 ccgtcgtatatatgttatacacccaaatgtgaaaatcactaccgtaaacacgatgaacctcaaaccaccatcccaataaaac 978  Q
       | |||||||||  ||||||||||||||||||||||||| |||| ||| || ||||||||||||||| | |||| |||||    
T  15167462 ---ttgtatatatgcgatacacccaaatgtgaaaatcactatcgtatacatgaggaacctcaaaccacccttccaaaaaaac 15167540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 803 - 942
Target Start/End: Complemental strand, 8646356 - 8646220
Alignment:
Q  803 ctgtaagtgaaaagagatccgtaataaaataaaaatgtannnnnnnnaaaagaccaatattctatttaaattttt-aaaagataaatacaatgtgccgtc 901  Q
    |||||||| ||||||||||| |||||||||||||| |||        |||||| |||| |||||||||||||||| ||||||||||||||| ||    ||    
T  8646356 ctgtaagtcaaaagagatccttaataaaataaaaacgtaatttttttaaaagaacaatgttctatttaaattttttaaaagataaatacaaggta---tc 8646260  T
Q  902 gtatatatgttatacacccaaatgtgaaaatcactaccgta 942  Q
    |||||||||  |||||| |||||||||||||||||||||||    
T  8646259 gtatatatgc-atacacgcaaatgtgaaaatcactaccgta 8646220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 800 - 979
Target Start/End: Original strand, 34048657 - 34048833
Alignment:
Q  800 gctctgtaagtgaaaagagatccgtaataaaataaaaatgtannnnnnnnaaaagaccaatattctatttaaat-ttttaaaagataaatacaatgtgcc 898  Q
    |||||||||||||||| ||| ||||||||||||||||||||          ||||| |||| |||||||||||  ||||||||||||||||||||||| |    
T  34048657 gctctgtaagtgaaaatagacccgtaataaaataaaaatgtttttttt---aaagaacaatgttctatttaaacattttaaaagataaatacaatgtgtc 34048753  T
Q  899 gtcgtatatatgttatacacccaaatgtgaaaatcactaccgtaaacacgatgaacctcaaaccaccatcccaataaaaca 979  Q
    ||  ||||||| | |||||||||||  ||||||||||||| ||| ||| || || ||||| |||||| ||| || ||||||    
T  34048754 gta-tatatatatgatacacccaaagatgaaaatcactactgtatacatgaggatcctcataccaccctccaaaaaaaaca 34048833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 862 - 965
Target Start/End: Original strand, 25561506 - 25561605
Alignment:
Q  862 ttctatttaaatttttaaaagataaatacaatgtgccgtcgtatatatgttatacacccaaatgtgaaaatcactaccgtaaacacgatgaacctcaaac 961  Q
    |||||||||||| ||| |||||||||||||| |||||||   |||||||  ||| |||||||||||||||||||| ||||| ||| || |||||||||||    
T  25561506 ttctatttaaatcttttaaagataaatacaaggtgccgt---atatatgcgata-acccaaatgtgaaaatcactgccgtatacatgaggaacctcaaac 25561601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 873 - 982
Target Start/End: Complemental strand, 5942776 - 5942670
Alignment:
Q  873 tttttaaaagataaatacaatgtgccgtcgtatatatgttatacacccaaatgtgaaaatcactaccgtaaacacgatgaacctcaaaccaccatcccaa 972  Q
    ||||||||||||||||||||  ||   |||||||| ||   |||||||||| |||||||||||||||||| ||| || ||||||||||||||| ||||||    
T  5942776 tttttaaaagataaatacaagatg---tcgtatatgtgcggtacacccaaaggtgaaaatcactaccgtatacatgaggaacctcaaaccaccctcccaa 5942680  T
Q  973 taaaacatcc 982  Q
     ||| |||||    
T  5942679 aaaagcatcc 5942670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 776 - 838
Target Start/End: Complemental strand, 4097883 - 4097821
Alignment:
Q  776 cgttcctaagaatctagagattcagctctgtaagtgaaaagagatccgtaataaaataaaaat 838  Q
    ||||| || ||||| |||||||||||||||||| | |||||||||||||||||||||||||||    
T  4097883 cgttcttatgaatccagagattcagctctgtaaataaaaagagatccgtaataaaataaaaat 4097821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 778 - 935
Target Start/End: Original strand, 30674330 - 30674485
Alignment:
Q  778 ttcctaagaatctagagattcagctctgtaagtgaaaagagatccgtaataaaataaaaatgtannnnnnnnaaaagaccaatattctatttaaat-ttt 876  Q
    |||||| |||||| |||  || |||||||||||||||||||   |||||||||||||||| |||         ||||| |||| |||||||||||| |||    
T  30674330 ttcctacgaatctggaggctcggctctgtaagtgaaaagaggctcgtaataaaataaaaacgtatttttttttaaagaacaatgttctatttaaatgttt 30674429  T
Q  877 taaaagataaatacaatgtgccgtcgtatatatgttatacacccaaatgtgaaaatcac 935  Q
    ||||||||||||| || |||   |||||||||||  |||||| |||| |||||||||||    
T  30674430 taaaagataaatataaggtg---tcgtatatatgcgatacactcaaaggtgaaaatcac 30674485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 850 - 965
Target Start/End: Original strand, 41677172 - 41677286
Alignment:
Q  850 aaaagaccaatattctatttaaa--tttttaaaagataaatacaatgtgccgtcgtatatatgttatacacccaaatgtgaaaatcactaccgtaaacac 947  Q
    |||||| |||| |||||||||||  ||||||||||||||||||||   |  ||||||||||||  ||||| | ||| |||||||||||||| ||| |||     
T  41677172 aaaagaacaatgttctatttaaatttttttaaaagataaatacaa---gatgtcgtatatatgcgatacatctaaaggtgaaaatcactactgtatacat 41677268  T
Q  948 gatgaacctcaaaccacc 965  Q
    || |||||||||||||||    
T  41677269 gaggaacctcaaaccacc 41677286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 851 - 965
Target Start/End: Original strand, 39332405 - 39332517
Alignment:
Q  851 aaagaccaatattctatttaaatttttaaaa-gataaatacaatgtgccgtcgtatatatgttatacacccaaatgtgaaaatcactaccgtaaacacga 949  Q
    ||||| |||| |||||||||| ||||||||| ||||||||||| |||   || |||||| |   |||| ||||| |||||||||||||||||| ||| ||    
T  39332405 aaagaacaatgttctatttaattttttaaaaagataaatacaaggtg---tcatatataagcggtacatccaaaggtgaaaatcactaccgtatacatga 39332501  T
Q  950 tgaacctcaaaccacc 965  Q
     |||||||||||||||    
T  39332502 ggaacctcaaaccacc 39332517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 850 - 955
Target Start/End: Complemental strand, 30883433 - 30883330
Alignment:
Q  850 aaaagaccaatattctatttaaattttt-aaaagataaatacaatgtgccgtcgtatatatgttatacacccaaatgtgaaaatcactaccgtaaacacg 948  Q
    |||||| |||| ||||||||| |||||| ||||||||||||||||||||   ||||||||||   |||||||| | |||||||| ||||||||| ||| |    
T  30883433 aaaagagcaatgttctatttatattttttaaaagataaatacaatgtgc---cgtatatatgcggtacacccagaggtgaaaatgactaccgtatacatg 30883337  T
Q  949 atgaacc 955  Q
    | |||||    
T  30883336 aggaacc 30883330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 914 - 972
Target Start/End: Complemental strand, 5721601 - 5721543
Alignment:
Q  914 tacacccaaatgtgaaaatcactaccgtaaacacgatgaacctcaaaccaccatcccaa 972  Q
    |||||||||| |||||||||||||||||| ||  || ||||||||||||||| ||||||    
T  5721601 tacacccaaaagtgaaaatcactaccgtatacctgaggaacctcaaaccaccctcccaa 5721543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 914 - 979
Target Start/End: Original strand, 14510042 - 14510108
Alignment:
Q  914 tacacccaaatgtgaaaa-tcactaccgtaaacacgatgaacctcaaaccaccatcccaataaaaca 979  Q
    |||||||||||||||||| ||||||||||| ||| ||  ||||||||||||||||| ||| ||||||    
T  14510042 tacacccaaatgtgaaaaatcactaccgtatacatgagtaacctcaaaccaccatctcaaaaaaaca 14510108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 865 - 962
Target Start/End: Complemental strand, 8103001 - 8102906
Alignment:
Q  865 tatttaaattttt-aaaagataaatacaatgtgccgtcgtatatatgttatacacccaaatgtgaaaatcactaccgtaaacacgatgaacctcaaacc 962  Q
    ||||||||||||| ||||||||||||||| |||| ||   |||||||   |||||| ||| |||||||||| ||||||| ||| || ||||||||||||    
T  8103001 tatttaaattttttaaaagataaatacaaggtgcagt---atatatgcggtacacctaaaggtgaaaatcattaccgtatacatgaggaacctcaaacc 8102906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 865 - 978
Target Start/End: Original strand, 23941105 - 23941216
Alignment:
Q  865 tatttaaattttt-aaaagataaatacaatgtgccgtcgtatatatgttatacacccaaatgtgaaaatcactaccgtaaacacgatgaacctcaaacca 963  Q
    ||||||||||||| ||||||||||||||| |||   || |||||| |  |||||||||||  |||||||||| | | || | |||| |||||||||||||    
T  23941105 tatttaaattttttaaaagataaatacaaggtg---tcatatataagcgatacacccaaagatgaaaatcacaatcatatatacgaggaacctcaaacca 23941201  T
Q  964 ccatcccaataaaac 978  Q
    || |||||| |||||    
T  23941202 ccctcccaaaaaaac 23941216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 873 - 955
Target Start/End: Complemental strand, 42600862 - 42600783
Alignment:
Q  873 tttttaaaagataaatacaatgtgccgtcgtatatatgttatacacccaaatgtgaaaatcactaccgtaaacacgatgaacc 955  Q
    ||||||||||||||||| || |||||||   ||||||||  |||||||||| |||||||| ||||||||| ||| || |||||    
T  42600862 tttttaaaagataaatataaggtgccgt---atatatgtggtacacccaaaggtgaaaatgactaccgtatacatgaggaacc 42600783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 850 - 955
Target Start/End: Complemental strand, 45475921 - 45475818
Alignment:
Q  850 aaaagaccaatattctatttaaattttt-aaaagataaatacaatgtgccgtcgtatatatgttatacacccaaatgtgaaaatcactaccgtaaacacg 948  Q
    |||||| |||| ||||||||| |||||| ||||||||||||||| ||||   ||||||||||   |||||||| | |||||||| ||||||||| ||| |    
T  45475921 aaaagagcaatgttctatttatattttttaaaagataaatacaaggtgc---cgtatatatgcggtacacccataggtgaaaatgactaccgtatacatg 45475825  T
Q  949 atgaacc 955  Q
    | |||||    
T  45475824 aggaacc 45475818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 802 - 841
Target Start/End: Complemental strand, 5942819 - 5942780
Alignment:
Q  802 tctgtaagtgaaaagagatccgtaataaaataaaaatgta 841  Q
    |||||||||||||||||  |||||||||||||||||||||    
T  5942819 tctgtaagtgaaaagaggaccgtaataaaataaaaatgta 5942780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 851 - 955
Target Start/End: Original strand, 23798261 - 23798363
Alignment:
Q  851 aaagaccaatattctatttaaatttt-taaaagataaatacaatgtgccgtcgtatatatgttatacacccaaatgtgaaaatcactaccgtaaacacga 949  Q
    ||||| |||| ||||||||| ||||| ||||||||||||| || ||||   ||||||||||   |||||||||| |||||||| ||||||||| ||| ||    
T  23798261 aaagagcaatgttctatttatattttttaaaagataaatataaggtgc---cgtatatatgcggtacacccaaaagtgaaaatgactaccgtatacatga 23798357  T
Q  950 tgaacc 955  Q
     |||||    
T  23798358 ggaacc 23798363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 776 - 841
Target Start/End: Original strand, 14509905 - 14509970
Alignment:
Q  776 cgttcctaagaatctagagattcagctctgtaagtgaaaagagatccgtaataaaataaaaatgta 841  Q
    |||||||| |||| | ||||||| | |||| ||||||||| ||  |||||||||||||||||||||    
T  14509905 cgttcctacgaatttggagattcggttctgcaagtgaaaataggcccgtaataaaataaaaatgta 14509970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 80; Significance: 5e-37; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 770 - 979
Target Start/End: Complemental strand, 45758691 - 45758482
Alignment:
Q  770 catggacgttcctaagaatctagagattcagctctgtaagtgaaaagagatccgtaataaaataaaaatgtannnnnnnn--aaaagaccaatattctat 867  Q
    ||||| |||||||| ||||| ||||  || ||||||||||||||||||| |||| |||||||||||||||||          |||||| |||| ||||||    
T  45758691 catggccgttcctacgaatccagaggctcggctctgtaagtgaaaagaggtccgaaataaaataaaaatgtatattttttttaaaagaacaatgttctat 45758592  T
Q  868 ttaaattttt-aaaagataaatacaatgtgccgtcgtatatatgttatacacccaaatgtgaaaatcactaccgtaaacacgatgaacctcaaaccacca 966  Q
    |||||||||| ||||||||||| ||| |||   | |||||||||||||||| ||||| |||||||||||||||||| ||| || ||||||||||||||||    
T  45758591 ttaaattttttaaaagataaatgcaaggtg---ttgtatatatgttatacatccaaaggtgaaaatcactaccgtatacatgaggaacctcaaaccacca 45758495  T
Q  967 tcccaataaaaca 979  Q
    |||||| ||||||    
T  45758494 tcccaaaaaaaca 45758482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 801 - 977
Target Start/End: Complemental strand, 5533476 - 5533302
Alignment:
Q  801 ctctgtaagtgaaaagagatccgtaataaaataaaaatgtannnnnnnnaaaagaccaatattctatttaaattttt--aaaagataaatacaatgtgcc 898  Q
    ||||||||||||||||||| |||||||||||||||||||||        |||||| |||||||||||||||||||||  |||||||||| |||| |||||    
T  5533476 ctctgtaagtgaaaagagacccgtaataaaataaaaatgtattttttt-aaaagaacaatattctatttaaatttttttaaaagataaacacaaggtgcc 5533378  T
Q  899 gtcgtatatatgttatacacccaaatgtgaaaatcactaccgtaaacacgatgaacctcaaaccaccatcccaataaaa 977  Q
    ||   ||||||| | ||||  |||| |||||||||||||||||| ||| || ||| |||||||||||||||||| ||||    
T  5533377 gt---atatatgatgtacaatcaaaggtgaaaatcactaccgtatacatgaggaaactcaaaccaccatcccaaaaaaa 5533302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 851 - 979
Target Start/End: Original strand, 38547035 - 38547161
Alignment:
Q  851 aaagaccaatattctatttaaattttt-aaaagataaatacaatgtgccgtcgtatatatgttatacacccaaatgtgaaaatcactaccgtaaacacga 949  Q
    ||||| |||| |||||||||||||||| ||||||||||||||| |||||||   ||||||||  |||||||||||||||||||||||| | || ||| ||    
T  38547035 aaagatcaatgttctatttaaattttttaaaagataaatacaaggtgccgt---atatatgtggtacacccaaatgtgaaaatcactatcatatacatga 38547131  T
Q  950 tgaacctcaaaccaccatcccaataaaaca 979  Q
     ||||||||||||||| |||||| ||||||    
T  38547132 ggaacctcaaaccaccctcccaaaaaaaca 38547161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 804 - 981
Target Start/End: Original strand, 43235720 - 43235897
Alignment:
Q  804 tgtaagtgaaaagagatccgtaataaaataaaaatgtannnnnnnnaaaagaccaatattctatttaaattttta---aaagataaatacaatgtgccgt 900  Q
    |||||||||||||||  | |||||||||||||||||||         |||||  ||| ||||||||||||||||    ||||||||||||||  ||   |    
T  43235720 tgtaagtgaaaagaggcctgtaataaaataaaaatgtatttttttctaaagaaaaatgttctatttaaatttttttttaaagataaatacaagatg---t 43235816  T
Q  901 cgtatatatgttatacacccaaatgtgaaaatcactaccgtaaacacgatgaacctcaaaccaccatcccaataaaacatc 981  Q
    |||||||||| | |||||||||| ||||||||||||| |||| ||| || |||||||||||||||||||||| ||||||||    
T  43235817 cgtatatatgatgtacacccaaaggtgaaaatcactatcgtatacatgaggaacctcaaaccaccatcccaaaaaaacatc 43235897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 776 - 965
Target Start/End: Complemental strand, 6221865 - 6221680
Alignment:
Q  776 cgttcctaagaatctagagattcagctctgtaagtgaaaagagatccgtaataaaataaaaatgtannnnnnnnaaaagaccaatattctatttaaattt 875  Q
    |||| ||| |||||| |||| || | ||||||| |||||||||| |||||||||||||||||| ||        ||| || |||| ||||||||||||||    
T  6221865 cgtttctacgaatctggagactcggttctgtaaatgaaaagagacccgtaataaaataaaaatttattttttttaaa-gaacaatgttctatttaaattt 6221767  T
Q  876 ttaaaagataaatacaatgtgccgtcgtatatatgttatacacccaaatgtgaaaatcactaccgtaaacacgatgaacctcaaaccacc 965  Q
    |||||||||||||||||||||||||   ||||| |   |||| | |||||||||||||| || |||| | | || |||||||||||||||    
T  6221766 ttaaaagataaatacaatgtgccgt---atataagcggtacatcaaaatgtgaaaatcattatcgtatatatgaggaacctcaaaccacc 6221680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 800 - 979
Target Start/End: Original strand, 39134668 - 39134848
Alignment:
Q  800 gctctgtaagtgaaaagagatccgtaataaaataaaaatgtannnnnnnn--aaaagaccaatattctatttaaattttt--aaaagataaatacaatgt 895  Q
    |||| |||||||||||||||  |||||||||||||||| |||          |||||| |||| ||||||||||||||||  ||||||||||||||| ||    
T  39134668 gctccgtaagtgaaaagagactcgtaataaaataaaaacgtattttttttttaaaagaacaatgttctatttaaattttttaaaaagataaatacaaggt 39134767  T
Q  896 gccgtcgtatatatgttatacacccaaatgtgaaaatcactaccgtaaacacgatgaacctcaaaccaccatcccaataaaaca 979  Q
    || ||   |||||||  ||||||||||| |||| ||||||||| ||| ||| || ||||||||||||||| |||||| ||||||    
T  39134768 gctgt---atatatgcaatacacccaaaggtgataatcactactgtatacatgaggaacctcaaaccaccctcccaaaaaaaca 39134848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 862 - 972
Target Start/End: Complemental strand, 38853625 - 38853518
Alignment:
Q  862 ttctatttaaatttttaaaa-gataaatacaatgtgccgtcgtatatatgttatacacccaaatgtgaaaatcactaccgtaaacacgatgaacctcaaa 960  Q
    |||||||||||||||| ||| ||||||||||| |||   ||||||||||||| || | ||||| |||||||||||||||||| ||| || ||||||||||    
T  38853625 ttctatttaaattttttaaatgataaatacaaggtg---tcgtatatatgttgtatatccaaaggtgaaaatcactaccgtatacatga-gaacctcaaa 38853530  T
Q  961 ccaccatcccaa 972  Q
    ||| ||||||||    
T  38853529 ccatcatcccaa 38853518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 850 - 965
Target Start/End: Original strand, 10925951 - 10926065
Alignment:
Q  850 aaaagaccaatattctatttaa--atttttaaaagataaatacaatgtgccgtcgtatatatgttatacacccaaatgtgaaaatcactaccgtaaacac 947  Q
    |||||| |||||||||||||||  |||||||||| |||||||||||||||   ||||||||||  || || |||||  ||||||||||||||||| |||     
T  10925951 aaaagaacaatattctatttaagtatttttaaaaaataaatacaatgtgc---cgtatatatgagatgcatccaaagatgaaaatcactaccgtatacat 10926047  T
Q  948 gatgaacctcaaaccacc 965  Q
    || || ||||||| ||||    
T  10926048 gaggatcctcaaatcacc 10926065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 873 - 957
Target Start/End: Complemental strand, 6771882 - 6771801
Alignment:
Q  873 tttttaaaagataaatacaatgtgccgtcgtatatatgttatacacccaaatgtgaaaatcactaccgtaaacacgatgaacctc 957  Q
    |||||||||||||||||||| ||||   ||||||||||   |||||||| | |||||||| ||||||||| |||||| |||||||    
T  6771882 tttttaaaagataaatacaaggtgc---cgtatatatgcggtacacccagaggtgaaaatgactaccgtatacacgaggaacctc 6771801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 850 - 955
Target Start/End: Complemental strand, 5316795 - 5316692
Alignment:
Q  850 aaaagaccaatattctatttaaattttt-aaaagataaatacaatgtgccgtcgtatatatgttatacacccaaatgtgaaaatcactaccgtaaacacg 948  Q
    |||||| |||| ||||||||| |||||| ||||||||||||||| ||||   ||||||||||   |||||||| | |||||||| ||||||||| ||| |    
T  5316795 aaaagagcaatgttctatttatattttttaaaagataaatacaaggtgc---cgtatatatgcggtacacccagaggtgaaaatgactaccgtatacatg 5316699  T
Q  949 atgaacc 955  Q
    | |||||    
T  5316698 aggaacc 5316692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 850 - 955
Target Start/End: Complemental strand, 23185542 - 23185439
Alignment:
Q  850 aaaagaccaatattctatttaaattttt-aaaagataaatacaatgtgccgtcgtatatatgttatacacccaaatgtgaaaatcactaccgtaaacacg 948  Q
    |||||| |||| ||||||||| |||||| ||||||||||||||| ||||   ||||||||||   |||||||| | |||||||| ||||||||| ||| |    
T  23185542 aaaagagcaatgttctatttatattttttaaaagataaatacaaggtgc---cgtatatatgcggtacacccataggtgaaaatgactaccgtatacatg 23185446  T
Q  949 atgaacc 955  Q
    | |||||    
T  23185445 aggaacc 23185439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 852 - 955
Target Start/End: Original strand, 1366878 - 1366979
Alignment:
Q  852 aagaccaatattctatttaaatttt-taaaagataaatacaatgtgccgtcgtatatatgttatacacccaaatgtgaaaatcactaccgtaaacacgat 950  Q
    |||| |||| ||||||||| ||||| ||||||||||||| || ||||   ||||||||||   ||||||||||  ||||||| ||||||||| ||||||     
T  1366878 aagagcaatgttctatttatattttttaaaagataaatataaggtgc---cgtatatatgcggtacacccaaagatgaaaatgactaccgtatacacgag 1366974  T
Q  951 gaacc 955  Q
    |||||    
T  1366975 gaacc 1366979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 857 - 955
Target Start/End: Complemental strand, 27559745 - 27559649
Alignment:
Q  857 caatattctatttaaattttt-aaaagataaatacaatgtgccgtcgtatatatgttatacacccaaatgtgaaaatcactaccgtaaacacgatgaacc 955  Q
    |||| ||||||||| |||||| |||||||||||| || |||   |||||||||||   |||||||||| |||||||| ||||||||| ||| || |||||    
T  27559745 caatgttctatttatattttttaaaagataaatataaggtg---tcgtatatatgcggtacacccaaaggtgaaaatgactaccgtatacatgaggaacc 27559649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1590 (Bit Score: 73; Significance: 8e-33; HSPs: 1)
Name: scaffold1590
Description:

Target: scaffold1590; HSP #1
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 800 - 977
Target Start/End: Original strand, 207 - 382
Alignment:
Q  800 gctctgtaagtgaaaagagatccgtaataaaataaaaatgtannnnnnnnaaaagaccaatattctatttaaattttt-aaaagataaatacaatgtgcc 898  Q
    |||||| ||||||| ||||  || ||||||||||||||||||        |||||| |||| |||||||||||||||| ||||||||||||||| |||      
T  207 gctctgcaagtgaatagaggcccataataaaataaaaatgtatttttattaaaagaacaatgttctatttaaattttttaaaagataaatacaaggtg-- 304  T
Q  899 gtcgtatatatgttatacacccaaatgtgaaaatcactaccgtaaacacgatgaacctcaaaccaccatcccaataaaa 977  Q
     |||||||||||   ||||||||||||||||||||||||||||| ||| |||||||||||||||||| |||||| ||||    
T  305 -tcgtatatatgcggtacacccaaatgtgaaaatcactaccgtatacatgatgaacctcaaaccaccctcccaaaaaaa 382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 8e-33; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 777 - 979
Target Start/End: Original strand, 21665627 - 21665826
Alignment:
Q  777 gttcctaagaatctagagattcagctctgtaagtgaaaagagatccgtaataaaataaaaatgtannnnnnnnaaaagaccaatattctatttaaatttt 876  Q
    ||||||| |||||| |||  || |||||||||||||||||||| |||||||||||||||||||||        |||||| |||| |||||||||||||||    
T  21665627 gttcctacgaatctggagggtcggctctgtaagtgaaaagagacccgtaataaaataaaaatgtattttttt-aaaagaacaatgttctatttaaatttt 21665725  T
Q  877 t-aaaagataaatacaatgtgccgtcgtatatatgttatacacccaaatgtgaaaatcactaccgtaaacacgatgaacctcaaaccaccatcccaataa 975  Q
    | ||||||||||||||  |||   |||||||||||| ||||| | |||||||||||||||||||||| ||| || ||||| ||||||||| ||| || ||    
T  21665726 ttaaaagataaatacacggtg---tcgtatatatgtgatacatcaaaatgtgaaaatcactaccgtatacatgaggaaccacaaaccaccctcctaaaaa 21665822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 800 - 977
Target Start/End: Complemental strand, 16097161 - 16096986
Alignment:
Q  800 gctctgtaagtgaaaagagatccgtaataaaataaaaatgtannnnnnnnaaaagaccaatattctatttaaattttt-aaaagataaatacaatgtgcc 898  Q
    ||||||||||||||||| |  ||||||||||||||| |||||        |||||| |||| |||||||||||||||| ||||||||||||||| |||||    
T  16097161 gctctgtaagtgaaaagtggcccgtaataaaataaatatgtattttgtttaaaagaacaatgttctatttaaattttttaaaagataaatacaaggtgcc 16097062  T
Q  899 gtcgtatatatgttatacacccaaatgtgaaaatcactaccgtaaacacgatgaacctcaaaccaccatcccaataaaa 977  Q
    ||   ||||||| | |||||||||| |||||||| |||||| || ||| || ||||||||||||||||| |||| ||||    
T  16097061 gt---atatatgatgtacacccaaaggtgaaaattactaccttatacatgaggaacctcaaaccaccattccaaaaaaa 16096986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 801 - 979
Target Start/End: Original strand, 13800494 - 13800671
Alignment:
Q  801 ctctgtaagtgaaaagagatccgtaataaaataaaaatgtannnnnnnnaaaagaccaatattctatttaaattttt-aaaagataaatacaatgtgccg 899  Q
    |||||||||||||||||| | ||||||||||||||||||||        |||||| |||| |||||||||||||||| |||||||||||| || ||||||    
T  13800494 ctctgtaagtgaaaagaggttcgtaataaaataaaaatgtatttttttaaaaagaacaatgttctatttaaattttttaaaagataaatataaggtgccg 13800593  T
Q  900 tcgtatatatgttatacacccaaatg-tgaaaatcactaccgtaaacacgatgaacctcaaaccaccatcccaataaaaca 979  Q
    |   |||||||  ||||||||||| | |||||||||||||  || |||||| |||||||||| |||| |||||| ||||||    
T  13800594 t---atatatgcgatacacccaaaaggtgaaaatcactactatatacacgaggaacctcaaatcaccttcccaaaaaaaca 13800671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 800 - 965
Target Start/End: Complemental strand, 38400951 - 38400788
Alignment:
Q  800 gctctgtaagtgaaaagagatccgtaataaaataaaaatgtannnnnnnnaaaagaccaatattctatttaaattttt-aaaagataaatacaatgtgcc 898  Q
    |||||||||||||||||||| ||| |||||||||||||  ||        | |||| |||| |||||||||||||||| ||||||||||||||| |||      
T  38400951 gctctgtaagtgaaaagagacccgcaataaaataaaaacatatattttttataagaacaatgttctatttaaattttttaaaagataaatacaaggtg-- 38400854  T
Q  899 gtcgtatatatgttatacacccaaatgtgaaaatcactaccgtaaacacgatgaacctcaaaccacc 965  Q
     || ||||||||  |||||  |||| |||||||||||||||||| ||| || |||||||||||||||    
T  38400853 -tcatatatatgcgatacattcaaaggtgaaaatcactaccgtatacatgaggaacctcaaaccacc 38400788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 804 - 979
Target Start/End: Original strand, 24035498 - 24035671
Alignment:
Q  804 tgtaagtgaaaagagatccgtaataaaataaaaatgtannnnnnnnaaaagaccaatattctatttaaattttt-aaaagataaatacaatgtgccgtcg 902  Q
    ||||||||||||||   ||||||||||||||||| |||        |||||| |||| |||||||||||||||| ||||||||||||||| |||||||      
T  24035498 tgtaagtgaaaagatgcccgtaataaaataaaaacgtatttcttttaaaagaacaatgttctatttaaattttttaaaagataaatacaaggtgccgt-- 24035595  T
Q  903 tatatatgttatacacccaaatgtgaaaatcactaccgtaaacacgatgaacctcaaaccaccatcccaataaaaca 979  Q
     ||| |||  ||||||| ||| |||||||||||||||| | ||| || ||| | ||||||||| |||||| ||||||    
T  24035596 -ataaatgcgatacacctaaaggtgaaaatcactaccgcatacatgaggaatcgcaaaccaccctcccaaaaaaaca 24035671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 850 - 980
Target Start/End: Original strand, 12134039 - 12134167
Alignment:
Q  850 aaaagaccaatattctatttaaatt-tttaaaagataaatacaatgtgccgtcgtatatatgttatacacccaaatgtgaaaatcactaccgtaaacacg 948  Q
    |||||| |||| |||||||||||   |||||||||||||||||| || ||||   |||||||  ||||||||||| |||||||||||||||||| |||      
T  12134039 aaaagaacaatgttctatttaaaaaatttaaaagataaatacaaggtaccgt---atatatgcgatacacccaaaagtgaaaatcactaccgtatacatt 12134135  T
Q  949 atgaacctcaaaccaccatcccaataaaacat 980  Q
    | ||||||||||||||| |||||  |||||||    
T  12134136 aggaacctcaaaccaccctcccacaaaaacat 12134167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 804 - 972
Target Start/End: Original strand, 28425660 - 28425829
Alignment:
Q  804 tgtaagtgaaaagagatccgtaataaaataaaaatgtannnnnnnn---aaaagaccaatattctatttaaat-ttttaaaagataaatacaatgtgccg 899  Q
    ||||| ||||||||| ||||||||||||||||||||||           |||||| |||| |||||||||||  ||||||||||||||||||| |||       
T  28425660 tgtaaatgaaaagaggtccgtaataaaataaaaatgtatttttttttttaaaagaacaatgttctatttaaaaattttaaaagataaatacaaggtg--- 28425756  T
Q  900 tcgtatatatgttatacacccaaatgtgaaaatcactaccgtaaacacgatgaacctcaaaccaccatcccaa 972  Q
    |||||||||||   |||||||||||||||||||||||||| || | | || ||||||||| || || ||||||    
T  28425757 tcgtatatatgcagtacacccaaatgtgaaaatcactaccatatatatgaggaacctcaagcctccctcccaa 28425829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 899 - 979
Target Start/End: Complemental strand, 37182726 - 37182646
Alignment:
Q  899 gtcgtatatatgttatacacccaaatgtgaaaatcactaccgtaaacacgatgaacctcaaaccaccatcccaataaaaca 979  Q
    ||||||||||||  ||||||||||| |||||||||||||||||| ||| || |||||||||| |||| |||||| ||||||    
T  37182726 gtcgtatatatgcaatacacccaaaagtgaaaatcactaccgtatacatgaggaacctcaaatcaccctcccaaaaaaaca 37182646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 851 - 972
Target Start/End: Original strand, 16227368 - 16227487
Alignment:
Q  851 aaagaccaatattctatttaaatttt-taaaagataaatacaatgtgccgtcgtatatatgttatacacccaaatgtgaaaatcactaccgtaaacacga 949  Q
    ||||| |||| ||||||||||||||| |||||||||||||||| ||   ||||||||||||| ||||||| | |  |||||||||||||  || |||  |    
T  16227368 aaagaacaattttctatttaaattttttaaaagataaatacaaggt---gtcgtatatatgtgatacaccgatagatgaaaatcactactatatacataa 16227464  T
Q  950 tgaacctcaaaccaccatcccaa 972  Q
     ||||||||||||||| ||||||    
T  16227465 ggaacctcaaaccaccctcccaa 16227487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 797 - 841
Target Start/End: Original strand, 44914850 - 44914894
Alignment:
Q  797 tcagctctgtaagtgaaaagagatccgtaataaaataaaaatgta 841  Q
    |||||||||||||||||||||| ||||||||||||||||||||||    
T  44914850 tcagctctgtaagtgaaaagaggtccgtaataaaataaaaatgta 44914894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 851 - 977
Target Start/End: Original strand, 11912757 - 11912881
Alignment:
Q  851 aaagaccaatattctatttaaatttttaaaaga-taaatacaatgtgccgtcgtatatatgttatacacccaaatgtgaaaatcactaccgtaaacacga 949  Q
    ||||| |||| ||||||||||||||  |||| | ||||||||| |||||||   |||||||  ||||| |||||  ||||||||||||||||| |||  |    
T  11912757 aaagaacaatgttctatttaaatttaaaaaaaaataaatacaaagtgccgt---atatatgcaatacatccaaagatgaaaatcactaccgtatacataa 11912853  T
Q  950 tgaacctcaaaccaccatcccaataaaa 977  Q
     ||||||||||||||| |||||| ||||    
T  11912854 ggaacctcaaaccaccctcccaaaaaaa 11912881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 776 - 837
Target Start/End: Complemental strand, 37182821 - 37182760
Alignment:
Q  776 cgttcctaagaatctagagattcagctctgtaagtgaaaagagatccgtaataaaataaaaa 837  Q
    ||||||||||||||  |||  || |||||||||||||||||||| |||||||||||||||||    
T  37182821 cgttcctaagaatccggaggctcggctctgtaagtgaaaagagacccgtaataaaataaaaa 37182760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 873 - 937
Target Start/End: Complemental strand, 10252495 - 10252431
Alignment:
Q  873 tttttaaaagataaatacaatgtgccgtcgtatatatgttatacacccaaatgtgaaaatcacta 937  Q
    |||||||||||||||||||| ||| ||||||||||||  || ||||||||| ||||||| |||||    
T  10252495 tttttaaaagataaatacaaggtgtcgtcgtatatatactacacacccaaaggtgaaaaccacta 10252431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 800 - 838
Target Start/End: Complemental strand, 12694832 - 12694794
Alignment:
Q  800 gctctgtaagtgaaaagagatccgtaataaaataaaaat 838  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  12694832 gctctgtaagtgaaaagagacccgtaataaaataaaaat 12694794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 878 - 970
Target Start/End: Original strand, 22727530 - 22727619
Alignment:
Q  878 aaaagataaatacaatgtgccgtcgtatatatgttatacacccaaatgtgaaaatcactaccgtaaacacgatgaacctcaaaccaccatccc 970  Q
    ||||||||||||| ||||| |||   |||||||   |||||||||| ||||||||||||||| || ||| ||| | |||||||||||||||||    
T  22727530 aaaagataaatactatgtgacgt---atatatgcggtacacccaaaagtgaaaatcactaccatatacatgataaccctcaaaccaccatccc 22727619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 850 - 955
Target Start/End: Complemental strand, 6965110 - 6965007
Alignment:
Q  850 aaaagaccaatattctatttaaattttt-aaaagataaatacaatgtgccgtcgtatatatgttatacacccaaatgtgaaaatcactaccgtaaacacg 948  Q
    |||||| |||| ||||||||| |||||| ||||||||||||||| ||||   ||||||||||   |||||||| | |||||||| ||||||||| ||| |    
T  6965110 aaaagagcaatgttctatttatattttttaaaagataaatacaaagtgc---cgtatatatgcggtacacccagaggtgaaaatgactaccgtatacatg 6965014  T
Q  949 atgaacc 955  Q
    | |||||    
T  6965013 aggaacc 6965007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 899 - 979
Target Start/End: Original strand, 11952652 - 11952732
Alignment:
Q  899 gtcgtatatatgttatacacccaaatgtgaaaatcactaccgtaaacacgatgaacctcaaaccaccatcccaataaaaca 979  Q
    ||||||||||||| |||||| || |  ||||||||||||| | | ||| || ||||||||||||||| |||||| ||||||    
T  11952652 gtcgtatatatgtgatacactcatagatgaaaatcactactgcatacatgaggaacctcaaaccaccctcccaaaaaaaca 11952732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 850 - 955
Target Start/End: Original strand, 12337447 - 12337550
Alignment:
Q  850 aaaagaccaatattctatttaaatttt-taaaagataaatacaatgtgccgtcgtatatatgttatacacccaaatgtgaaaatcactaccgtaaacacg 948  Q
    |||||| |||| ||||||||| ||||| |||||||||||||||| ||   ||| |||||||||  |||||||| | |||||||| ||||||||| ||| |    
T  12337447 aaaagagcaatgttctatttatattttttaaaagataaatacaaggt---gtcatatatatgtggtacacccagaggtgaaaatgactaccgtatacatg 12337543  T
Q  949 atgaacc 955  Q
    | |||||    
T  12337544 aggaacc 12337550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 850 - 955
Target Start/End: Original strand, 29939861 - 29939964
Alignment:
Q  850 aaaagaccaatattctatttaaatttttaa-aagataaatacaatgtgccgtcgtatatatgttatacacccaaatgtgaaaatcactaccgtaaacacg 948  Q
    |||||| |||| ||||||||| |||||| | ||||||||||||| |||   |||||||||||   |||||||||| |||||||| ||||||||| ||| |    
T  29939861 aaaagagcaatgttctatttatattttttacaagataaatacaaggtg---tcgtatatatgcggtacacccaaaggtgaaaatgactaccgtatacatg 29939957  T
Q  949 atgaacc 955  Q
    | |||||    
T  29939958 aggaacc 29939964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 769 - 841
Target Start/End: Complemental strand, 42029333 - 42029261
Alignment:
Q  769 tcatggacgttcctaagaatctagagattcagctctgtaagtgaaaagagatccgtaataaaataaaaatgta 841  Q
    |||||| ||||||||||||||| |||  || | | ||||||||||||||| | |||||||| |||||||||||    
T  42029333 tcatggtcgttcctaagaatctggaggctcggttttgtaagtgaaaagaggttcgtaataatataaaaatgta 42029261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 851 - 955
Target Start/End: Original strand, 10762565 - 10762667
Alignment:
Q  851 aaagaccaatattctatttaaatttt-taaaagataaatacaatgtgccgtcgtatatatgttatacacccaaatgtgaaaatcactaccgtaaacacga 949  Q
    ||||| |||| ||||||||| ||||| ||||||||||||| || ||||    ||||||||||  |||||||||| |||||||| ||||||||| ||| ||    
T  10762565 aaagagcaatgttctatttatattttttaaaagataaatataaggtgc---ggtatatatgtggtacacccaaaggtgaaaatgactaccgtatacatga 10762661  T
Q  950 tgaacc 955  Q
     |||||    
T  10762662 ggaacc 10762667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 802 - 837
Target Start/End: Original strand, 11952540 - 11952575
Alignment:
Q  802 tctgtaagtgaaaagagatccgtaataaaataaaaa 837  Q
    |||||||||||||||||| |||||||||||||||||    
T  11952540 tctgtaagtgaaaagagacccgtaataaaataaaaa 11952575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 850 - 955
Target Start/End: Complemental strand, 9046133 - 9046029
Alignment:
Q  850 aaaagaccaatattctatttaaattttt--aaaagataaatacaatgtgccgtcgtatatatgttatacacccaaatgtgaaaatcactaccgtaaacac 947  Q
    |||||| |||| ||||||||| ||||||  |||||||||||| || ||||   ||||||||||   |||||||||| |||||||| ||||||||| |||     
T  9046133 aaaagaacaatgttctatttatatttttttaaaagataaatataaggtgc---cgtatatatgcggtacacccaaaggtgaaaatgactaccgtatacat 9046037  T
Q  948 gatgaacc 955  Q
    || |||||    
T  9046036 gaggaacc 9046029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 800 - 837
Target Start/End: Original strand, 11912705 - 11912742
Alignment:
Q  800 gctctgtaagtgaaaagagatccgtaataaaataaaaa 837  Q
    ||||| |||||||||||| |||||||||||||||||||    
T  11912705 gctctataagtgaaaagatatccgtaataaaataaaaa 11912742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 857 - 955
Target Start/End: Complemental strand, 24410533 - 24410437
Alignment:
Q  857 caatattctatttaaattttt-aaaagataaatacaatgtgccgtcgtatatatgttatacacccaaatgtgaaaatcactaccgtaaacacgatgaacc 955  Q
    |||| ||||||||| |||||| |||||||||||| || ||||   ||||||||||   |||||||||| |||||||| ||||||||| ||| || |||||    
T  24410533 caatgttctatttatattttttaaaagataaatataaggtgc---cgtatatatgcggtacacccaaaggtgaaaatgactaccgtatacatgaggaacc 24410437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 3e-29; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 800 - 972
Target Start/End: Complemental strand, 52468444 - 52468275
Alignment:
Q  800 gctctgtaagtgaaaagagatccgtaataaaataaaaatgtannnnnnnnaaaagaccaatattctatttaaattttt-aaaagataaatacaatgtgcc 898  Q
    |||||||| |||||||||| || ||||||||||||||| |||        |||||| |||| |||||||||||||||| ||||||||||||||| |||||    
T  52468444 gctctgtaggtgaaaagaggtctgtaataaaataaaaacgtattttttt-aaaagaacaatgttctatttaaattttttaaaagataaatacaaggtgcc 52468346  T
Q  899 gtcgtatatatgttatacacccaaatgtgaaaatcactaccgtaaacacgatgaacctcaaaccaccatcccaa 972  Q
    ||   |||||||||||||| ||||| ||||||||||||||||||  || || ||||||||||||||| ||||||    
T  52468345 gt---atatatgttatacatccaaaggtgaaaatcactaccgtatgcatgaggaacctcaaaccaccttcccaa 52468275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 776 - 965
Target Start/End: Original strand, 10041923 - 10042111
Alignment:
Q  776 cgttcctaagaatctagagattcagctctgtaagtgaaaagagatccgtaataaaataaaaatgtannnnnnnn-aaaagaccaatattctatttaaatt 874  Q
    |||||||| |||||  ||| ||||| ||||||||||||||||| |||||| ||||||||||  |||         |||||| |||| |||||||||||||    
T  10041923 cgttcctacgaatcgggaggttcagttctgtaagtgaaaagaggtccgtagtaaaataaaagcgtatttttttttaaaagaacaatgttctatttaaatt 10042022  T
Q  875 tttaaaaga-taaatacaatgtgccgtcgtatatatgttatacacccaaatgtgaaaatcactaccgtaaacacgatgaacctcaaaccacc 965  Q
    ||||||| | ||||||||| |||||||   || ||||| ||||||| |||||||||||||||||||||| ||| || |||||||||| ||||    
T  10042023 tttaaaaaaataaatacaaggtgccgt---atgtatgtgatacacctaaatgtgaaaatcactaccgtatacaggaggaacctcaaatcacc 10042111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 802 - 979
Target Start/End: Original strand, 39329342 - 39329517
Alignment:
Q  802 tctgtaagtgaaaagagatccgtaataaaataaaaatgtannnnnnnnaaaagaccaatattctatttaaattttt-aaaagataaatacaatgtgccgt 900  Q
    ||||||||||||||||| ||||||||||||||||||  ||        |||||| |||| |||| ||||||||||| ||||||||||||||| |||   |    
T  39329342 tctgtaagtgaaaagaggtccgtaataaaataaaaacatattttttttaaaagaacaatgttctctttaaattttttaaaagataaatacaaggtg---t 39329438  T
Q  901 cgtatatatgttatacacccaaatgtgaaaatcactaccgtaaacacgatgaacctcaaaccaccatcccaataaaaca 979  Q
     |||||||||| |||||||||||  ||||||||  ||||||| ||| || |||| |||||||||| |||||| ||||||    
T  39329439 tgtatatatgtgatacacccaaagatgaaaatccataccgtatacaggaggaacatcaaaccaccctcccaaaaaaaca 39329517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 802 - 971
Target Start/End: Complemental strand, 27112186 - 27112020
Alignment:
Q  802 tctgtaagtgaaaagagatccgtaataaaataaaaatgtannnnnnnnaaaagaccaatattctatttaaattttt-aaaagataaatacaatgtgccgt 900  Q
    |||||||||||||||||| |||||||||||||| | ||||        ||| || |||| ||| |||||||||||| ||||||||||||||| ||   |     
T  27112186 tctgtaagtgaaaagagacccgtaataaaataagattgtattttttt-aaacgaacaatgttcaatttaaattttttaaaagataaatacaaggt---ga 27112091  T
Q  901 cgtatatatgttatacacccaaatgtgaaaatcactaccgtaaacacgatgaacctcaaaccaccatccca 971  Q
    | ||||||||  ||||||| |||||||||||||||||||||| ||| || ||||||||||||||| |||||    
T  27112090 catatatatgcgatacaccaaaatgtgaaaatcactaccgtatacatgaggaacctcaaaccaccctccca 27112020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 857 - 965
Target Start/End: Original strand, 36118463 - 36118569
Alignment:
Q  857 caatattctatttaaattttt-aaaagataaatacaatgtgccgtcgtatatatgttatacacccaaatgtgaaaatcactaccgtaaacacgatgaacc 955  Q
    |||| |||||||||||||||| ||||||||||||||| |||   |||||||||||| |||||||||||| ||||||||||||||||| ||| ||  ||||    
T  36118463 caatgttctatttaaattttttaaaagataaatacaaggtg---tcgtatatatgtgatacacccaaatatgaaaatcactaccgtatacatgagtaacc 36118559  T
Q  956 tcaaaccacc 965  Q
    || |||||||    
T  36118560 tctaaccacc 36118569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 857 - 979
Target Start/End: Complemental strand, 36178774 - 36178655
Alignment:
Q  857 caatattctatttaaatt-tttaaaagataaatacaatgtgccgtcgtatatatgttatacacccaaatgtgaaaatcactaccgtaaacacgatgaacc 955  Q
    |||| ||||||||||||| |||||||||||||||||| |||   |||||||||||  ||||||||||||||||||||||||||| || ||| || ||| |    
T  36178774 caatgttctatttaaattatttaaaagataaatacaaggtg---tcgtatatatgcgatacacccaaatgtgaaaatcactaccttatacatgaagaatc 36178678  T
Q  956 tcaaaccaccatcccaataaaaca 979  Q
     ||||||||| |||||| ||||||    
T  36178677 -caaaccaccctcccaaaaaaaca 36178655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 797 - 961
Target Start/End: Complemental strand, 24397097 - 24396934
Alignment:
Q  797 tcagctctgtaagtgaaaagagatccgtaataaaataaaaatgtannnnnnnn-aaaagaccaatattctatttaaattttt-aaaagataaatacaatg 894  Q
    |||||||||||||||||||||||   ||||||||||||||| |||         |||||| ||||||| ||||||||||||| |||||||||||| || |    
T  24397097 tcagctctgtaagtgaaaagagacatgtaataaaataaaaacgtatttttttttaaaagaacaatattttatttaaattttttaaaagataaatataagg 24396998  T
Q  895 tgccgtcgtatatatgttatacacccaaatgtgaaaatcactaccgtaaacacgatgaacctcaaac 961  Q
    ||| ||   |||||||| |||||| |||| ||||||||||||| |||| ||| || |||||||||||    
T  24396997 tgcagt---atatatgtgatacactcaaaggtgaaaatcactatcgtatacatgaggaacctcaaac 24396934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 850 - 979
Target Start/End: Original strand, 51691913 - 51692042
Alignment:
Q  850 aaaagaccaatattctatttaaattttt-aaaagataaatacaatgtgccgtcgtatatatgttatacacccaaat--gtgaaaatcactaccgtaaaca 946  Q
    |||||| |||| |||||||||||||||| ||||||||||||||| |||||||   |||||||   |||||| |||   ||||||||||||||| || |||    
T  51691913 aaaagagcaatgttctatttaaattttttaaaagataaatacaaggtgccgt---atatatgcggtacaccaaaaaaagtgaaaatcactaccatataca 51692009  T
Q  947 cgatgaacctcaaaccaccatcccaataaaaca 979  Q
    ||||||||||||||||||| ||| || ||||||    
T  51692010 cgatgaacctcaaaccaccctccgaaaaaaaca 51692042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 873 - 965
Target Start/End: Original strand, 4167913 - 4168002
Alignment:
Q  873 tttttaaaagataaatacaatgtgccgtcgtatatatgttatacacccaaatgtgaaaatcactaccgtaaacacgatgaacctcaaaccacc 965  Q
    |||||||||||||||||||| |||||||   |||||||  ||||||||||| ||||||||||||||| || ||| || |||||||||| ||||    
T  4167913 tttttaaaagataaatacaaggtgccgt---atatatgcgatacacccaaaggtgaaaatcactaccttatacatgaggaacctcaaatcacc 4168002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 873 - 965
Target Start/End: Original strand, 36362893 - 36362981
Alignment:
Q  873 tttttaaaagataaatacaatgtgccgtcgtatatatgttatacacccaaatgtgaaaatcactaccgtaaacacgatgaacctcaaaccacc 965  Q
    |||||||||||||||||||| |||||||   |||||||  ||||||||||||||| ||||||||||| || |||  | |||||||||||||||    
T  36362893 tttttaaaagataaatacaaagtgccgt---atatatgcaatacacccaaatgtggaaatcactaccatataca-taggaacctcaaaccacc 36362981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 800 - 841
Target Start/End: Complemental strand, 5893171 - 5893130
Alignment:
Q  800 gctctgtaagtgaaaagagatccgtaataaaataaaaatgta 841  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  5893171 gctctgtaagtgaaaagaggtccgtaataaaataaaaatgta 5893130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 862 - 966
Target Start/End: Original strand, 37744919 - 37745022
Alignment:
Q  862 ttctatttaaattttt--aaaagataaatacaatgtgccgtcgtatatatgttatacacccaaatgtgaaaatcactaccgtaaacacgatgaacctcaa 959  Q
    ||||||||||||||||  |||||||||||| || |||   ||| |||||||  ||||| ||||| |||||||||||||||||| ||  || |||||||||    
T  37744919 ttctatttaaatttttttaaaagataaatataaggtg---tcgcatatatgcgatacatccaaaggtgaaaatcactaccgtatacttgaggaacctcaa 37745015  T
Q  960 accacca 966  Q
    |||||||    
T  37745016 accacca 37745022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 776 - 836
Target Start/End: Complemental strand, 24614137 - 24614077
Alignment:
Q  776 cgttcctaagaatctagagattcagctctgtaagtgaaaagagatccgtaataaaataaaa 836  Q
    ||||| || |||||| ||| |||||||||||||||||||||||  ||||||||||||||||    
T  24614137 cgttcttacgaatctggaggttcagctctgtaagtgaaaagaggcccgtaataaaataaaa 24614077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 850 - 955
Target Start/End: Complemental strand, 54780886 - 54780783
Alignment:
Q  850 aaaagaccaatattctatttaaattttt-aaaagataaatacaatgtgccgtcgtatatatgttatacacccaaatgtgaaaatcactaccgtaaacacg 948  Q
    |||||| |||| ||||||||| |||||| ||||||||||||||| ||||   ||||||||||   |||||||||| |||||||| ||||||||| ||| |    
T  54780886 aaaagagcaatgttctatttatattttttaaaagataaatacaaggtgc---cgtatatatgcggtacacccaaaggtgaaaatgactaccgtatacatg 54780790  T
Q  949 atgaacc 955  Q
    | |||||    
T  54780789 aggaacc 54780783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 857 - 961
Target Start/End: Original strand, 2135326 - 2135428
Alignment:
Q  857 caatattctatttaaa-tttttaaaagataaatacaatgtgccgtcgtatatatgttatacacccaaatgtgaaaatcactaccgtaaacacgatgaacc 955  Q
    |||||||||||||||| |||||||||||||||||||| ||   ||||||||||||  ||||| ||||| || || ||||||| |||| | | || |||||    
T  2135326 caatattctatttaaattttttaaaagataaatacaaggt---gtcgtatatatgcgatacatccaaaggtaaacatcactatcgtatatatgaggaacc 2135422  T
Q  956 tcaaac 961  Q
    ||||||    
T  2135423 tcaaac 2135428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 865 - 972
Target Start/End: Complemental strand, 45656269 - 45656164
Alignment:
Q  865 tatttaaattttt-aaaagataaatacaatgtgccgtcgtatatatgttatacacccaaatgtgaaaatcactaccgtaaacacgatgaacctcaaacca 963  Q
    ||||||||||||| ||||||||||| ||| |||   || ||||||||  ||| | ||||||||||||||||| | |||| ||| || |||||||||||||    
T  45656269 tatttaaattttttaaaagataaatgcaaggtg---tcatatatatgcgataaatccaaatgtgaaaatcacgaacgtatacatgacgaacctcaaacca 45656173  T
Q  964 ccatcccaa 972  Q
    || ||||||    
T  45656172 ccctcccaa 45656164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 850 - 955
Target Start/End: Complemental strand, 10979009 - 10978906
Alignment:
Q  850 aaaagaccaatattctatttaaattttt-aaaagataaatacaatgtgccgtcgtatatatgttatacacccaaatgtgaaaatcactaccgtaaacacg 948  Q
    |||||| |||| ||||||||| |||||| ||||||||||||||| |||   |||||||||||   |||||||| | |||||||| ||||||||| ||| |    
T  10979009 aaaagagcaatgttctatttatattttttaaaagataaatacaaggtg---tcgtatatatgcggtacacccagaagtgaaaatgactaccgtatacatg 10978913  T
Q  949 atgaacc 955  Q
    | |||||    
T  10978912 aggaacc 10978906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 850 - 955
Target Start/End: Original strand, 43455529 - 43455632
Alignment:
Q  850 aaaagaccaatattctatttaaatttt-taaaagataaatacaatgtgccgtcgtatatatgttatacacccaaatgtgaaaatcactaccgtaaacacg 948  Q
    |||||| |||| ||||||||| ||||| ||||||||||||| || ||||   ||||||||||   |||||||||| |||||||| ||||||||| ||| |    
T  43455529 aaaagagcaatgttctatttatattttttaaaagataaatataaggtgc---cgtatatatgcggtacacccaaaggtgaaaatgactaccgtatacatg 43455625  T
Q  949 atgaacc 955  Q
    | |||||    
T  43455626 aggaacc 43455632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 850 - 900
Target Start/End: Complemental strand, 17679509 - 17679458
Alignment:
Q  850 aaaagaccaatattctatttaaattttt-aaaagataaatacaatgtgccgt 900  Q
    |||||| |||||||||||||| |||||| ||||||||||||||| |||||||    
T  17679509 aaaagagcaatattctatttatattttttaaaagataaatacaaggtgccgt 17679458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 850 - 942
Target Start/End: Complemental strand, 32128693 - 32128603
Alignment:
Q  850 aaaagaccaatattctatttaaattttt-aaaagataaatacaatgtgccgtcgtatatatgttatacacccaaatgtgaaaatcactaccgta 942  Q
    |||||| |||| ||||||||| |||||| |||||||||||| || |||   |||||||||||   |||||||||| |||||||| |||||||||    
T  32128693 aaaagagcaatgttctatttatattttttaaaagataaatataaggtg---tcgtatatatgcggtacacccaaaggtgaaaatgactaccgta 32128603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 851 - 956
Target Start/End: Original strand, 35779325 - 35779427
Alignment:
Q  851 aaagaccaatattctatttaaatttttaaaagataaatacaatgtgccgtcgtatatatgttatacacccaaatgtgaaaatcactaccgtaaacacgat 950  Q
    ||||| |||| |||||||  | |||||||||||||||||||| ||   ||||||||||||   |||||||||| |||||||| | ||||||| ||| ||     
T  35779325 aaagagcaatgttctattatattttttaaaagataaatacaaggt---gtcgtatatatgcggtacacccaaaggtgaaaatgattaccgtatacatgag 35779421  T
Q  951 gaacct 956  Q
    ||||||    
T  35779422 gaacct 35779427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 851 - 955
Target Start/End: Original strand, 38209590 - 38209692
Alignment:
Q  851 aaagaccaatattctatttaaatttt-taaaagataaatacaatgtgccgtcgtatatatgttatacacccaaatgtgaaaatcactaccgtaaacacga 949  Q
    ||||| |||| ||||||||| ||||| |||||||||||||||| ||||   ||||||||||   |||||||| | |||||||| ||||||||| ||| ||    
T  38209590 aaagagcaatgttctatttatattttttaaaagataaatacaaggtgc---cgtatatatgcggtacacccagaggtgaaaatgactaccgtatacatga 38209686  T
Q  950 tgaacc 955  Q
     |||||    
T  38209687 ggaacc 38209692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 850 - 942
Target Start/End: Complemental strand, 48209349 - 48209259
Alignment:
Q  850 aaaagaccaatattctatttaaattttt-aaaagataaatacaatgtgccgtcgtatatatgttatacacccaaatgtgaaaatcactaccgta 942  Q
    |||||| |||| ||||||||| |||||| ||||||||||||||| ||||   ||||||||||   |||||||| ||||||| || |||||||||    
T  48209349 aaaagagcaatgttctatttatattttttaaaagataaatacaaggtgc---cgtatatatgcggtacacccagatgtgaatatgactaccgta 48209259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 850 - 955
Target Start/End: Complemental strand, 16845131 - 16845027
Alignment:
Q  850 aaaagaccaatattctatttaaattttt--aaaagataaatacaatgtgccgtcgtatatatgttatacacccaaatgtgaaaatcactaccgtaaacac 947  Q
    |||||| |||| ||||||||| ||||||  |||||||||||| || |||   ||||||||||||  |||||||||  |||||||| ||||||||| |||     
T  16845131 aaaagagcaatgttctatttatatttttttaaaagataaatataaggtg---tcgtatatatgtagtacacccaacggtgaaaatgactaccgtatacat 16845035  T
Q  948 gatgaacc 955  Q
    || |||||    
T  16845034 gaggaacc 16845027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 859 - 957
Target Start/End: Original strand, 5128849 - 5128945
Alignment:
Q  859 atattctatttaaatttt-taaaagataaatacaatgtgccgtcgtatatatgttatacacccaaatgtgaaaatcactaccgtaaacacgatgaacctc 957  Q
    |||||||||||| ||||| |||||||||||||||| ||||   ||||||||||   | |||||| | |||||||| ||||||||| ||| || |||||||    
T  5128849 atattctatttatattttttaaaagataaatacaaggtgc---cgtatatatgcagtgcacccagaggtgaaaatgactaccgtatacatgaggaacctc 5128945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 804 - 841
Target Start/End: Original strand, 30507071 - 30507108
Alignment:
Q  804 tgtaagtgaaaagagatccgtaataaaataaaaatgta 841  Q
    |||||||||||||||| || ||||||||||||||||||    
T  30507071 tgtaagtgaaaagagacccataataaaataaaaatgta 30507108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 5e-28; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 862 - 979
Target Start/End: Complemental strand, 8420421 - 8420306
Alignment:
Q  862 ttctatttaaattttt-aaaagataaatacaatgtgccgtcgtatatatgttatacacccaaatgtgaaaatcactaccgtaaacacgatgaacctcaaa 960  Q
    |||||||||||||||| ||||||||||||||| |||||||   ||||||||| ||||||||||||||||||||||| ||||| | |||| ||||||||||    
T  8420421 ttctatttaaattttttaaaagataaatacaaggtgccgt---atatatgttgtacacccaaatgtgaaaatcactgccgtatatacgaggaacctcaaa 8420325  T
Q  961 ccaccatcccaataaaaca 979  Q
    ||||||| |||| ||||||    
T  8420324 ccaccattccaaaaaaaca 8420306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 804 - 979
Target Start/End: Complemental strand, 25855574 - 25855402
Alignment:
Q  804 tgtaagtgaaaagagatccgtaataaaataaaaatgtannnnnnnnaaaagaccaatattctatttaaattttt-aaaagataaatacaatgtgccgtcg 902  Q
    ||||| |||||| ||  |||||||||||||||||||||         ||||| |||| |||||||||||||||| ||||||||| ||||| |||   |||    
T  25855574 tgtaaatgaaaaaaggcccgtaataaaataaaaatgtatgtttttttaaagaacaatgttctatttaaattttttaaaagataa-tacaaggtg---tcg 25855479  T
Q  903 tatatatgttatacacccaaatgtgaaaatcactaccgtaaacacgatgaacctcaaaccaccatcccaataaaaca 979  Q
    |||||||||  | ||||||||  ||||||||||||||||| |||||| ||||||||||||||| |||||| ||||||    
T  25855478 tatatatgtagtgcacccaaagttgaaaatcactaccgtatacacgaagaacctcaaaccaccctcccaaaaaaaca 25855402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 804 - 977
Target Start/End: Complemental strand, 49393242 - 49393073
Alignment:
Q  804 tgtaagtgaaaagagatccgtaataaaataaaaatgtannnnnnnnaaaagaccaatattctatttaaattttt-aaaagataaatacaatgtgccgtcg 902  Q
    |||||||||||| |||  ||||||||||||||||||||         ||||| |||| |||| ||||||||||| |||||||||||||||   | |||||    
T  49393242 tgtaagtgaaaaaagactcgtaataaaataaaaatgtatttttttttaaagaacaatgttctctttaaattttttaaaagataaatacaa---ggcgtcg 49393146  T
Q  903 tatatatgttatacacccaaatgtgaaaatcactaccgtaaacacgatgaacctcaaaccaccatcccaataaaa 977  Q
    |||||||| | |||||||||| || ||||| ||||||||| ||| || |||||||||| ||||||||||| ||||    
T  49393145 tatatatg-tgtacacccaaaggtaaaaattactaccgtatacatga-gaacctcaaatcaccatcccaaaaaaa 49393073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 776 - 979
Target Start/End: Complemental strand, 26279722 - 26279520
Alignment:
Q  776 cgttcctaagaatctagagattcagctctgtaagtgaaaagagatccgtaataaaataaaaatgtannnnnnnnaaaagaccaatattctatttaaattt 875  Q
    |||||||| |||| | ||| |||| || ||||||||||||||| ||| || ||||||||||| |||        |||||| |||| ||||||||||||||    
T  26279722 cgttcctatgaatttggaggttcaactttgtaagtgaaaagaggtccatagtaaaataaaaacgtattttttt-aaaagaacaatgttctatttaaattt 26279624  T
Q  876 tt-aaaagataaatacaatgtgccgtcgtatatatgttatacacccaaatgtgaaaatcactaccg--taaacacgatgaacctcaaaccaccatcccaa 972  Q
    || |||||||||||| || |||   |||||||||||  |||||||||||  |||||||||||||    || ||| || ||||||||||||||| ||||||    
T  26279623 tttaaaagataaatagaaggtg---tcgtatatatgcaatacacccaaagatgaaaatcactacacattatacatgaggaacctcaaaccaccctcccaa 26279527  T
Q  973 taaaaca 979  Q
     ||||||    
T  26279526 aaaaaca 26279520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 851 - 979
Target Start/End: Complemental strand, 790042 - 789916
Alignment:
Q  851 aaagaccaatattctatttaaatttttaaaaga-taaatacaatgtgccgtcgtatatatgttatacacccaaatgtgaaaatcactaccgtaaacacga 949  Q
    ||||| |||| |||||||||||||||| ||| | ||||||||| |||   || |||||||||| |||||||||| || |||||||| ||| || ||| ||    
T  790042 aaagaacaatcttctatttaaattttttaaacaataaatacaaggtg---tcatatatatgttgtacacccaaaggtaaaaatcaccaccatatacatga 789946  T
Q  950 tgaacctcaaaccaccatcccaataaaaca 979  Q
     |||||||||||||||| ||||| ||||||    
T  789945 ggaacctcaaaccaccaacccaaaaaaaca 789916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 850 - 979
Target Start/End: Original strand, 54574826 - 54574953
Alignment:
Q  850 aaaagaccaatattctatttaaattttt-aaaagataaatacaatgtgccgtcgtatatatgttatacacccaaatgtgaaaatcactaccgtaaacacg 948  Q
    |||||| |||| |||||||||||||||| |||| |||||||||| || ||||   |||||||   |||||||||| || |||||||||||| || ||| |    
T  54574826 aaaagaacaatgttctatttaaatttttcaaaatataaatacaaggtaccgt---atatatgcggtacacccaaaagtaaaaatcactaccatatacatg 54574922  T
Q  949 atgaacctcaaaccaccatcccaataaaaca 979  Q
    | |||||||||||| || |||||| ||||||    
T  54574923 aggaacctcaaaccgccctcccaaaaaaaca 54574953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 797 - 961
Target Start/End: Original strand, 32319103 - 32319263
Alignment:
Q  797 tcagctctgtaagtgaaaagagatccgtaataaaataaaaatgtannnnnnnnaaaagaccaatattctatttaaatttt-taaaagataaatacaatgt 895  Q
    |||| |||||||||||||| || || |||||||||||||||||||         |||||  ||| ||||||||||||||| |||||||||||||||| ||    
T  32319103 tcagttctgtaagtgaaaataggtctgtaataaaataaaaatgtaagttttt--aaagaataatgttctatttaaattttttaaaagataaatacaaagt 32319200  T
Q  896 gccgtcgtatatatgttatacacccaaatgtgaaaatcactaccgtaaacacgatgaacctcaaac 961  Q
       || |||||||||   |||||||||| |||||||| |||| | || | |||| |||||||||||    
T  32319201 ---gttgtatatatgcggtacacccaaaggtgaaaattactatcttatatacgaggaacctcaaac 32319263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 804 - 965
Target Start/End: Complemental strand, 52374810 - 52374650
Alignment:
Q  804 tgtaagtgaaaagagatccgtaataaaataaaaatgta-nnnnnnnnaaaagaccaatattctatttaaa-tttttaaaagataaatacaatgtgccgtc 901  Q
    |||||||||||||| ||||||||||||||||||| |||         |||||| |||| ||||||||||| |||||   | |||||||||||||   |||    
T  52374810 tgtaagtgaaaagaaatccgtaataaaataaaaacgtatttttttttaaaagaacaatgttctatttaaatttttttttaaataaatacaatgt---gtc 52374714  T
Q  902 gtatatatgttatacacccaaatgtgaaaatcactaccgtaaacacgatgaacctcaaaccacc 965  Q
    ||||| |||  ||||| | ||| | |||||||||||||||| ||| || |||||||| ||||||    
T  52374713 gtatagatgcgatacatctaaaggagaaaatcactaccgtatacatgaagaacctcataccacc 52374650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 873 - 955
Target Start/End: Original strand, 8073361 - 8073440
Alignment:
Q  873 tttttaaaagataaatacaatgtgccgtcgtatatatgttatacacccaaatgtgaaaatcactaccgtaaacacgatgaacc 955  Q
    |||||||||||||||||||| |||   |||||||||||   |||||||||| |||||||| ||||||||| ||| || |||||    
T  8073361 tttttaaaagataaatacaaggtg---tcgtatatatgcggtacacccaaaagtgaaaatgactaccgtatacatgaggaacc 8073440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 873 - 955
Target Start/End: Complemental strand, 47467767 - 47467688
Alignment:
Q  873 tttttaaaagataaatacaatgtgccgtcgtatatatgttatacacccaaatgtgaaaatcactaccgtaaacacgatgaacc 955  Q
    |||||||||||||||||||| ||||   ||||||||||  ||||||||| | |||||||| ||||||||| ||| || |||||    
T  47467767 tttttaaaagataaatacaaggtgc---cgtatatatgcgatacacccagaggtgaaaatgactaccgtatacatgaggaacc 47467688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 850 - 955
Target Start/End: Original strand, 54619202 - 54619305
Alignment:
Q  850 aaaagaccaatattctatttaaatttt-taaaagataaatacaatgtgccgtcgtatatatgttatacacccaaatgtgaaaatcactaccgtaaacacg 948  Q
    |||||| |||| ||||||||| ||||| |||||||||||||||| ||||   ||||||||||   |||||||| | |||||||| ||||||||| ||| |    
T  54619202 aaaagagcaatgttctatttatattttttaaaagataaatacaaggtgc---cgtatatatgcggtacacccagaggtgaaaatgactaccgtatacatg 54619298  T
Q  949 atgaacc 955  Q
    | |||||    
T  54619299 aggaacc 54619305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 862 - 972
Target Start/End: Original strand, 28689372 - 28689480
Alignment:
Q  862 ttctatttaaatttttaaaa-gataaatacaatgtgccgtcgtatatatgttatacacccaaatgtgaaaatcactaccgtaaacacgatgaacctcaaa 960  Q
    ||||||||||||||| |||| ||||||||||| |||||||   |||||||  ||| | ||||| |||||||||||| ||||| ||| ||  || ||||||    
T  28689372 ttctatttaaattttcaaaaagataaatacaaggtgccgt---atatatgcgatatatccaaaggtgaaaatcactgccgtatacatgagaaatctcaaa 28689468  T
Q  961 ccaccatcccaa 972  Q
    | ||| ||||||    
T  28689469 ctaccctcccaa 28689480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1320 (Bit Score: 64; Significance: 2e-27; HSPs: 1)
Name: scaffold1320
Description:

Target: scaffold1320; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 800 - 964
Target Start/End: Complemental strand, 1508 - 1346
Alignment:
Q  800 gctctgtaagtgaaaagagatccgtaataaaataaaaatgtannnnnnnnaaaagaccaatattctatttaaa-tttttaaaagataaatacaatgtgcc 898  Q
    ||||||||||||||||||  |||||||||||||||||| |||        ||||||  ||| ||||||||||| ||||||||||||||||| || ||||     
T  1508 gctctgtaagtgaaaagaagtccgtaataaaataaaaacgtattttttttaaaagaataatgttctatttaaaatttttaaaagataaatataaggtgct 1409  T
Q  899 gtcgtatatatgttatacacccaaatgtgaaaatcactaccgtaaacacgatgaacctcaaaccac 964  Q
    ||   ||||||| |||||||||||||||||||||||||| |||| ||| || ||||||||||||||    
T  1408 gt---atatatgctatacacccaaatgtgaaaatcactatcgtatacatgaggaacctcaaaccac 1346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 4e-25; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 776 - 980
Target Start/End: Complemental strand, 10407639 - 10407437
Alignment:
Q  776 cgttcctaagaatctagagattcagctctgtaagtgaaaagagatccgtaataaaataaaaatgtannnnnnnnaaaagaccaatattctatttaaattt 875  Q
    |||||||| |||||||||| ||| | ||| ||||||||||||| ||| |||||||||||||| |||        |||||| |||| ||||||||||||||    
T  10407639 cgttcctacgaatctagaggttcggttctataagtgaaaagaggtccataataaaataaaaaagtattttttttaaaagaacaatgttctatttaaattt 10407540  T
Q  876 tt-aaaagataaatacaatgtgccgtcgtatatatgttatacacccaaatgtgaaaatcactaccgtaaacacgatgaacctcaaaccaccatcccaata 974  Q
    || |||||||||| |||| |||   ||||| ||||||| |||| | ||| |||||||| |||||||||  || || ||| ||| |||||||||||||| |    
T  10407539 tttaaaagataaacacaaggtg---tcgtacatatgttgtacatctaaaagtgaaaattactaccgtatgcatgaggaatctccaaccaccatcccaaaa 10407443  T
Q  975 aaacat 980  Q
    ||||||    
T  10407442 aaacat 10407437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 850 - 982
Target Start/End: Original strand, 36868872 - 36869002
Alignment:
Q  850 aaaagaccaatattctatttaaattttt-aaaagataaatacaatgtgccgtcgtatatatgttatacacccaaatgtgaaaatcactaccgtaaacacg 948  Q
    |||||| |||| |||||||||| ||||| ||||||||||||||| |||   ||||||||||||  ||||||||||||||||||||||||||||| ||| |    
T  36868872 aaaagaacaatgttctatttaatttttttaaaagataaatacaaggtg---tcgtatatatgtggtacacccaaatgtgaaaatcactaccgtatacatg 36868968  T
Q  949 atgaacctcaaaccaccatcccaataaaacatcc 982  Q
    | ||| ||||||||||| |||| | |||||||||    
T  36868969 aggaatctcaaaccaccctccccaaaaaacatcc 36869002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 802 - 979
Target Start/End: Complemental strand, 34426055 - 34425880
Alignment:
Q  802 tctgtaagtgaaaagagatccgtaataaaataaaaatgtannnnnnnnaaaagaccaatattctatttaaattttt-aaaagataaatacaatgtgccgt 900  Q
    |||||||||||||| |||   |||||||||||||||||||        |||||| |||| |||||||| ||||||| ||||||||||||||| |||||||    
T  34426055 tctgtaagtgaaaaaagacatgtaataaaataaaaatgtatcttttttaaaagaacaatgttctatttcaattttttaaaagataaatacaaggtgccgt 34425956  T
Q  901 cgtatatatgttatacacccaaatgtgaaaatcactaccgtaaacacgatgaacctcaaaccaccatcccaataaaaca 979  Q
       |||||||| ||||||| |||  | ||||||| ||||||| ||| || ||||||||||||||| |||||| ||||||    
T  34425955 ---atatatgtgatacacctaaagattaaaatcattaccgtatacatgaggaacctcaaaccaccctcccaaaaaaaca 34425880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 802 - 982
Target Start/End: Original strand, 1366474 - 1366652
Alignment:
Q  802 tctgtaagtgaaaagagatccgtaataaaataaaaatgtannnnnnnnaaaagaccaatattctatttaaatttttaa-aagataaatacaatgtgccgt 900  Q
    ||||||||| ||||||| ||||||| |||||||||| |||        |||||| |||| |||||||||||||||| | |||||||||||||  ||   |    
T  1366474 tctgtaagtaaaaagaggtccgtaaaaaaataaaaacgtattttttttaaaagaacaatgttctatttaaattttttataagataaatacaagatg---t 1366570  T
Q  901 cgtatatatgttatacacccaaatgtgaaaatcactaccgtaaacacgatgaacctcaaaccaccatcccaataaaacatcc 982  Q
     |||||||||  ||||||| |||||||||||||||||||||| | | || |||||||| |||||| |||||| |||||||||    
T  1366571 ggtatatatgcgatacacctaaatgtgaaaatcactaccgtatatatgaggaacctcataccaccctcccaaaaaaacatcc 1366652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 851 - 965
Target Start/End: Original strand, 14318382 - 14318494
Alignment:
Q  851 aaagaccaatattctatttaaattttt-aaaagataaatacaatgtgccgtcgtatatatgttatacacccaaatgtgaaaatcactaccgtaaacacga 949  Q
    ||||| |||| |||||||||||||||| ||||||||||||||| |||   |||||||||||| ||||| |||||  ||||||||||||||||| ||| ||    
T  14318382 aaagaacaatgttctatttaaattttttaaaagataaatacaaggtg---tcgtatatatgtgatacatccaaaaatgaaaatcactaccgtatacatga 14318478  T
Q  950 tgaacctcaaaccacc 965  Q
     |||||||||||||||    
T  14318479 ggaacctcaaaccacc 14318494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 850 - 979
Target Start/End: Original strand, 2024638 - 2024765
Alignment:
Q  850 aaaagaccaatattctatttaaattttta-aaagataaatacaatgtgccgtcgtatatatgttatacacccaaatgtgaaaatcactaccgtaaacacg 948  Q
    |||||| |||| ||||||||||||||||  ||||||||||||||||||||||   |||||||| |||||||||||  |||||||||||||| || ||| |    
T  2024638 aaaagaacaatgttctatttaaatttttttaaagataaatacaatgtgccgt---atatatgtgatacacccaaagatgaaaatcactaccatatacatg 2024734  T
Q  949 atgaacctcaaaccaccatcccaataaaaca 979  Q
    | || |||||||||| | |||||| ||||||    
T  2024735 aggatcctcaaaccatcctcccaaaaaaaca 2024765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 800 - 965
Target Start/End: Original strand, 2530844 - 2531006
Alignment:
Q  800 gctctgtaagtgaaaagagatccgtaataaaataaaaatgtannnnnnnnaaaagaccaatattctatttaaattttt-aaaagataaatacaatgtgcc 898  Q
    |||||||||||||||||||  |||||||||||||||||||||        ||||||  ||| |||||||||| ||||| |||||||||||||||||||      
T  2530844 gctctgtaagtgaaaagaggcccgtaataaaataaaaatgtatttttcttaaaagaa-aatgttctatttaagttttttaaaagataaatacaatgtg-- 2530940  T
Q  899 gtcgtatatatgttatacacccaaatgtgaaaatcactaccgtaaacacgatgaacctcaaaccacc 965  Q
     ||||||||||    |||| ||||| |||||||||||||| ||| ||| || |||||||||||||||    
T  2530941 -tcgtatatatacggtacatccaaaggtgaaaatcactactgtatacatgaggaacctcaaaccacc 2531006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 800 - 979
Target Start/End: Original strand, 11242265 - 11242441
Alignment:
Q  800 gctctgtaagtgaaaagagatccgtaataaaataaaaatgtannnnnnnnaaaagaccaatattctatttaaattttt-aaaagataaatacaatgtgcc 898  Q
    ||||||||||||||||||||  |||||||||||||||| |||        |||||| |||| |||||||||| ||||| |||||||||||||||  ||      
T  11242265 gctctgtaagtgaaaagagactcgtaataaaataaaaacgtattctttt-aaaagaacaatgttctatttaatttttttaaaagataaatacaaaatgat 11242363  T
Q  899 gtcgtatatatgttatacacccaaatgtgaaaatcactaccgtaaacacgatgaacctcaaaccaccatcccaataaaaca 979  Q
    ||   |||||||| ||||| |||||  || |||||||||||||| ||| || ||||||||||||||| |||||| ||||||    
T  11242364 gt---atatatgtgatacaaccaaagatggaaatcactaccgtatacatgaggaacctcaaaccaccctcccaaaaaaaca 11242441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 802 - 940
Target Start/End: Original strand, 26718897 - 26719033
Alignment:
Q  802 tctgtaagtgaaaagagatccgtaataaaataaaaatgtannnnnnnnaaaagaccaatattctatttaaa-tttttaaaagataaatacaatgtgccgt 900  Q
    |||||||||||||||||| ||||||||||||||||| |||         |||||  ||| ||||||||||| |||||||||||||||||||| |||   |    
T  26718897 tctgtaagtgaaaagagacccgtaataaaataaaaacgtatttttttttaaagaataatgttctatttaaaatttttaaaagataaatacaaagtg---t 26718993  T
Q  901 cgtatatatgttatacacccaaatgtgaaaatcactaccg 940  Q
    ||||||||||  |||||| |||| ||||||||||||||||    
T  26718994 cgtatatatgcgatacactcaaaggtgaaaatcactaccg 26719033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 802 - 940
Target Start/End: Original strand, 26988641 - 26988777
Alignment:
Q  802 tctgtaagtgaaaagagatccgtaataaaataaaaatgtannnnnnnnaaaagaccaatattctatttaaa-tttttaaaagataaatacaatgtgccgt 900  Q
    |||||||||||||||||| ||||||||||||||||| |||         |||||  ||| ||||||||||| |||||||||||||||||||| |||   |    
T  26988641 tctgtaagtgaaaagagacccgtaataaaataaaaacgtatttttttttaaagaataatgttctatttaaaatttttaaaagataaatacaaagtg---t 26988737  T
Q  901 cgtatatatgttatacacccaaatgtgaaaatcactaccg 940  Q
    ||||||||||  |||||| |||| ||||||||||||||||    
T  26988738 cgtatatatgcgatacactcaaaggtgaaaatcactaccg 26988777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 851 - 970
Target Start/End: Complemental strand, 2412191 - 2412074
Alignment:
Q  851 aaagaccaatattctatttaaattttt-aaaagataaatacaatgtgccgtcgtatatatgttatacacccaaatgtgaaaatcactaccgtaaacacga 949  Q
    ||||| |||| |||||||||||||||| |||| |||||||||| |||   |||||||||||  || || |||||||||||||||||||| ||| ||| ||    
T  2412191 aaagaacaatgttctatttaaattttttaaaaaataaatacaaagtg---tcgtatatatgcgatgcatccaaatgtgaaaatcactactgtatacatga 2412095  T
Q  950 tgaacctcaaaccaccatccc 970  Q
     ||||||||||||||| ||||    
T  2412094 ggaacctcaaaccaccctccc 2412074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 850 - 969
Target Start/End: Complemental strand, 33037884 - 33037767
Alignment:
Q  850 aaaagaccaatattctatttaaattttt-aaaagataaatacaatgtgccgtcgtatatatgttatacacccaaatgtgaaaatcactaccgtaaacacg 948  Q
    |||||| |||| || ||||||||||||| |||||||||||||||  |    ||||||||||||| |||||||||| ||||||| || ||||||| ||| |    
T  33037884 aaaagaacaatgttttatttaaattttttaaaagataaatacaagata---tcgtatatatgttgtacacccaaaggtgaaaaccattaccgtatacatg 33037788  T
Q  949 atgaacctcaaaccaccatcc 969  Q
    | |||||||||||||||||||    
T  33037787 aggaacctcaaaccaccatcc 33037767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 850 - 955
Target Start/End: Original strand, 28822338 - 28822441
Alignment:
Q  850 aaaagaccaatattctatttaaatttt-taaaagataaatacaatgtgccgtcgtatatatgttatacacccaaatgtgaaaatcactaccgtaaacacg 948  Q
    |||||| |||| ||||||||| ||||| ||||||||||||| || ||||   ||||||||||   |||||||||| |||||||| ||||||||| ||| |    
T  28822338 aaaagagcaatgttctatttatattttttaaaagataaatataaggtgc---cgtatatatgcggtacacccaaaggtgaaaatgactaccgtatacatg 28822434  T
Q  949 atgaacc 955  Q
    |||||||    
T  28822435 atgaacc 28822441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 806 - 841
Target Start/End: Complemental strand, 10543820 - 10543785
Alignment:
Q  806 taagtgaaaagagatccgtaataaaataaaaatgta 841  Q
    ||||||||||||||||||||||||||||||||||||    
T  10543820 taagtgaaaagagatccgtaataaaataaaaatgta 10543785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 776 - 838
Target Start/End: Original strand, 35080694 - 35080756
Alignment:
Q  776 cgttcctaagaatctagagattcagctctgtaagtgaaaagagatccgtaataaaataaaaat 838  Q
    |||||||| ||||||||||  ||  ||||||||||||||||||  ||||||||||||||||||    
T  35080694 cgttcctacgaatctagaggctcgactctgtaagtgaaaagagggccgtaataaaataaaaat 35080756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 850 - 965
Target Start/End: Original strand, 40794323 - 40794436
Alignment:
Q  850 aaaagaccaatattctatttaaattttt-aaaagataaatacaatgtgccgtcgtatatatgttatacacccaaatgtgaaaatcactaccgtaaacacg 948  Q
    |||||| |||| || ||||||||||||| |||||| |||||||| | |||||   | |||| | ||||||| ||| |||||||||||||||||| ||| |    
T  40794323 aaaagaacaatgttttatttaaattttttaaaagacaaatacaaagagccgt---aaatatatgatacaccaaaaggtgaaaatcactaccgtatacatg 40794419  T
Q  949 atgaacctcaaaccacc 965  Q
    |  ||||||||||||||    
T  40794420 agaaacctcaaaccacc 40794436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 857 - 955
Target Start/End: Original strand, 16198797 - 16198893
Alignment:
Q  857 caatattctatttaaattttt-aaaagataaatacaatgtgccgtcgtatatatgttatacacccaaatgtgaaaatcactaccgtaaacacgatgaacc 955  Q
    |||| ||||||||| |||||| |||||||||||| || |||   |||||||||||  ||||||||||| |||||||| ||||||||| ||| || |||||    
T  16198797 caatgttctatttatattttttaaaagataaatataaggtg---tcgtatatatgcgatacacccaaaggtgaaaatgactaccgtatacatgaggaacc 16198893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 852 - 938
Target Start/End: Original strand, 22648734 - 22648818
Alignment:
Q  852 aagaccaatattctatttaaatttt-taaaagataaatacaatgtgccgtcgtatatatgttatacacccaaatgtgaaaatcactac 938  Q
    |||| |||| ||||||||||||||| |||||||||||||||||||   |||||||||||||   ||| ||||| |||| |||||||||    
T  22648734 aagaacaatgttctatttaaattttttaaaagataaatacaatgt---gtcgtatatatgtggcacatccaaaggtgacaatcactac 22648818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 850 - 955
Target Start/End: Original strand, 34756362 - 34756465
Alignment:
Q  850 aaaagaccaatattctatttaaatttt-taaaagataaatacaatgtgccgtcgtatatatgttatacacccaaatgtgaaaatcactaccgtaaacacg 948  Q
    |||||| |||| ||||||||| ||||| |||||||||||||||| ||||   ||||||||||   |||||||| | |||||||| ||||||||| ||| |    
T  34756362 aaaagagcaatgttctatttatattttttaaaagataaatacaaggtgc---cgtatatatgcggtacacccagaggtgaaaatgactaccgtatacatg 34756458  T
Q  949 atgaacc 955  Q
    | |||||    
T  34756459 aggaacc 34756465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 850 - 942
Target Start/End: Original strand, 38869359 - 38869449
Alignment:
Q  850 aaaagaccaatattctatttaaattttt-aaaagataaatacaatgtgccgtcgtatatatgttatacacccaaatgtgaaaatcactaccgta 942  Q
    |||||| |||| ||||||||| |||||| |||||||||||| || |||   |||||||||||   |||||||||| |||||||| |||||||||    
T  38869359 aaaagagcaatgttctatttatattttttaaaagataaatataaggtg---tcgtatatatgcggtacacccaaaggtgaaaatgactaccgta 38869449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 800 - 834
Target Start/End: Complemental strand, 2412238 - 2412204
Alignment:
Q  800 gctctgtaagtgaaaagagatccgtaataaaataa 834  Q
    ||||||||||||||||||| |||||||||||||||    
T  2412238 gctctgtaagtgaaaagaggtccgtaataaaataa 2412204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 857 - 955
Target Start/End: Complemental strand, 9364388 - 9364292
Alignment:
Q  857 caatattctatttaaattttt-aaaagataaatacaatgtgccgtcgtatatatgttatacacccaaatgtgaaaatcactaccgtaaacacgatgaacc 955  Q
    |||| ||||||||| |||||| |||||||||||| || ||||   ||||||||||   |||||||||| |||||||| ||||||||| ||| || |||||    
T  9364388 caatgttctatttatattttttaaaagataaatataaggtgc---cgtatatatgcggtacacccaaaggtgaaaatgactaccgtatacatgaggaacc 9364292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 53; Significance: 7e-21; HSPs: 2)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 785 - 977
Target Start/End: Complemental strand, 40257 - 40064
Alignment:
Q  785 gaatctagagattcagctctgtaagtgaaaagagatccgtaataaaataaaaatgtannnnnnnnaaaa-gaccaatattctatttaaattttt---aaa 880  Q
    |||||| ||| ||| ||||||||||||||||||| | ||||||||||||||||||||        |||| || |||| |||||||||| |||||   |||    
T  40257 gaatctggaggttctgctctgtaagtgaaaagaggttcgtaataaaataaaaatgtattttttttaaaaagaacaatgttctatttaatttttttttaaa 40158  T
Q  881 agataaatacaatgtgccgtcgtatatatgttatacacccaaatgtgaaaatcactaccgtaaacacgatgaacctcaaaccaccatcccaataaaa 977  Q
    |||||||||||| |||||||   || |||||| ||||||| || ||||||||||| | |||| ||| ||  |||||||||||||| |||||| ||||    
T  40157 agataaatacaaggtgccgt---atttatgttgtacaccctaaggtgaaaatcacaatcgtatacatgagcaacctcaaaccaccgtcccaaaaaaa 40064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022; HSP #2
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 785 - 977
Target Start/End: Complemental strand, 138317 - 138124
Alignment:
Q  785 gaatctagagattcagctctgtaagtgaaaagagatccgtaataaaataaaaatgtannnnnnnnaaaa-gaccaatattctatttaaattttt---aaa 880  Q
    |||||| ||| ||| ||||||||||||||||||| | ||||||||||||||||||||        |||| || |||| |||||||||| |||||   |||    
T  138317 gaatctggaggttctgctctgtaagtgaaaagaggttcgtaataaaataaaaatgtattttttttaaaaagaacaatgttctatttaatttttttttaaa 138218  T
Q  881 agataaatacaatgtgccgtcgtatatatgttatacacccaaatgtgaaaatcactaccgtaaacacgatgaacctcaaaccaccatcccaataaaa 977  Q
    |||||||||||| |||||||   || |||||| ||||||| || ||||||||||| | |||| ||| ||  |||||||||||||| |||||| ||||    
T  138217 agataaatacaaggtgccgt---atttatgttgtacaccctaaggtgaaaatcacaatcgtatacatgagcaacctcaaaccaccgtcccaaaaaaa 138124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 53; Significance: 7e-21; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 800 - 961
Target Start/End: Original strand, 206438 - 206597
Alignment:
Q  800 gctctgtaagtgaaaagagatccgtaataaaataaaaatgtannnnnnnnaaaagaccaatattctatttaaatttt-taaaagataaatacaatgtgcc 898  Q
    ||||||||||||||||||| |  |||||||||||||||||||         |||||  ||| ||||||||||||||| |||||||||||||||| |||      
T  206438 gctctgtaagtgaaaagaggtttgtaataaaataaaaatgtatttttttttaaagaagaatgttctatttaaattttgtaaaagataaatacaaggtg-- 206535  T
Q  899 gtcgtatatatgttatacacccaaatgtgaaaatcactaccgtaaacacgatgaacctcaaac 961  Q
     |||||||||||   |||||||||  |||||||||||||||||| ||| || |||||||||||    
T  206536 -tcgtatatatgcggtacacccaatggtgaaaatcactaccgtatacatgaggaacctcaaac 206597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 52; Significance: 3e-20; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 857 - 965
Target Start/End: Complemental strand, 39022 - 38916
Alignment:
Q  857 caatattctatttaaattttt-aaaagataaatacaatgtgccgtcgtatatatgttatacacccaaatgtgaaaatcactaccgtaaacacgatgaacc 955  Q
    |||| |||||||||||||||| ||||||||||||||| |||   |||||||||||  |||||| ||||||||||||||||||||||| | | || |||||    
T  39022 caatgttctatttaaattttttaaaagataaatacaaggtg---tcgtatatatgcgatacacacaaatgtgaaaatcactaccgtatatatgaggaacc 38926  T
Q  956 tcaaaccacc 965  Q
    ||||||||||    
T  38925 tcaaaccacc 38916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 3e-20; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 802 - 971
Target Start/End: Original strand, 2477536 - 2477702
Alignment:
Q  802 tctgtaagtgaaaagagatccgtaataaaataaaaatgtannnnnnnnaaaagaccaatattctatttaaatttt-taaaagataaatacaatgtgccgt 900  Q
    |||||||||||||||||| |||||||||||||| | ||||        ||| || |||| ||| ||||||||||| |||||||||||||||| ||   |     
T  2477536 tctgtaagtgaaaagagacccgtaataaaataagattgtattttttt-aaacgaacaatgttcaatttaaattttttaaaagataaatacaaggt---ga 2477631  T
Q  901 cgtatatatgttatacacccaaatgtgaaaatcactaccgtaaacacgatgaacctcaaaccaccatccca 971  Q
    | ||||||||  ||||||| |||||||||||||||||||||| ||| || ||||||||||||||| |||||    
T  2477632 catatatatgcgatacaccaaaatgtgaaaatcactaccgtatacatgaggaacctcaaaccaccctccca 2477702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 858 - 982
Target Start/End: Original strand, 21183682 - 21183804
Alignment:
Q  858 aatattctatttaaa-tttttaaaagataaatacaatgtgccgtcgtatatatgttatacacccaaatgtgaaaatcactaccgtaaacacgatgaacct 956  Q
    ||||||||||||||| |||||||||||||||||||| ||     |||||||||||  ||||||||||  ||||||||||||||||| ||| || ||||||    
T  21183682 aatattctatttaaattttttaaaagataaatacaaagt---agcgtatatatgtggtacacccaaagttgaaaatcactaccgtatacatgaggaacct 21183778  T
Q  957 caaaccaccatcccaataaaacatcc 982  Q
    |||||||||  ||||| |||||||||    
T  21183779 caaaccacccacccaaaaaaacatcc 21183804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 873 - 979
Target Start/End: Complemental strand, 20611873 - 20611770
Alignment:
Q  873 tttttaaaagataaatacaatgtgccgtcgtatatatgttatacacccaaatgtgaaaatcactaccgtaaacacgatgaacctcaaaccaccatcccaa 972  Q
    |||||||| ||||||||||| |||   ||||||||||   | ||| ||||| |||||||||||||||||| ||| || ||||||||||| ||| ||||||    
T  20611873 tttttaaacgataaatacaaggtg---tcgtatatatacgacacatccaaaggtgaaaatcactaccgtatacatgaggaacctcaaactaccctcccaa 20611777  T
Q  973 taaaaca 979  Q
     ||||||    
T  20611776 aaaaaca 20611770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 873 - 955
Target Start/End: Complemental strand, 33774200 - 33774121
Alignment:
Q  873 tttttaaaagataaatacaatgtgccgtcgtatatatgttatacacccaaatgtgaaaatcactaccgtaaacacgatgaacc 955  Q
    |||||||||||||||||||| |||||||   |||||||   ||||||||||||||||||| ||||||||| ||| || |||||    
T  33774200 tttttaaaagataaatacaaggtgccgt---atatatgcggtacacccaaatgtgaaaatgactaccgtatacatgaggaacc 33774121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 857 - 955
Target Start/End: Complemental strand, 17354054 - 17353958
Alignment:
Q  857 caatattctatttaaattttt-aaaagataaatacaatgtgccgtcgtatatatgttatacacccaaatgtgaaaatcactaccgtaaacacgatgaacc 955  Q
    |||| ||||||||| |||||| |||||||||||| || |||   |||||||||||   ||||||||||||||||||| |||| |||| ||| ||||||||    
T  17354054 caatgttctatttatattttttaaaagataaatataaggtg---tcgtatatatgcggtacacccaaatgtgaaaatgactatcgtatacatgatgaacc 17353958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 857 - 955
Target Start/End: Complemental strand, 28075883 - 28075787
Alignment:
Q  857 caatattctatttaaattttt-aaaagataaatacaatgtgccgtcgtatatatgttatacacccaaatgtgaaaatcactaccgtaaacacgatgaacc 955  Q
    |||| ||||||||| |||||| |||||||||||| || |||||||   |||||||  ||||||||||| |||||||| ||||||||| ||| || |||||    
T  28075883 caatgttctatttatattttttaaaagataaatataaggtgccgt---atatatgcgatacacccaaaggtgaaaatgactaccgtatacatgaggaacc 28075787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 850 - 955
Target Start/End: Original strand, 13727398 - 13727501
Alignment:
Q  850 aaaagaccaatattctatttaaatttt-taaaagataaatacaatgtgccgtcgtatatatgttatacacccaaatgtgaaaatcactaccgtaaacacg 948  Q
    |||||| |||| ||||||||| ||||| |||||||||||||||| ||||   ||||||||||   |||||||| | |||||||| ||||||||| ||| |    
T  13727398 aaaagagcaatgttctatttatattttttaaaagataaatacaaggtgc---cgtatatatgcggtacacccagaggtgaaaatgactaccgtatacatg 13727494  T
Q  949 atgaacc 955  Q
    | |||||    
T  13727495 aggaacc 13727501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 850 - 955
Target Start/End: Original strand, 20711719 - 20711822
Alignment:
Q  850 aaaagaccaatattctatttaaatttt-taaaagataaatacaatgtgccgtcgtatatatgttatacacccaaatgtgaaaatcactaccgtaaacacg 948  Q
    |||||| |||| ||||||||| ||||| ||||||||||||| || ||||   ||||||||||   |||||||||| |||||||| ||||||||| ||| |    
T  20711719 aaaagagcaatgttctatttatattttttaaaagataaatataaggtgc---cgtatatatgcggtacacccaaaggtgaaaatgactaccgtatacatg 20711815  T
Q  949 atgaacc 955  Q
    | |||||    
T  20711816 aggaacc 20711822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 850 - 955
Target Start/End: Complemental strand, 21479601 - 21479498
Alignment:
Q  850 aaaagaccaatattctatttaaattttt-aaaagataaatacaatgtgccgtcgtatatatgttatacacccaaatgtgaaaatcactaccgtaaacacg 948  Q
    |||||| |||| ||||||||| |||||| ||||||||||||||| ||||   ||||||||||   |||||||| | |||||||| ||||||||| ||| |    
T  21479601 aaaagagcaatgttctatttatattttttaaaagataaatacaaggtgc---cgtatatatgcggtacacccagaggtgaaaatgactaccgtatacatg 21479505  T
Q  949 atgaacc 955  Q
    | |||||    
T  21479504 aggaacc 21479498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 850 - 955
Target Start/End: Original strand, 27788687 - 27788790
Alignment:
Q  850 aaaagaccaatattctatttaaatttt-taaaagataaatacaatgtgccgtcgtatatatgttatacacccaaatgtgaaaatcactaccgtaaacacg 948  Q
    |||||| |||| ||||||||| ||||| ||||||||||||| || ||||   ||||||||||   |||||||||| |||||||| ||||||||| ||| |    
T  27788687 aaaagagcaattttctatttatattttttaaaagataaatataaggtgc---cgtatatatgcggtacacccaaaggtgaaaatgactaccgtatacatg 27788783  T
Q  949 atgaacc 955  Q
    | |||||    
T  27788784 aggaacc 27788790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 857 - 965
Target Start/End: Complemental strand, 6159538 - 6159432
Alignment:
Q  857 caatattctatttaaattttt-aaaagataaatacaatgtgccgtcgtatatatgttatacacccaaatgtgaaaatcactaccgtaaacacgatgaacc 955  Q
    |||| ||||||||| |||||| ||||||||||||||||||   ||||||||||||   ||||  |||| ||| |||||||||||||| | |  | |||||    
T  6159538 caatgttctatttatattttttaaaagataaatacaatgt---gtcgtatatatgcggtacattcaaaggtggaaatcactaccgtatatataaggaacc 6159442  T
Q  956 tcaaaccacc 965  Q
    ||||||||||    
T  6159441 tcaaaccacc 6159432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 872 - 979
Target Start/End: Complemental strand, 4037032 - 4036928
Alignment:
Q  872 atttttaaaagataaatacaatgtgccgtcgtatatatgttatacacccaaatgtgaaaatcactaccgtaaacacgatgaacctcaaaccaccatccca 971  Q
    |||||||| |||||||||||| |||||||   |||||| |  |||||||||| || || |||||||||||| | | || |||| |||||||||| ||| |    
T  4037032 atttttaagagataaatacaaggtgccgt---atatatatggtacacccaaaggtaaagatcactaccgtatatatgaggaacttcaaaccaccctccaa 4036936  T
Q  972 ataaaaca 979  Q
    | ||||||    
T  4036935 aaaaaaca 4036928  T

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Target: scaffold0182 (Bit Score: 47; Significance: 3e-17; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 851 - 982
Target Start/End: Original strand, 23993 - 24121
Alignment:
Q  851 aaagaccaatattctatttaaattttt-aaaagataaatacaatgtgccgtcgtatatatgttatacacccaaatgtgaaaatcactaccgtaaacacga 949  Q
    ||||| ||||||||||||||||||||| ||||||||||||||| |||   |||||||||||   |||||||||| |||||||||| |||||||  ||  |    
T  23993 aaagaacaatattctatttaaattttttaaaagataaatacaaggtg---tcgtatatatgcggtacacccaaaagtgaaaatcattaccgtatgcataa 24089  T
Q  950 tgaacctcaaaccaccatcccaataaaacatcc 982  Q
     ||| ||||||||||| |||||| |||||||||    
T  24090 ggaatctcaaaccaccctcccaa-aaaacatcc 24121  T

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Target: scaffold0018 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 857 - 963
Target Start/End: Original strand, 173516 - 173620
Alignment:
Q  857 caatattctatttaaattttt-aaaagataaatacaatgtgccgtcgtatatatgttatacacccaaatgtgaaaatcactaccgtaaacacgatgaacc 955  Q
    |||| |||||||||||||||| ||||||||||||||| || ||||   |||||||  ||||||||||| || ||||||||||||||| ||  || |||||    
T  173516 caatgttctatttaaattttttaaaagataaatacaaggtaccgt---atatatgcgatacacccaaaggtaaaaatcactaccgtatacgtgaggaacc 173612  T
Q  956 tcaaacca 963  Q
    ||||||||    
T  173613 tcaaacca 173620  T

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Target: scaffold0003 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 876 - 970
Target Start/End: Original strand, 351360 - 351451
Alignment:
Q  876 ttaaaagataaatacaatgtgccgtcgtatatatgttatacacccaaatgtgaaaatcactaccgtaaacacgatgaacctcaaaccaccatccc 970  Q
    ||||||||||||||||| |||   ||||||||||||| |||||||||| ||||||||| |||| | | |||||| | |||||||||||| |||||    
T  351360 ttaaaagataaatacaaggtg---tcgtatatatgttgtacacccaaaggtgaaaatcgctactgaatacacgaggtacctcaaaccacaatccc 351451  T

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Target: scaffold0007 (Bit Score: 39; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 802 - 972
Target Start/End: Original strand, 230812 - 230978
Alignment:
Q  802 tctgtaagtgaaaagagatccgtaataaaataaaaatgtannnnnnnnaaaagaccaatattctatttaaattt-ttaaaagataaatacaatgtgccgt 900  Q
    |||||||| ||||||||  |||||||||||  ||||||||        |||||| |||| |||||||||||||| |||||||||||||  || |||   |    
T  230812 tctgtaagggaaaagaggcccgtaataaaa--aaaatgtatattttttaaaagaacaatgttctatttaaatttgttaaaagataaatttaaggtg---t 230906  T
Q  901 cgtatatatgttatacacccaaatgtgaaaatcactaccgtaaacacgatgaacctcaaaccaccatcccaa 972  Q
     |||||||||  ||| ||||||| ||||||||||||||| || ||| || |||| |||||||||| ||||||    
T  230907 tgtatatatgcgatatacccaaaggtgaaaatcactaccttatacatgaggaacttcaaaccaccctcccaa 230978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 850 - 955
Target Start/End: Complemental strand, 106642 - 106539
Alignment:
Q  850 aaaagaccaatattctatttaaattttt-aaaagataaatacaatgtgccgtcgtatatatgttatacacccaaatgtgaaaatcactaccgtaaacacg 948  Q
    |||||| |||| ||||||||| |||||| |||||||||||| || |||   |||||||||||   |||||||||| |||||||| ||||||||| ||| |    
T  106642 aaaagaacaatgttctatttatattttttaaaagataaatataaggtg---tcgtatatatgcggtacacccaaaggtgaaaatgactaccgtatacatg 106546  T
Q  949 atgaacc 955  Q
    | |||||    
T  106545 aggaacc 106539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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