View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4618-Insertion-3 (Length: 861)

Name: NF4618-Insertion-3
Description: NF4618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4618-Insertion-3
NF4618-Insertion-3
[»] chr7 (22 HSPs)
chr7 (519-861)||(27324139-27324476)
chr7 (293-499)||(9942772-9942978)
chr7 (261-499)||(1031948-1032195)
chr7 (289-471)||(40871480-40871662)
chr7 (7-109)||(27324511-27324613)
chr7 (288-460)||(40858195-40858367)
chr7 (289-499)||(17194058-17194267)
chr7 (289-493)||(19323948-19324152)
chr7 (289-493)||(32575193-32575397)
chr7 (289-493)||(38141963-38142167)
chr7 (299-376)||(8123965-8124042)
chr7 (289-493)||(29626637-29626841)
chr7 (289-404)||(12623082-12623197)
chr7 (289-488)||(18299621-18299820)
chr7 (289-493)||(15669415-15669619)
chr7 (132-187)||(9942602-9942657)
chr7 (131-188)||(28782014-28782071)
chr7 (289-493)||(29126031-29126233)
chr7 (131-186)||(9948976-9949031)
chr7 (131-188)||(11621408-11621465)
chr7 (131-188)||(40871301-40871358)
chr7 (261-290)||(9948872-9948901)
[»] chr4 (23 HSPs)
chr4 (519-861)||(28358934-28359271)
chr4 (263-499)||(42718294-42718539)
chr4 (261-499)||(43499021-43499268)
chr4 (262-499)||(36651871-36652117)
chr4 (289-499)||(7743296-7743506)
chr4 (289-499)||(39059887-39060097)
chr4 (261-499)||(9896635-9896882)
chr4 (289-499)||(37870824-37871034)
chr4 (288-460)||(40850567-40850739)
chr4 (288-448)||(47590630-47590790)
chr4 (7-109)||(28359306-28359408)
chr4 (298-460)||(56024798-56024960)
chr4 (288-459)||(48640488-48640659)
chr4 (355-440)||(23106853-23106938)
chr4 (325-479)||(50771543-50771697)
chr4 (289-493)||(40345959-40346163)
chr4 (436-499)||(23108098-23108161)
chr4 (289-488)||(30598406-30598605)
chr4 (135-188)||(37870649-37870702)
chr4 (132-188)||(43499341-43499397)
chr4 (133-188)||(36651742-36651797)
chr4 (8-50)||(50344859-50344901)
chr4 (135-188)||(7743616-7743669)
[»] chr6 (9 HSPs)
chr6 (519-861)||(3500371-3500710)
chr6 (289-495)||(18972786-18972993)
chr6 (289-499)||(12912426-12912636)
chr6 (289-495)||(24393632-24393838)
chr6 (7-109)||(3500745-3500847)
chr6 (288-448)||(6029095-6029255)
chr6 (289-493)||(7093646-7093850)
chr6 (131-187)||(12912247-12912303)
chr6 (133-187)||(165556-165610)
[»] chr2 (16 HSPs)
chr2 (262-498)||(12410512-12410757)
chr2 (289-499)||(6764144-6764354)
chr2 (262-499)||(37647689-37647935)
chr2 (262-496)||(12422574-12422817)
chr2 (289-499)||(27271372-27271573)
chr2 (289-499)||(11031502-11031712)
chr2 (292-457)||(2380800-2380965)
chr2 (288-382)||(3044171-3044265)
chr2 (288-423)||(7901139-7901278)
chr2 (140-188)||(37648009-37648057)
chr2 (132-188)||(2702258-2702314)
chr2 (131-187)||(12410832-12410888)
chr2 (131-187)||(12422892-12422948)
chr2 (298-370)||(34394666-34394738)
chr2 (132-187)||(27271685-27271740)
chr2 (8-57)||(5609207-5609256)
[»] chr5 (10 HSPs)
chr5 (289-499)||(19021114-19021324)
chr5 (261-499)||(22639283-22639530)
chr5 (288-473)||(26369110-26369295)
chr5 (289-478)||(22580567-22580759)
chr5 (289-479)||(25982354-25982544)
chr5 (289-488)||(40973447-40973646)
chr5 (131-188)||(22639603-22639660)
chr5 (289-321)||(6536979-6537011)
chr5 (132-188)||(39143220-39143276)
chr5 (7-56)||(27771336-27771385)
[»] chr8 (12 HSPs)
chr8 (261-499)||(8444389-8444636)
chr8 (261-498)||(24503779-24504025)
chr8 (289-492)||(45540046-45540249)
chr8 (289-499)||(4034467-4034677)
chr8 (289-499)||(13089953-13090163)
chr8 (288-460)||(9932271-9932443)
chr8 (288-448)||(25582756-25582916)
chr8 (288-460)||(13781019-13781190)
chr8 (131-184)||(13089765-13089818)
chr8 (132-188)||(45547944-45548000)
chr8 (288-319)||(10230280-10230311)
chr8 (131-188)||(4034300-4034357)
[»] scaffold0300 (2 HSPs)
scaffold0300 (261-499)||(9301-9548)
scaffold0300 (131-187)||(9622-9678)
[»] chr1 (21 HSPs)
chr1 (262-499)||(4532217-4532463)
chr1 (290-499)||(33936151-33936360)
chr1 (289-493)||(31911724-31911928)
chr1 (289-499)||(34549075-34549285)
chr1 (289-499)||(19228065-19228274)
chr1 (288-460)||(20505398-20505570)
chr1 (264-398)||(51534610-51534753)
chr1 (288-448)||(26676664-26676824)
chr1 (288-460)||(33676671-33676843)
chr1 (288-438)||(28756653-28756803)
chr1 (289-473)||(27007563-27007747)
chr1 (288-460)||(46731822-46731994)
chr1 (299-493)||(15759681-15759875)
chr1 (289-367)||(52022615-52022693)
chr1 (131-188)||(4532086-4532143)
chr1 (132-188)||(33766400-33766456)
chr1 (131-188)||(34549407-34549464)
chr1 (131-188)||(45432373-45432430)
chr1 (132-188)||(51534478-51534534)
chr1 (131-188)||(19227886-19227943)
chr1 (140-188)||(33936477-33936525)
[»] scaffold0041 (2 HSPs)
scaffold0041 (289-471)||(94620-94802)
scaffold0041 (131-188)||(94924-94981)
[»] scaffold0074 (1 HSPs)
scaffold0074 (289-495)||(23515-23722)
[»] chr3 (4 HSPs)
chr3 (288-460)||(10436606-10436778)
chr3 (288-460)||(20406132-20406304)
chr3 (288-463)||(15029831-15030006)
chr3 (325-493)||(53459119-53459287)
[»] scaffold0432 (1 HSPs)
scaffold0432 (289-488)||(8829-9028)
[»] scaffold0037 (2 HSPs)
scaffold0037 (289-323)||(865-899)
scaffold0037 (140-187)||(1022-1069)


Alignment Details
Target: chr7 (Bit Score: 225; Significance: 1e-123; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-123
Query Start/End: Original strand, 519 - 861
Target Start/End: Complemental strand, 27324476 - 27324139
Alignment:
Q  519 taaaacaaaaacctcaaaatccacctgatacataattcctttgctgtctgcatctacaccatcttcacacaaccatggatgatgatttccaccaaccaac 618  Q
    |||||||| |||||||||||||||||||||||| ||||||||| || ||||||||||||  |||||||||| ||||||||||||||||||||||||||||    
T  27324476 taaaacaacaacctcaaaatccacctgatacatgattcctttgttgcctgcatctacactgtcttcacacacccatggatgatgatttccaccaaccaac 27324377  T
Q  619 caatatgaaccaccatggacgatgcaattgggaactatcaatgtgaaacc-tctcaaatgcaaacaccaaagcatataagtttttcttatttatttttcc 717  Q
     ||||||||||| |||||| |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |    
T  27324376 -aatatgaaccatcatggaggatgcaattgggaactatcagtgtgaaaccctctcaaatgcaaacaccaaagcatataagtttttcttatttattttttc 27324278  T
Q  718 cattgttgattttgttgtactttaaaatcgatcaaatcaagcaccaaagcaaatgcttcgtctaattaaatatctcttagttatttgcaattgaaaagca 817  Q
    |||||||||||||||| | |||||||||| |||||| |||||||||||||  ||||||||||||||||||| ||||    ||||||||||||||||| ||    
T  27324277 cattgttgattttgtttttctttaaaatcaatcaaagcaagcaccaaagc--atgcttcgtctaattaaatctctc----ttatttgcaattgaaaaaca 27324184  T
Q  818 ctattccc-tttattttgtttatttcacaaacttttgcttttgta 861  Q
    |||||||| ||||||||||||||||||||||||||||||||||||    
T  27324183 ctattcccttttattttgtttatttcacaaacttttgcttttgta 27324139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 293 - 499
Target Start/End: Original strand, 9942772 - 9942978
Alignment:
Q  293 accatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaacttc 392  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  9942772 accatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccaccagtatgattggagcttaactttatctaacaattgattaaaagaagcttc 9942871  T
Q  393 tttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaaagccg 492  Q
    ||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| ||| ||||||    
T  9942872 tttttggtgaaatatgcaagcatttctttcaagccagatcacccacacacaagatagtcaaataagattaagagttgagtgtttgctgtcagagaagccg 9942971  T
Q  493 ctaaagg 499  Q
    |||||||    
T  9942972 ctaaagg 9942978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 140; E-Value: 7e-73
Query Start/End: Original strand, 261 - 499
Target Start/End: Complemental strand, 1032195 - 1031948
Alignment:
Q  261 ctgttacataaatattcctaagcaaggtaa---------ccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgat 351  Q
    ||||||||||||||||||||||||||||||         ||||||||||| |||||||||||||||||||    |||||||||||||||| |||||||||    
T  1032195 ctgttacataaatattcctaagcaaggtaaatggttcaaccaccatgaatagtaggagaaaacaaaactattgtggttcgctttcagccaccagtatgat 1032096  T
Q  352 tggagcttaactttatctaacaattgattaaaagaaacttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagcc 451  Q
    || ||||||||||||||||| ||||||||||||||| ||||||||| ||||||||| ||||| || ||||||||  ||||||||||||||||| ||||||    
T  1032095 tgaagcttaactttatctaataattgattaaaagaagcttctttttggtgaaatattcgagcgttcctttcaagctagatcacccacacacaatatagcc 1031996  T
Q  452 aaataagattaagagttgagcgtttgctgttagaaaagccgctaaagg 499  Q
    |||||||||| ||||||||||||||| ||||||| |||||||||||||    
T  1031995 aaataagattcagagttgagcgtttgttgttagagaagccgctaaagg 1031948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 289 - 471
Target Start/End: Original strand, 40871480 - 40871662
Alignment:
Q  289 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaa 388  Q
    ||||||||||||||||||||||||||||||||||| || || || |||||||| ||||| ||||| ||||| |||||||||| ||||||||||||||||     
T  40871480 aaccaccatgaatggtaggagaaaacaaaactaggacgatttgccttcagccaccagtaagattgaagcttgactttatctagcaattgattaaaagaag 40871579  T
Q  389 cttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgag 471  Q
    ||||||||| |||||| || ||| |||| |||||||| || |||||||||||| | |||||||||||||| ||||||| ||||    
T  40871580 cttctttttggtgaaagatccgatcattcctttcaagccaaatcacccacacaaatgatagccaaataaggttaagagctgag 40871662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 7 - 109
Target Start/End: Complemental strand, 27324613 - 27324511
Alignment:
Q  7 agttacatccaaatttaattaaaatttattcataataccaaaattatcattactcatttccatcccactcttatgaatgatacgtgattttaattcacgt 106  Q
    ||||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  27324613 agttacacccaaattcaattaaaatttattcataataccaaaattatccttactcatttccttcccactcttatgaatggtacgtgattttaattcacgt 27324514  T
Q  107 tag 109  Q
    |||    
T  27324513 tag 27324511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 288 - 460
Target Start/End: Original strand, 40858195 - 40858367
Alignment:
Q  288 taaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaa 387  Q
    ||||||| | |||||| ||||||||||||||||||| || || ||||||||||||||||| ||||| |||||||||||||||| |||||||||||  |||    
T  40858195 taaccactaagaatggaaggagaaaacaaaactaggacgattagctttcagccatcagtaagattgaagcttaactttatctagcaattgattaatcgaa 40858294  T
Q  388 acttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagat 460  Q
     ||||| ||| |||||| |  ||||||||  ||||||| || ||||||||||||||||||| ||| |||||||    
T  40858295 gcttctgtttggtgaaaaacccgagcattcatttcaagccaaatcacccacacacaagataaccatataagat 40858367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 289 - 499
Target Start/End: Original strand, 17194058 - 17194267
Alignment:
Q  289 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaa 388  Q
    |||||||| ||||||||||||| |||||||||| | || ||  |||||||||| ||||  ||||| |||||||||||||||| ||||||||||||||||     
T  17194058 aaccaccacgaatggtaggagagaacaaaactatgacgattttctttcagccaccagtgagattgaagcttaactttatctagcaattgattaaaagaag 17194157  T
Q  389 cttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaaa 488  Q
    ||| || || || ||| ||   |||||| |||||||| || ||||| ||||||||||||| ||||||||| ||||||||| || || | |||||||||||    
T  17194158 ctttttattggt-aaagatttaagcattcctttcaagtcaaatcactcacacacaagataaccaaataaggttaagagttaagtgtctactgttagaaaa 17194256  T
Q  489 gccgctaaagg 499  Q
     ||||||||||    
T  17194257 accgctaaagg 17194267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 289 - 493
Target Start/End: Complemental strand, 19324152 - 19323948
Alignment:
Q  289 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaa 388  Q
    ||||||||  |||||||||| ||| ||||  |||| ||||||||||||||||| | ||||||||| || |||| ||||||||  |||||||| || ||      
T  19324152 aaccaccacaaatggtaggaaaaagcaaaggtaggacggttcgctttcagccaccggtatgattgaagtttaattttatctagtaattgattgaacgagg 19324053  T
Q  389 cttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaaa 488  Q
    | |||||||  ||||| |  ||||| |||||||| |  || ||||||||||||||||| ||||| || || |||| ||||||||| ||||| || |||||    
T  19324052 cctctttttgatgaaagacccgagcgtttctttctatccaaatcacccacacacaagaaagccatatgaggttaaaagttgagcggttgcttttggaaaa 19323953  T
Q  489 gccgc 493  Q
     ||||    
T  19323952 cccgc 19323948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 289 - 493
Target Start/End: Complemental strand, 32575397 - 32575193
Alignment:
Q  289 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaa 388  Q
    ||||||||  |||||||||| ||| ||||  |||| ||||||||||||||||| ||||||||||| || |||| ||||||||  |||||||| || ||      
T  32575397 aaccaccacaaatggtaggaaaaagcaaaggtaggacggttcgctttcagccaccagtatgattgaagtttaattttatctagtaattgattgaacgagg 32575298  T
Q  389 cttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaaa 488  Q
    | |||||||  ||||| |  ||||  |||||||| |  || ||||||||||||||||| ||||| || ||||||| || |||||| ||||| || |||||    
T  32575297 cctctttttgatgaaagacccgagtgtttctttctatccaaatcacccacacacaagaaagccatatgagattaaaagctgagcgattgcttttggaaaa 32575198  T
Q  489 gccgc 493  Q
     ||||    
T  32575197 cccgc 32575193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 289 - 493
Target Start/End: Complemental strand, 38142167 - 38141963
Alignment:
Q  289 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaa 388  Q
    ||||||||  |||||||||| ||| ||||  |||| ||||||||||||||||| ||||||||||| || |||| ||||||||| |||||| | || ||      
T  38142167 aaccaccacaaatggtaggaaaaagcaaaggtaggacggttcgctttcagccaccagtatgattgaagtttaattttatctaataattgaatgaacgagg 38142068  T
Q  389 cttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaaa 488  Q
    | |||||||  ||||| |  ||||  |||||||| |  || ||||||||||||||||| ||||| || ||||||| || |||||| ||||| || |||||    
T  38142067 cctctttttgatgaaagacccgagtgtttctttctatccaaatcacccacacacaagaaagccatatgagattaaaagctgagcggttgcttttggaaaa 38141968  T
Q  489 gccgc 493  Q
     ||||    
T  38141967 cccgc 38141963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 299 - 376
Target Start/End: Complemental strand, 8124042 - 8123965
Alignment:
Q  299 aatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaatt 376  Q
    ||||||||||||||||||||||||| || || ||||||| ||| ||||| ||||| ||||||||||||||||||||||    
T  8124042 aatggtaggagaaaacaaaactaggacgattagctttcaaccaccagtaagattgaagcttaactttatctaacaatt 8123965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 289 - 493
Target Start/End: Complemental strand, 29626841 - 29626637
Alignment:
Q  289 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaa 388  Q
    ||||||||  |||||||||| ||| ||||  |||| |||||||||||||||||||||||| |||| || |||| |||||| |  |||||| | || ||      
T  29626841 aaccaccacaaatggtaggaaaaagcaaaggtaggacggttcgctttcagccatcagtattattgaagtttaattttatcaagtaattgaatgaacgagg 29626742  T
Q  389 cttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaaa 488  Q
    | |||||||  ||||| || ||||  |||||||| |  || ||||||||||||||||| ||||| || ||||||| || |||||| ||||| || |||||    
T  29626741 cctctttttgatgaaagatccgagtgtttctttctatccaaatcacccacacacaagaaagccatatgagattaaaagctgagcggttgcttttggaaaa 29626642  T
Q  489 gccgc 493  Q
     ||||    
T  29626641 cccgc 29626637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 289 - 404
Target Start/End: Original strand, 12623082 - 12623197
Alignment:
Q  289 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaa 388  Q
    ||||| |||||||||||| |||||||||||||||| || || || ||| ||||  |||| ||||| ||||| |||||||||| |||||| |||||||||     
T  12623082 aaccatcatgaatggtagaagaaaacaaaactaggacgatttgccttcggccacaagtaagattgaagcttgactttatctagcaattgtttaaaagaag 12623181  T
Q  389 cttctttttagtgaaa 404  Q
    | ||||||| ||||||    
T  12623182 cctctttttggtgaaa 12623197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 289 - 488
Target Start/End: Original strand, 18299621 - 18299820
Alignment:
Q  289 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaa 388  Q
    ||||||||  |||||||||| ||| |||| ||||| |||||| |||||||||| ||||||||||| || |||| ||||||||  |||||||  || ||      
T  18299621 aaccaccacaaatggtaggaaaaagcaaagctaggacggttccctttcagccaccagtatgattgaagtttaattttatctagtaattgatggaacgagg 18299720  T
Q  389 cttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaaa 488  Q
    | |||||||  ||||| |  |||||  ||||||| |  || ||||||||||||||||| ||||| || ||||||| || |||||| ||||| || |||||    
T  18299721 cctctttttgatgaaagacccgagcgattctttctatccaaatcacccacacacaagaaagccatatgagattaaaagctgagcggttgcttttggaaaa 18299820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 289 - 493
Target Start/End: Complemental strand, 15669619 - 15669415
Alignment:
Q  289 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaa 388  Q
    ||||||||  |||||||||| ||| ||||  |||| ||||||||||||||||| ||||||||||| || |||| ||||||||  |||||||| ||  |      
T  15669619 aaccaccacaaatggtaggaaaaagcaaaggtaggacggttcgctttcagccaccagtatgattgaagtttaattttatctagtaattgattgaacaagg 15669520  T
Q  389 cttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaaa 488  Q
    | |||||||   |||| |  ||||  |||||||| |   | ||||||||||||||||| ||||| || ||||||| ||||||||| ||||| || |||||    
T  15669519 cctctttttgaagaaagacccgagtgtttctttctatcgaaatcacccacacacaagaaagccatatgagattaaaagttgagcggttgcttttggaaaa 15669420  T
Q  489 gccgc 493  Q
     ||||    
T  15669419 cccgc 15669415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 132 - 187
Target Start/End: Original strand, 9942602 - 9942657
Alignment:
Q  132 aagaaacaaaaatggattacaatactaaaagtctggagatttcagcacaaggagtg 187  Q
    ||||||| ||||||||||| |||||| |||||||||||||||||||||||||||||    
T  9942602 aagaaactaaaatggattaaaatactgaaagtctggagatttcagcacaaggagtg 9942657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 131 - 188
Target Start/End: Original strand, 28782014 - 28782071
Alignment:
Q  131 gaagaaacaaaaatggattacaatactaaaagtctggagatttcagcacaaggagtgc 188  Q
    |||||||| ||||||||||| |||||| |||| |||||||||||||||||||||||||    
T  28782014 gaagaaactaaaatggattaaaatactgaaagcctggagatttcagcacaaggagtgc 28782071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 289 - 493
Target Start/End: Original strand, 29126031 - 29126233
Alignment:
Q  289 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaa 388  Q
    ||||||||  |||||||||| ||| ||||  |||| ||||||||||||||||| ||||||||||| |  |||| ||||||||  |||||||| || ||      
T  29126031 aaccaccacaaatggtaggaaaaagcaaaggtaggacggttcgctttcagccaccagtatgattgaaatttaattttatctagtaattgattgaacgagg 29126130  T
Q  389 cttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaaa 488  Q
    | |||||||  ||||| |  ||||  |||||||| |  || ||||||  ||||||||| ||||| || ||||||| || |||||| ||||| || |||||    
T  29126131 cctctttttgatgaaagacccgagtgtttctttctatccaaatcacc--cacacaagaaagccatatgagattaaaagctgagcggttgcttttggaaaa 29126228  T
Q  489 gccgc 493  Q
     ||||    
T  29126229 cccgc 29126233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 131 - 186
Target Start/End: Complemental strand, 9949031 - 9948976
Alignment:
Q  131 gaagaaacaaaaatggattacaatactaaaagtctggagatttcagcacaaggagt 186  Q
    |||||||| ||||||||||| |||||| |||| ||| |||||||||||||||||||    
T  9949031 gaagaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagt 9948976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 188
Target Start/End: Complemental strand, 11621465 - 11621408
Alignment:
Q  131 gaagaaacaaaaatggattacaatactaaaagtctggagatttcagcacaaggagtgc 188  Q
    |||||| | ||||||||||| | |||| |||| |||||||||||||||||||||||||    
T  11621465 gaagaagctaaaatggattatattactgaaagcctggagatttcagcacaaggagtgc 11621408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 188
Target Start/End: Original strand, 40871301 - 40871358
Alignment:
Q  131 gaagaaacaaaaatggattacaatactaaaagtctggagatttcagcacaaggagtgc 188  Q
    |||||| | ||||||||||| | || |||||| |||||||||||||||||||||||||    
T  40871301 gaagaagctaaaatggattatattattaaaagcctggagatttcagcacaaggagtgc 40871358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 261 - 290
Target Start/End: Complemental strand, 9948901 - 9948872
Alignment:
Q  261 ctgttacataaatattcctaagcaaggtaa 290  Q
    ||||||||||||||||||||||||||||||    
T  9948901 ctgttacataaatattcctaagcaaggtaa 9948872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 225; Significance: 1e-123; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-123
Query Start/End: Original strand, 519 - 861
Target Start/End: Complemental strand, 28359271 - 28358934
Alignment:
Q  519 taaaacaaaaacctcaaaatccacctgatacataattcctttgctgtctgcatctacaccatcttcacacaaccatggatgatgatttccaccaaccaac 618  Q
    |||||||| |||||||||||||||||||||||| ||||||||| || |||||||||||   |||||||||| ||||||||||||||||||||||||||||    
T  28359271 taaaacaacaacctcaaaatccacctgatacatgattcctttgttgcctgcatctacattgtcttcacacacccatggatgatgatttccaccaaccaac 28359172  T
Q  619 caatatgaaccaccatggacgatgcaattgggaactatcaatgtgaaacc-tctcaaatgcaaacaccaaagcatataagtttttcttatttatttttcc 717  Q
     ||||||||||| |||||| |||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  28359171 -aatatgaaccatcatggaggatgcaattgggaactatcagtgtgaaaccctctcaaatgcaaacaccaaagcatataagtttttcttatttatttttcc 28359073  T
Q  718 cattgttgattttgttgtactttaaaatcgatcaaatcaagcaccaaagcaaatgcttcgtctaattaaatatctcttagttatttgcaattgaaaagca 817  Q
    |||||||||||||||| | |||||||||| |||||| |||||||||||||  ||||||||||||||||||| ||||    ||||||||||||||||| ||    
T  28359072 cattgttgattttgtttttctttaaaatcaatcaaagcaagcaccaaagc--atgcttcgtctaattaaatctctc----ttatttgcaattgaaaaaca 28358979  T
Q  818 ctattccc-tttattttgtttatttcacaaacttttgcttttgta 861  Q
    |||||||| ||||||||||||||||||||||||||||||||||||    
T  28358978 ctattcccttttattttgtttatttcacaaacttttgcttttgta 28358934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 263 - 499
Target Start/End: Complemental strand, 42718539 - 42718294
Alignment:
Q  263 gttacataaatattcctaagcaaggtaa---------ccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattg 353  Q
    ||||||||||||||||||||||||||||         |||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||    
T  42718539 gttacataaatattcctaagcaaggtaaagggttcaaccaccatgaatggtaggagaaaacaaaattaggtcggttcgctttcagccaccagtatgattg 42718440  T
Q  354 gagcttaactttatctaacaattgattaaaagaaacttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaa 453  Q
    ||||||||||||||||||||||||||||||| || ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  42718439 gagcttaactttatctaacaattgattaaaataagcttctttttggtgaaatatgcgagcatttctttcaagccagatcacccacacacaagatagccaa 42718340  T
Q  454 ataagattaagagttgagcgtttgctgttagaaaagccgctaaagg 499  Q
    |||||||||||||||||||||||| |||||||||||||||||||||    
T  42718339 ataagattaagagttgagcgtttgttgttagaaaagccgctaaagg 42718294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 184; E-Value: 4e-99
Query Start/End: Original strand, 261 - 499
Target Start/End: Complemental strand, 43499268 - 43499021
Alignment:
Q  261 ctgttacataaatattcctaagcaaggtaa---------ccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgat 351  Q
    ||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  43499268 ctgttacataaatattcctaagcaaggtaaagggttcaaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccaccagtatgat 43499169  T
Q  352 tggagcttaactttatctaacaattgattaaaagaaacttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagcc 451  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| | |||||||||||||||||||||||||    
T  43499168 tggagcttaactttatctaacaattgattaaaagaagcttctttttggtgaaatatgcgagcatttctttcacgccagatcacccacacacaagatagcc 43499069  T
Q  452 aaataagattaagagttgagcgtttgctgttagaaaagccgctaaagg 499  Q
    ||||||||||||| |||||||||||||| ||||| |||||||||||||    
T  43499068 aaataagattaagtgttgagcgtttgctattagagaagccgctaaagg 43499021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 183; E-Value: 2e-98
Query Start/End: Original strand, 262 - 499
Target Start/End: Original strand, 36651871 - 36652117
Alignment:
Q  262 tgttacataaatattcctaagcaaggtaa---------ccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgatt 352  Q
    |||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||| ||||||||||||||||||| || |||||||    
T  36651871 tgttacataaatattcctaagcaaggtaaagggttcaaccaccatgaatggtaggagaaaacaaaactaagtcggttcgctttcagccaccaatatgatt 36651970  T
Q  353 ggagcttaactttatctaacaattgattaaaagaaacttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagcca 452  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  36651971 ggagcttaactttatctaacaattgattaaaagaagcttctttttggtgaaatatgcgagcatttctttcaagccagatcacccacacacaagatagcca 36652070  T
Q  453 aataagattaagagttgagcgtttgctgttagaaaagccgctaaagg 499  Q
    ||||||||||||||||||| ||||||||||||| |||||||||||||    
T  36652071 aataagattaagagttgagtgtttgctgttagagaagccgctaaagg 36652117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 167; E-Value: 5e-89
Query Start/End: Original strand, 289 - 499
Target Start/End: Complemental strand, 7743506 - 7743296
Alignment:
Q  289 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaa 388  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||| |||||||||||||||||||     
T  7743506 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcaaccaccagtatgattgaagcttaactttatttaacaattgattaaaagaag 7743407  T
Q  389 cttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaaa 488  Q
    ||||||||| ||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||    
T  7743406 cttctttttggtggaatatgcgagcatttctttcaagccagatcacccacacgcaagatagccaaataagattaagagttgagcgtttgctgttagagaa 7743307  T
Q  489 gccgctaaagg 499  Q
    |||| ||||||    
T  7743306 gccgttaaagg 7743296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 289 - 499
Target Start/End: Original strand, 39059887 - 39060097
Alignment:
Q  289 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaa 388  Q
    |||||||||||||||||||||||||||||||| ||  ||||||||||||| || ||||||||||| ||||||| |||||||||||||||||||||||||     
T  39059887 aaccaccatgaatggtaggagaaaacaaaacttgggtggttcgctttcagtcaccagtatgattgaagcttaattttatctaacaattgattaaaagaag 39059986  T
Q  389 cttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaaa 488  Q
    ||||||||| ||| ||||| |||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||    
T  39059987 cttctttttggtggaatattcgagcattcctttcaagtcagatcacccacacacaagatagtcaaataagattaagagctgagcgtttgctgttagaaaa 39060086  T
Q  489 gccgctaaagg 499  Q
    |||||||||||    
T  39060087 gccgctaaagg 39060097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 144; E-Value: 3e-75
Query Start/End: Original strand, 261 - 499
Target Start/End: Original strand, 9896635 - 9896882
Alignment:
Q  261 ctgttacataaatattcctaagcaaggtaa---------ccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgat 351  Q
    |||||||||||||||||| |||||||||||         |||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||    
T  9896635 ctgttacataaatattcccaagcaaggtaaagggttcaaccaccatgaatggtaggagaaaacaaaacttgggcggttcgctttcagccaccagtatgat 9896734  T
Q  352 tggagcttaactttatctaacaattgattaaaagaaacttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagcc 451  Q
    || || ||||||||||||||||||||||||||| || ||||||||| ||| ||||| |||||||| |||||||| |||||||||||||||||||||||||    
T  9896735 tgaagtttaactttatctaacaattgattaaaataagcttctttttggtggaatattcgagcattcctttcaagccagatcacccacacacaagatagcc 9896834  T
Q  452 aaataagattaagagttgagcgtttgctgttagaaaagccgctaaagg 499  Q
    ||||||||||||||| | ||||||||| |||||| ||||| |||||||    
T  9896835 aaataagattaagagattagcgtttgccgttagagaagccactaaagg 9896882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 289 - 499
Target Start/End: Original strand, 37870824 - 37871034
Alignment:
Q  289 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaa 388  Q
    ||||||||||||||||||||||||||||||| ||| || || || ||||||||  |||| ||||| | ||| |||||||||| ||||||||||||||||     
T  37870824 aaccaccatgaatggtaggagaaaacaaaaccaggacgatttgccttcagccactagtaagattgaaacttgactttatctagcaattgattaaaagaag 37870923  T
Q  389 cttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaaa 488  Q
    ||||||||| |||||| || ||| |||| |||||||| || ||||| |||||||| |||||||||||||| ||||||| |||| ||||| |||| |||||    
T  37870924 cttctttttggtgaaagatccgatcattcctttcaagccaaatcactcacacacatgatagccaaataaggttaagagctgagtgtttgttgtttgaaaa 37871023  T
Q  489 gccgctaaagg 499  Q
     ||| ||||||    
T  37871024 accgataaagg 37871034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 288 - 460
Target Start/End: Complemental strand, 40850739 - 40850567
Alignment:
Q  288 taaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaa 387  Q
    ||||||||| ||||||||||| |||||||||||||| || || ||||||||||| ||||| ||||| |||||||||||||||| |||||||||||  |||    
T  40850739 taaccaccaagaatggtaggaaaaaacaaaactaggacgattagctttcagccaccagtaagattgaagcttaactttatctagcaattgattaatcgaa 40850640  T
Q  388 acttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagat 460  Q
     ||||| ||| |||||| || ||||||||  ||||||| || ||||||||||||||||||| ||| |||||||    
T  40850639 gcttctgtttggtgaaaaatccgagcattcatttcaagccaaatcacccacacacaagataaccatataagat 40850567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 288 - 448
Target Start/End: Original strand, 47590630 - 47590790
Alignment:
Q  288 taaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaa 387  Q
    ||||||||| |||||||||||||||||||||||||| || || ||||||||||| || || ||||| |||||||||||||||| |||||||||||  |||    
T  47590630 taaccaccaagaatggtaggagaaaacaaaactaggacgatttgctttcagccaccaataagattgaagcttaactttatctagcaattgattaatcgaa 47590729  T
Q  388 acttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagata 448  Q
    |||||| ||| |||||| |  |||||||| |||||||| || |||||||||||||||||||    
T  47590730 acttctgtttggtgaaaaacccgagcattcctttcaagccaaatcacccacacacaagata 47590790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 7 - 109
Target Start/End: Complemental strand, 28359408 - 28359306
Alignment:
Q  7 agttacatccaaatttaattaaaatttattcataataccaaaattatcattactcatttccatcccactcttatgaatgatacgtgattttaattcacgt 106  Q
    ||||||| ||||||| | ||||||||||||||||||| |||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  28359408 agttacacccaaattcatttaaaatttattcataatatcaaaattatccttactcatttccttcccactcttatgaatgatacgtgattttaattcacgt 28359309  T
Q  107 tag 109  Q
    |||    
T  28359308 tag 28359306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 298 - 460
Target Start/End: Complemental strand, 56024960 - 56024798
Alignment:
Q  298 gaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaacttcttttt 397  Q
    |||||||||||||||||||||||||| || || ||||||||||| ||||| ||||| |||||||||||||||| |||||||||||  ||| ||||| |||    
T  56024960 gaatggtaggagaaaacaaaactaggacgatttgctttcagccaccagtaagattgaagcttaactttatctagcaattgattaatcgaagcttctgttt 56024861  T
Q  398 agtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagat 460  Q
     |||||| |  |||||||| |||||||| || |||| |||||||||||||| ||| |||||||    
T  56024860 ggtgaaaaacccgagcattcctttcaagccaaatcaaccacacacaagataaccatataagat 56024798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 288 - 459
Target Start/End: Complemental strand, 48640659 - 48640488
Alignment:
Q  288 taaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaa 387  Q
    ||||||||| |||||||||||||||||||||||| | || || ||||||||||| ||||| ||||| || ||||||||||||| || ||||||||  |||    
T  48640659 taaccaccaagaatggtaggagaaaacaaaactatgacgatttgctttcagccaccagtaagattgaagattaactttatctagcagttgattaatcgaa 48640560  T
Q  388 acttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataaga 459  Q
     ||||| ||| |||||| |  ||||||||  ||||||| || ||||||||||||||||||| ||| ||||||    
T  48640559 gcttctgtttggtgaaaaacccgagcattcatttcaagccaaatcacccacacacaagataaccatataaga 48640488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 355 - 440
Target Start/End: Original strand, 23106853 - 23106938
Alignment:
Q  355 agcttaactttatctaacaattgattaaaagaaacttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacac 440  Q
    ||||||| |||||||| |||||||||||||||| ||||||||| |||||| || |||||||| |||||||| || |||||||||||    
T  23106853 agcttaattttatctagcaattgattaaaagaagcttctttttggtgaaagatccgagcattcctttcaagccaaatcacccacac 23106938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 325 - 479
Target Start/End: Complemental strand, 50771697 - 50771543
Alignment:
Q  325 cggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaacttctttttagtgaaatatgcgagcatttctttcaa 424  Q
    ||||||||||||||||| ||||||||||| ||  ||| ||||||||  |||||||| || || || |||||||  ||||| |  ||||  |||||||| |    
T  50771697 cggttcgctttcagccaccagtatgattgaagtataattttatctagtaattgattgaacgagacctctttttgatgaaagactcgagtgtttctttcta 50771598  T
Q  425 ggcagatcacccacacacaagatagccaaataagattaagagttgagcgtttgct 479  Q
    | || ||||||||||||||||| ||||| || ||||||| || |||||| |||||    
T  50771597 gccaaatcacccacacacaagaaagccatatgagattaaaagctgagcggttgct 50771543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 289 - 493
Target Start/End: Original strand, 40345959 - 40346163
Alignment:
Q  289 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaa 388  Q
    ||||||||  |||||||||| ||| ||||  || | | ||||||||||||||| ||||||||||| || |||| ||||||||  |||||| | || ||      
T  40345959 aaccaccacaaatggtaggaaaaagcaaaggtatgacagttcgctttcagccaccagtatgattgaagtttaattttatctagtaattgaatgaacgagg 40346058  T
Q  389 cttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaaa 488  Q
    | |||||||  ||||| |  ||||  |||||||| |  || ||||||||||||||||| ||||| || ||||||| || |||||| ||||| || |||||    
T  40346059 cctctttttgatgaaagacccgagtgtttctttctatccaaatcacccacacacaagaaagccatatgagattaaaagctgagcggttgcttttggaaaa 40346158  T
Q  489 gccgc 493  Q
     ||||    
T  40346159 cccgc 40346163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 436 - 499
Target Start/End: Original strand, 23108098 - 23108161
Alignment:
Q  436 cacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaaagccgctaaagg 499  Q
    |||||||| |||||||||||||| ||||||| |||| |||||||||| ||||| ||||||||||    
T  23108098 cacacacatgatagccaaataaggttaagagctgagtgtttgctgtttgaaaaaccgctaaagg 23108161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 289 - 488
Target Start/End: Original strand, 30598406 - 30598605
Alignment:
Q  289 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaa 388  Q
    ||||||||  |||||||||| ||| ||||  ||||| |||||||||||||||| ||||||||||| || |||| |||||| |  |||||||| || || |    
T  30598406 aaccaccacaaatggtaggaaaaagcaaaggtaggttggttcgctttcagccaccagtatgattgaagtttaattttatccagtaattgattgaacgata 30598505  T
Q  389 cttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaaa 488  Q
    | |||||||  ||||| |   | |  |||||||| |  || ||||||||||||||||| || || || ||||||| || |||||| ||||| || |||||    
T  30598506 cctctttttgatgaaagacctgtgtgtttctttctatccaaatcacccacacacaagaaagtcatatgagattaaaagctgagcggttgcttttggaaaa 30598605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 135 - 188
Target Start/End: Original strand, 37870649 - 37870702
Alignment:
Q  135 aaacaaaaatggattacaatactaaaagtctggagatttcagcacaaggagtgc 188  Q
    |||| ||||||||||| | |||| ||||||||||||||||||||||||||||||    
T  37870649 aaactaaaatggattatattactcaaagtctggagatttcagcacaaggagtgc 37870702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 188
Target Start/End: Complemental strand, 43499397 - 43499341
Alignment:
Q  132 aagaaacaaaaatggattacaatactaaaagtctggagatttcagcacaaggagtgc 188  Q
    ||||||| ||||||||||| |||||| ||||  ||||||||||||||||||||||||    
T  43499397 aagaaactaaaatggattaaaatactgaaagcttggagatttcagcacaaggagtgc 43499341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 188
Target Start/End: Original strand, 36651742 - 36651797
Alignment:
Q  133 agaaacaaaaatggattacaatactaaaagtctggagatttcagcacaaggagtgc 188  Q
    |||||| ||||||||||| ||||   ||||| ||||||||||||||||||||||||    
T  36651742 agaaactaaaatggattaaaatatcgaaagtttggagatttcagcacaaggagtgc 36651797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 50
Target Start/End: Complemental strand, 50344901 - 50344859
Alignment:
Q  8 gttacatccaaatttaattaaaatttattcataataccaaaat 50  Q
    ||||||||||| ||||||||||||| || ||||||||||||||    
T  50344901 gttacatccaattttaattaaaattaatccataataccaaaat 50344859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 188
Target Start/End: Complemental strand, 7743669 - 7743616
Alignment:
Q  135 aaacaaaaatggattacaatactaaaagtctggagatttcagcacaaggagtgc 188  Q
    |||| ||||||||||| || ||| ||||  ||||||||||||||||||||||||    
T  7743669 aaactaaaatggattaaaaaactgaaagcatggagatttcagcacaaggagtgc 7743616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 198; Significance: 1e-107; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 519 - 861
Target Start/End: Complemental strand, 3500710 - 3500371
Alignment:
Q  519 taaaacaaaaacctcaaaatccacc---tgatacataattcctttgctgtctgcatctacaccatcttcacacaaccatggatgatgatttccaccaacc 615  Q
    |||||||| ||||||||||||||||   |||||||| |||| |||| || ||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  3500710 taaaacaacaacctcaaaatccaccacctgatacatgattcatttgttgcctgcatctacactgtcttcacacaaccatggatgatgatttccaccaacc 3500611  T
Q  616 aaccaatatgaaccaccatggacgatgcaattgggaactatcaatgtgaaacc-tctcaaatgcaaacaccaaagcatataagtttttcttatttatttt 714  Q
    || |||||||||| | |||||| |||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  3500610 aa-caatatgaactatcatggaggatgcaattgcgaactatcagtgtgaaaccttctcaaatgcaaacaccaaagcatataagtttttcttatttatttt 3500512  T
Q  715 tcccattgttgattttgttgtactttaaaatcgatcaaatcaagcaccaaagcaaatgcttcgtctaattaaatatctcttagttatttgcaattgaaaa 814  Q
    | ||||||||||||||||| | |||||||||| |||||| |||||||||||  | ||||||||||||||||||| ||||    |||||||||||||||||    
T  3500511 t-ccattgttgattttgtttttctttaaaatcaatcaaagcaagcaccaaa--acatgcttcgtctaattaaatctctc----ttatttgcaattgaaaa 3500419  T
Q  815 gcactattccc-tttattttgtttatttcacaaacttttgcttttgta 861  Q
     |||||||||| ||||||||||||||||||||||||||||||||||||    
T  3500418 acactattcccttttattttgtttatttcacaaacttttgcttttgta 3500371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 108; E-Value: 9e-54
Query Start/End: Original strand, 289 - 495
Target Start/End: Original strand, 18972786 - 18972993
Alignment:
Q  289 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaa-caattgattaaaagaa 387  Q
    ||||||||||||||||||||||||||||||||||| || || |||||||||||  |||| ||||| |||||||||||||| || |||||||||||| |||    
T  18972786 aaccaccatgaatggtaggagaaaacaaaactaggacgatttgctttcagccacgagtaagattgaagcttaactttatcaaagcaattgattaaacgaa 18972885  T
Q  388 acttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaa 487  Q
     ||||||||| |||||| ||  ||||||| |||||||| || |||||||||||||||||||||||||||||||||||||  |||  |||| |||||||||    
T  18972886 gcttctttttggtgaaagattagagcattcctttcaagccaaatcacccacacacaagatagccaaataagattaagagcggagtttttgttgttagaaa 18972985  T
Q  488 agccgcta 495  Q
    | ||||||    
T  18972986 aaccgcta 18972993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 289 - 499
Target Start/End: Original strand, 12912426 - 12912636
Alignment:
Q  289 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaa 388  Q
    ||||||||||||||||||||||||||||||||||| || || || |||||||| ||||| ||||| ||||| |||||||||| ||||||||||||||||     
T  12912426 aaccaccatgaatggtaggagaaaacaaaactaggacgatttgccttcagccaccagtaagattgaagcttgactttatctagcaattgattaaaagaag 12912525  T
Q  389 cttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaaa 488  Q
    ||||||||| |||||| || | | |||| |||||||| || |||||||||||||| |||||||||||||| ||||||| |||| ||||| |||| |||||    
T  12912526 cttctttttggtgaaagatccaatcattcctttcaagccatatcacccacacacatgatagccaaataaggttaagagctgagtgtttgttgtttgaaaa 12912625  T
Q  489 gccgctaaagg 499  Q
     ||| ||||||    
T  12912626 accgataaagg 12912636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 289 - 495
Target Start/End: Complemental strand, 24393838 - 24393632
Alignment:
Q  289 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaa 388  Q
    |||||||| |||||||||||||||||||||||||| || ||  |||||||||| ||||| |||||  ||||||||||||| |||||||||||||| |||     
T  24393838 aaccaccacgaatggtaggagaaaacaaaactaggacgatttactttcagccaccagtaagattgaggcttaactttatcaaacaattgattaaacgaag 24393739  T
Q  389 cttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaaa 488  Q
    ||||||||| |||||| || | |||||| |||||| | || |||||||||||||||||||||||||||||||||||||  ||| ||||| ||||||||||    
T  24393738 cttctttttggtgaaagattccagcattcctttcatgccaaatcacccacacacaagatagccaaataagattaagagcggagtgtttgttgttagaaaa 24393639  T
Q  489 gccgcta 495  Q
     ||||||    
T  24393638 accgcta 24393632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 7 - 109
Target Start/End: Complemental strand, 3500847 - 3500745
Alignment:
Q  7 agttacatccaaatttaattaaaatttattcataataccaaaattatcattactcatttccatcccactcttatgaatgatacgtgattttaattcacgt 106  Q
    ||||||| ||||||| ||||||||||||||||||||| |||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||    
T  3500847 agttacacccaaattcaattaaaatttattcataataacaaaattatccttactcatttccttcccactcttatgaatgatacatgattttaattcacgt 3500748  T
Q  107 tag 109  Q
    |||    
T  3500747 tag 3500745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 288 - 448
Target Start/End: Complemental strand, 6029255 - 6029095
Alignment:
Q  288 taaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaa 387  Q
    ||||||||||| |||||||||||||||||||||||| || ||||||||||||||  | || ||||| |||||||||||||||| |||||||||||  |||    
T  6029255 taaccaccatgtatggtaggagaaaacaaaactaggacgattcgctttcagccactaataagattgaagcttaactttatctagcaattgattaatcgaa 6029156  T
Q  388 acttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagata 448  Q
     ||||| ||| |||||| |  |||||||| |||||||| || |||||||| ||||||||||    
T  6029155 gcttctgtttggtgaaaaacccgagcattcctttcaagccaaatcacccaaacacaagata 6029095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 289 - 493
Target Start/End: Complemental strand, 7093850 - 7093646
Alignment:
Q  289 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaa 388  Q
    ||||||||  |||||||||| ||| ||||  |||| ||||||||||||||||| ||||||||||| || |||| ||||||||  |||||| | || ||      
T  7093850 aaccaccacaaatggtaggaaaaagcaaaggtaggacggttcgctttcagccaccagtatgattgaagtttaattttatctagtaattgaatgaacgagg 7093751  T
Q  389 cttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaaa 488  Q
    | |||||||  ||||| |   |||  |||||||| |  || ||||||||||||||||| ||||| || ||||||| || |||||| ||||| || |||||    
T  7093750 cctctttttgatgaaagacctgagtgtttctttctatccaaatcacccacacacaagaaagccatatgagattaaaagctgagcggttgcttttggaaaa 7093651  T
Q  489 gccgc 493  Q
     ||||    
T  7093650 cccgc 7093646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 131 - 187
Target Start/End: Original strand, 12912247 - 12912303
Alignment:
Q  131 gaagaaacaaaaatggattacaatactaaaagtctggagatttcagcacaaggagtg 187  Q
    |||||| | ||||||||||| | ||||||||||||||||||||||||||||||||||    
T  12912247 gaagaagctaaaatggattatattactaaaagtctggagatttcagcacaaggagtg 12912303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 187
Target Start/End: Complemental strand, 165610 - 165556
Alignment:
Q  133 agaaacaaaaatggattacaatactaaaagtctggagatttcagcacaaggagtg 187  Q
    |||||| ||||||||||| | || ||||||||| |||||||||||||||| ||||    
T  165610 agaaactaaaatggattatattattaaaagtcttgagatttcagcacaagaagtg 165556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 190; Significance: 1e-102; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-102
Query Start/End: Original strand, 262 - 498
Target Start/End: Complemental strand, 12410757 - 12410512
Alignment:
Q  262 tgttacataaatattcctaagcaaggtaa---------ccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgatt 352  Q
    |||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  12410757 tgttacataaatattcctaagcaaggtaaagggttcaaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccaccagtatgatt 12410658  T
Q  353 ggagcttaactttatctaacaattgattaaaagaaacttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagcca 452  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| || |||||||||||||||||||||||    
T  12410657 ggagcttaactttatctaacaattgattaaaagaagcttctttttggtgaaatatgcgagcatttctttcaagccatatcacccacacacaagatagcca 12410558  T
Q  453 aataagattaagagttgagcgtttgctgttagaaaagccgctaaag 498  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||    
T  12410557 aataagattaagagttgagcgtttgctgttagagaagccgctaaag 12410512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 289 - 499
Target Start/End: Complemental strand, 6764354 - 6764144
Alignment:
Q  289 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaa 388  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||     
T  6764354 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccaccagtatgattgaagcttaactttatctaacaattgattaaaagaag 6764255  T
Q  389 cttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaaa 488  Q
    ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  6764254 cttctttttggtgaaatatgcgagcatttctttcaagccagatcacccacacacaagatagccaaataagattaagagttgagcgtttgctgttagagaa 6764155  T
Q  489 gccgctaaagg 499  Q
    |||||||||||    
T  6764154 gccgctaaagg 6764144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 262 - 499
Target Start/End: Complemental strand, 37647935 - 37647689
Alignment:
Q  262 tgttacataaatattcctaagcaaggtaa---------ccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgatt 352  Q
    |||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  37647935 tgttacataaatattcctaagcaaggtaaagggtccaaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccaccagtatgatt 37647836  T
Q  353 ggagcttaactttatctaacaattgattaaaagaaacttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagcca 452  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||    
T  37647835 ggagcttaactttatctaacaattgattaaaagaagcttctttttggtgaaatatacgagcatttctttcaagccagatcacccacacacaggatagcca 37647736  T
Q  453 aataagattaagagttgagcgtttgctgttagaaaagccgctaaagg 499  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||    
T  37647735 aataagattaagagttgagcgtttgctgttagagaagccgctaaagg 37647689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 184; E-Value: 4e-99
Query Start/End: Original strand, 262 - 496
Target Start/End: Complemental strand, 12422817 - 12422574
Alignment:
Q  262 tgttacataaatattcctaagcaaggtaa---------ccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgatt 352  Q
    |||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  12422817 tgttacataaatattcctaagcaaggtaaagggttcaaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccaccagtatgatt 12422718  T
Q  353 ggagcttaactttatctaacaattgattaaaagaaacttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagcca 452  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| || |||||||||||||||||||||||    
T  12422717 ggagcttaactttatctaacaattgattaaaagaagcttctttttggtgaaatatgcgagcatttctttcaagccatatcacccacacacaagatagcca 12422618  T
Q  453 aataagattaagagttgagcgtttgctgttagaaaagccgctaa 496  Q
    ||||||||||||||||||||||||||||||||| |||| |||||    
T  12422617 aataagattaagagttgagcgtttgctgttagagaagctgctaa 12422574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 289 - 499
Target Start/End: Complemental strand, 27271573 - 27271372
Alignment:
Q  289 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaa 388  Q
    |||||||||||| |||||||||||||||||||||| ||||||| ||||||||| |||||| ||||||||||         |||||||||||||||||||     
T  27271573 aaccaccatgaaaggtaggagaaaacaaaactaggacggttcgttttcagccaccagtataattggagctt---------taacaattgattaaaagaag 27271483  T
Q  389 cttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaaa 488  Q
    ||||||||| ||||||||| ||||||||||||| ||| || |||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||    
T  27271482 cttctttttggtgaaatattcgagcatttcttttaagccaaatcacccacacacaagttaggcaaataagattaagagctgagcgtttgctgttagaaaa 27271383  T
Q  489 gccgctaaagg 499  Q
    |||||||||||    
T  27271382 gccgctaaagg 27271372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 115; E-Value: 6e-58
Query Start/End: Original strand, 289 - 499
Target Start/End: Complemental strand, 11031712 - 11031502
Alignment:
Q  289 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaa 388  Q
    |||||||||||||||||||||||||||||| |||| || || || |||||||| ||||| ||||| ||||| |||||||||| ||||||||||||||||     
T  11031712 aaccaccatgaatggtaggagaaaacaaaattaggacgatttgccttcagccaccagtaagattgaagcttgactttatctagcaattgattaaaagaag 11031613  T
Q  389 cttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaaa 488  Q
    ||||||||| |||||| || |||||||| |||||||| || |||||||||||||| |||||||||||||| ||||||| |||| ||||| |||| |||||    
T  11031612 cttctttttggtgaaagatccgagcattcctttcaagtcaaatcacccacacacatgatagccaaataaggttaagagctgagtgtttgttgtttgaaaa 11031513  T
Q  489 gccgctaaagg 499  Q
     ||||||||||    
T  11031512 accgctaaagg 11031502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 292 - 457
Target Start/End: Original strand, 2380800 - 2380965
Alignment:
Q  292 caccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaactt 391  Q
    ||||| ||||||||||||||||| |||||||| || || ||||||||||| |||||  |||| || ||||||||||||| |||||||||||  ||| |||    
T  2380800 caccaagaatggtaggagaaaacgaaactaggacgatttgctttcagccaccagtaaaattgaagtttaactttatctagcaattgattaattgaagctt 2380899  T
Q  392 ctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataa 457  Q
    || ||| ||||||  |  ||||||| |||||||| || ||||||||||||||||||| ||| ||||    
T  2380900 ctgtttggtgaaaagtctgagcattcctttcaagccaaatcacccacacacaagataaccatataa 2380965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 288 - 382
Target Start/End: Complemental strand, 3044265 - 3044171
Alignment:
Q  288 taaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaa 382  Q
    ||||||||| |||||||||||||||||||||||||| || || ||||||||||| ||||| ||||| |||||||||||||||| |||||||||||    
T  3044265 taaccaccaagaatggtaggagaaaacaaaactaggacgattagctttcagccaccagtaagattgaagcttaactttatctagcaattgattaa 3044171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 288 - 423
Target Start/End: Original strand, 7901139 - 7901278
Alignment:
Q  288 taaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattgga----gcttaactttatctaacaattgattaaa 383  Q
    |||||||||| |||| |||||||||||||||||||| || || ||||||||||| ||||| ||||| |    |||||||||||||||||||||||||||     
T  7901139 taaccaccataaatgataggagaaaacaaaactaggacgatttgctttcagccaccagtaagattgaagcttgcttaactttatctaacaattgattaat 7901238  T
Q  384 agaaacttctttttagtgaaatatgcgagcatttctttca 423  Q
     ||| ||||| ||| |||||| |  |||||||| ||||||    
T  7901239 tgaagcttctgtttggtgaaaaacccgagcattcctttca 7901278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 188
Target Start/End: Complemental strand, 37648057 - 37648009
Alignment:
Q  140 aaaatggattacaatactaaaagtctggagatttcagcacaaggagtgc 188  Q
    ||||||||||| |||||| ||||| ||||||||||||||||||||||||    
T  37648057 aaaatggattaaaatactgaaagtttggagatttcagcacaaggagtgc 37648009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 188
Target Start/End: Original strand, 2702258 - 2702314
Alignment:
Q  132 aagaaacaaaaatggattacaatactaaaagtctggagatttcagcacaaggagtgc 188  Q
    ||||||| ||||||||||| |||||| |||| ||  |||||||||||||||||||||    
T  2702258 aagaaactaaaatggattaaaatactgaaagcctcaagatttcagcacaaggagtgc 2702314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 187
Target Start/End: Complemental strand, 12410888 - 12410832
Alignment:
Q  131 gaagaaacaaaaatggattacaatactaaaagtctggagatttcagcacaaggagtg 187  Q
    |||||||| ||||||||||| |||||| |||| |||||||||||| ||||| |||||    
T  12410888 gaagaaactaaaatggattaaaatactgaaagcctggagatttcatcacaaagagtg 12410832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 187
Target Start/End: Complemental strand, 12422948 - 12422892
Alignment:
Q  131 gaagaaacaaaaatggattacaatactaaaagtctggagatttcagcacaaggagtg 187  Q
    |||||||| ||||||||||| |||||| |||| |||||||||||| ||||| |||||    
T  12422948 gaagaaactaaaatggattaaaatactgaaagcctggagatttcatcacaaagagtg 12422892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 298 - 370
Target Start/End: Original strand, 34394666 - 34394738
Alignment:
Q  298 gaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatcta 370  Q
    |||||||||||||||||||||||||| || || || |||| |||  |||| ||||| |||||| |||||||||    
T  34394666 gaatggtaggagaaaacaaaactaggacgatttgccttcaaccaatagtaagattgaagcttatctttatcta 34394738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 187
Target Start/End: Complemental strand, 27271740 - 27271685
Alignment:
Q  132 aagaaacaaaaatggattacaatactaaaagtctggagatttcagcacaaggagtg 187  Q
    ||||||| ||||| ||||| | |||| |||| ||||||||||||||||||||||||    
T  27271740 aagaaactaaaatagattaaattactgaaagcctggagatttcagcacaaggagtg 27271685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 5609256 - 5609207
Alignment:
Q  8 gttacatccaaatttaattaaaatttattcataataccaaaattatcatt 57  Q
    |||||||||||| |||||||||||||||| |||||||  ||||| |||||    
T  5609256 gttacatccaaagttaattaaaatttattaataatactgaaattgtcatt 5609207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 289 - 499
Target Start/End: Complemental strand, 19021324 - 19021114
Alignment:
Q  289 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaa 388  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||     
T  19021324 aaccaccatgaatggcaggagaaaacaaaactaggtcggttcgctttcagccaccagtatgattggagcttaactttatctaacaattgattaaaagaag 19021225  T
Q  389 cttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaaa 488  Q
    ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  19021224 cttctttttggtgaaatatgcgagcatttctttcaagccagatcacccacacacaagatagccaaataagattaagagttgagcgtttgctgttagagaa 19021125  T
Q  489 gccgctaaagg 499  Q
    |||||||||||    
T  19021124 gccgctaaagg 19021114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 261 - 499
Target Start/End: Complemental strand, 22639530 - 22639283
Alignment:
Q  261 ctgttacataaatattcctaagcaaggtaa---------ccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgat 351  Q
    ||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||| |||||||||| || ||||||    
T  22639530 ctgttacataaatattcctaagcaaggtaaatggttcaaccaccatgaatggtaggagaaaacaaaactaggtcggttcactttcagccaccaatatgat 22639431  T
Q  352 tggagcttaactttatctaacaattgattaaaagaaacttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagcc 451  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||| |||||||||||||||||||||||||    
T  22639430 tggagcttaactttatctaacaattgattaaaagaagcttctttttggtgaaatatgcgagcattcctttcaagccagatcacccacacacaagatagcc 22639331  T
Q  452 aaataagattaagagttgagcgtttgctgttagaaaagccgctaaagg 499  Q
    |||||||||||||||  ||||||||||||||||| |||||||||||||    
T  22639330 aaataagattaagagaagagcgtttgctgttagagaagccgctaaagg 22639283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 288 - 473
Target Start/End: Original strand, 26369110 - 26369295
Alignment:
Q  288 taaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaa 387  Q
    ||||||||| |||| ||||||||||||||||||||| || || ||||||||||| ||||| ||||| |||||||||||||||| |||||||||||  |||    
T  26369110 taaccaccaagaatagtaggagaaaacaaaactaggacgattagctttcagccaccagtaagattgaagcttaactttatctagcaattgattaatcgaa 26369209  T
Q  388 acttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgagcg 473  Q
     ||||| ||| |||||| |  |||||||| |||||||| || ||||||||||||||||||| ||| ||||||| || ||| |||||    
T  26369210 gcttctgtttggtgaaaaacccgagcattcctttcaagccaaatcacccacacacaagataaccatataagatgaaaagtggagcg 26369295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 289 - 478
Target Start/End: Original strand, 22580567 - 22580759
Alignment:
Q  289 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatca---gtatgattggagcttaactttatctaacaattgattaaaag 385  Q
    |||||||| ||||||||||| |||  ||||||||| |  |||||||||||||| ||   ||| ||||| ||||| |||||||||| |||||||||||| |    
T  22580567 aaccaccacgaatggtaggaaaaagtaaaactaggactattcgctttcagccagcaccagtaagattgaagcttcactttatctagcaattgattaaacg 22580666  T
Q  386 aaacttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgagcgtttgc 478  Q
    ||  || | |||  ||||| |  ||| |||| |||||||| || ||||||| ||||||||||||||| |||||||||| ||||||||| ||||    
T  22580667 aagtttatatttgttgaaagacccgaacattcctttcaagccaaatcacccgcacacaagatagccatataagattaaaagttgagcggttgc 22580759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 289 - 479
Target Start/End: Original strand, 25982354 - 25982544
Alignment:
Q  289 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaa 388  Q
    ||||||||  |||||||||| |||||||| || || ||||||||||||||||| ||||||||||| || |||| ||||||||  |||||||  || || |    
T  25982354 aaccaccacaaatggtaggaaaaaacaaagcttggacggttcgctttcagccaccagtatgattgaagtttaattttatctagtaattgatggaacgaga 25982453  T
Q  389 cttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgagcgtttgct 479  Q
    | |||||||  ||||| |  || || |||||||| |  || |||||||||||| |||| ||||| || ||||||| ||||||||| |||||    
T  25982454 cctctttttgatgaaagacacgggcgtttctttctatccaaatcacccacacagaagaaagccatatgagattaaaagttgagcggttgct 25982544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 289 - 488
Target Start/End: Original strand, 40973447 - 40973646
Alignment:
Q  289 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaa 388  Q
    ||||||||  |||||||||| |||  ||||||||| ||||||||||||||||| ||||||||||| || |||| ||||||||  |||||||  || ||      
T  40973447 aaccaccacaaatggtaggaaaaagtaaaactaggacggttcgctttcagccaccagtatgattgaagtttaattttatctagtaattgatggaacgagg 40973546  T
Q  389 cttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaaa 488  Q
    | |||||||  ||||| |  ||||| |||||||| |  || || |||||||||||||| ||||| || ||||||| || |||||| ||||| || |||||    
T  40973547 cctctttttgatgaaagacccgagcgtttctttctatccaaataacccacacacaagaaagccatatgagattaaaagctgagcggttgcttttggaaaa 40973646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 131 - 188
Target Start/End: Complemental strand, 22639660 - 22639603
Alignment:
Q  131 gaagaaacaaaaatggattacaatactaaaagtctggagatttcagcacaaggagtgc 188  Q
    |||||||| ||||||||||| |||||| ||||| ||||||||||| ||||||||||||    
T  22639660 gaagaaactaaaatggattaaaatactgaaagtttggagatttcatcacaaggagtgc 22639603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 289 - 321
Target Start/End: Complemental strand, 6537011 - 6536979
Alignment:
Q  289 aaccaccatgaatggtaggagaaaacaaaacta 321  Q
    |||||||||||||||||||||||||||||||||    
T  6537011 aaccaccatgaatggtaggagaaaacaaaacta 6536979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 188
Target Start/End: Original strand, 39143220 - 39143276
Alignment:
Q  132 aagaaacaaaaatggattacaatactaaaagtctggagatttcagcacaaggagtgc 188  Q
    ||||||| ||||||||||| |||||  |||| ||||||||||||||| |||||||||    
T  39143220 aagaaactaaaatggattaaaataccgaaagcctggagatttcagcataaggagtgc 39143276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 27771385 - 27771336
Alignment:
Q  7 agttacatccaaatttaattaaaatttattcataataccaaaattatcat 56  Q
    ||||||||||||||||| ||||||||||   |||||||||||||| ||||    
T  27771385 agttacatccaaatttatttaaaatttaacaataataccaaaattgtcat 27771336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 184; Significance: 4e-99; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 184; E-Value: 4e-99
Query Start/End: Original strand, 261 - 499
Target Start/End: Original strand, 8444389 - 8444636
Alignment:
Q  261 ctgttacataaatattcctaagcaaggtaa---------ccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgat 351  Q
    ||||||||||||||||||||||||||||||         | ||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||    
T  8444389 ctgttacataaatattcctaagcaaggtaaagagttcaacaaccatgaatggtaagagaaaacaaaactaggtcgattcgctttcagccaccagtatgat 8444488  T
Q  352 tggagcttaactttatctaacaattgattaaaagaaacttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagcc 451  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  8444489 tggagcttaactttatctaacaattgattaaaagaagcttctttttggtgaaatatgcgagcattcctttcaaggcagatcacccacacacaagatagcc 8444588  T
Q  452 aaataagattaagagttgagcgtttgctgttagaaaagccgctaaagg 499  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||    
T  8444589 aaataagattaagagttgagcgtttgctgttagagaagccgctaaagg 8444636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 261 - 498
Target Start/End: Complemental strand, 24504025 - 24503779
Alignment:
Q  261 ctgttacataaatattcctaagcaaggtaa---------ccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgat 351  Q
    ||||||||||||||||||||| ||||||||         ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||    
T  24504025 ctgttacataaatattcctaaacaaggtaaagggttcagccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcaaccaccagtatgat 24503926  T
Q  352 tggagcttaactttatctaacaattgattaaaagaaacttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagcc 451  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |||| |||||||| || ||||||||||||||||||||||    
T  24503925 tggagcttaactttatctaacaattgattaaaagaagcttctttttggtgaaatatgcgaacattactttcaagacaaatcacccacacacaagatagcc 24503826  T
Q  452 aaataagattaagagttgagcgtttgctgttagaaaagccgctaaag 498  Q
    |||||||||||||||||||||||||||||||||| |||| |||||||    
T  24503825 aaataagattaagagttgagcgtttgctgttagagaagcagctaaag 24503779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 140; E-Value: 7e-73
Query Start/End: Original strand, 289 - 492
Target Start/End: Complemental strand, 45540249 - 45540046
Alignment:
Q  289 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaa 388  Q
    ||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||     
T  45540249 aaccaccatgaatggtaggagaaaacaaaactaaggcggttcgctttcagccaccagtatgattgaagtttaactttatctaacaattgattaaaagaag 45540150  T
Q  389 cttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaaa 488  Q
    ||||||||| ||||||| | |||||||| ||||||||  |||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||||| ||    
T  45540149 cttctttttggtgaaatgttcgagcattcctttcaagctagatcacccacacacaagatagacaaataagattaagagttgagagtttgttgttagagaa 45540050  T
Q  489 gccg 492  Q
    ||||    
T  45540049 gccg 45540046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 289 - 499
Target Start/End: Original strand, 4034467 - 4034677
Alignment:
Q  289 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaa 388  Q
    ||||||||||||||||||||||||||||||||||| || || ||||||||||| ||||| ||||| ||||| |||||||| | ||||||||||||||||     
T  4034467 aaccaccatgaatggtaggagaaaacaaaactaggacgatttgctttcagccaccagtaagattgaagcttgactttatccagcaattgattaaaagaag 4034566  T
Q  389 cttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaaa 488  Q
    ||||||||| |||||| ||  || |||| |||||||| || |||||||||||||| |||||||||||||| ||||||| |||| ||||| |||| |||||    
T  4034567 cttctttttggtgaaagatctgatcattcctttcaagccaaatcacccacacacatgatagccaaataaggttaagagctgagtgtttgttgtttgaaaa 4034666  T
Q  489 gccgctaaagg 499  Q
     ||| ||||||    
T  4034667 accgataaagg 4034677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 289 - 499
Target Start/End: Original strand, 13089953 - 13090163
Alignment:
Q  289 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaa 388  Q
    ||||||||| ||||||||||||||||||||||||| || || || |||||||| ||||| ||||| ||||| |||||||||| ||||||||||||||||     
T  13089953 aaccaccataaatggtaggagaaaacaaaactaggacgatttgccttcagccaccagtaagattgaagcttgactttatctagcaattgattaaaagaag 13090052  T
Q  389 cttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaaa 488  Q
    ||||||||| |||||| || ||| |||| |||||||| || |||||||||||||| |||||||||||||| ||||||| |||| ||||| |||| |||||    
T  13090053 cttctttttggtgaaagatccgatcattcctttcaagccaaatcacccacacacatgatagccaaataaggttaagagctgagtgtttgttgtttgaaaa 13090152  T
Q  489 gccgctaaagg 499  Q
     ||| ||||||    
T  13090153 accgataaagg 13090163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 288 - 460
Target Start/End: Original strand, 9932271 - 9932443
Alignment:
Q  288 taaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaa 387  Q
    ||||||||| |||||||||||||||||||||||||| || || ||||||||||| ||||| ||||| |||||||||||||||| |||||||||||  |||    
T  9932271 taaccaccaagaatggtaggagaaaacaaaactaggacgattagctttcagccaccagtaagattgaagcttaactttatctagcaattgattaatcgaa 9932370  T
Q  388 acttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagat 460  Q
     ||||| ||| |||||| |  |||||||| |||||||| || ||||||||||||||||||| ||| |||||||    
T  9932371 gcttctgtttggtgaaaaacccgagcattcctttcaagccaaatcacccacacacaagataaccatataagat 9932443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 288 - 448
Target Start/End: Original strand, 25582756 - 25582916
Alignment:
Q  288 taaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaa 387  Q
    ||||||||| |||||||||||||||||||||||||| || || ||||||||||| ||||| ||||| |||||||||||||||| |||||||||||  |||    
T  25582756 taaccaccaagaatggtaggagaaaacaaaactaggacgattagctttcagccaccagtaagattgaagcttaactttatctagcaattgattaatcgaa 25582855  T
Q  388 acttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagata 448  Q
     ||||| ||| |||||| |  |||||||| |||||||| || |||||||||||||||||||    
T  25582856 gcttctgtttggtgaaaaacccgagcattcctttcaagccaaatcacccacacacaagata 25582916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 288 - 460
Target Start/End: Original strand, 13781019 - 13781190
Alignment:
Q  288 taaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaa 387  Q
    ||||||||| ||||||||||||||||||||| |||| || || ||||||||||| ||||| ||||| ||||||||||||| |||||||| | |||  |||    
T  13781019 taaccaccaagaatggtaggagaaaacaaaattaggacgatttgctttcagcca-cagtaagattgaagcttaactttatttaacaattaagtaatcgaa 13781117  T
Q  388 acttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagat 460  Q
     ||||| ||| |||||| |  |||||||| |||||||| || |||| |||||||||||||| ||| |||||||    
T  13781118 gcttctatttggtgaaaaacccgagcattcctttcaagccaaatcatccacacacaagataaccatataagat 13781190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 131 - 184
Target Start/End: Original strand, 13089765 - 13089818
Alignment:
Q  131 gaagaaacaaaaatggattacaatactaaaagtctggagatttcagcacaagga 184  Q
    |||||| | ||||||||||| | |||||||||||||||||||||||||||||||    
T  13089765 gaagaagctaaaatggattatattactaaaagtctggagatttcagcacaagga 13089818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 188
Target Start/End: Complemental strand, 45548000 - 45547944
Alignment:
Q  132 aagaaacaaaaatggattacaatactaaaagtctggagatttcagcacaaggagtgc 188  Q
    ||||||| ||||||||||| | |||| |||| |||||||||||||||||||||||||    
T  45548000 aagaaactaaaatggattaaattactgaaagcctggagatttcagcacaaggagtgc 45547944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 288 - 319
Target Start/End: Original strand, 10230280 - 10230311
Alignment:
Q  288 taaccaccatgaatggtaggagaaaacaaaac 319  Q
    ||||||||||||||||||||||||||||||||    
T  10230280 taaccaccatgaatggtaggagaaaacaaaac 10230311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 188
Target Start/End: Original strand, 4034300 - 4034357
Alignment:
Q  131 gaagaaacaaaaatggattacaatactaaaagtctggagatttcagcacaaggagtgc 188  Q
    |||||| | |||||| |||| | ||||||||||||| |||||| ||||||||||||||    
T  4034300 gaagaagctaaaatgaattatattactaaaagtctgaagattttagcacaaggagtgc 4034357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0300 (Bit Score: 180; Significance: 9e-97; HSPs: 2)
Name: scaffold0300
Description:

Target: scaffold0300; HSP #1
Raw Score: 180; E-Value: 9e-97
Query Start/End: Original strand, 261 - 499
Target Start/End: Complemental strand, 9548 - 9301
Alignment:
Q  261 ctgttacataaatattcctaagcaaggtaa---------ccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgat 351  Q
    ||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  9548 ctgttacataaatattcctaagcaaggtaaagggttcaaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccaccagtatgat 9449  T
Q  352 tggagcttaactttatctaacaattgattaaaagaaacttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagcc 451  Q
    || |||||||||||||||||||||||||||||| || ||||||||| |||||||||||||||||| |||||||| |||||||||||||||||||||||||    
T  9448 tgaagcttaactttatctaacaattgattaaaataagcttctttttggtgaaatatgcgagcattcctttcaagccagatcacccacacacaagatagcc 9349  T
Q  452 aaataagattaagagttgagcgtttgctgttagaaaagccgctaaagg 499  Q
    |||||||||||||||||||||||||||||||||| |||| ||||||||    
T  9348 aaataagattaagagttgagcgtttgctgttagagaagctgctaaagg 9301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0300; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 187
Target Start/End: Complemental strand, 9678 - 9622
Alignment:
Q  131 gaagaaacaaaaatggattacaatactaaaagtctggagatttcagcacaaggagtg 187  Q
    |||||||| ||||||||||| ||||||||||| ||| ||||||||||||||| ||||    
T  9678 gaagaaactaaaatggattaaaatactaaaagcctgaagatttcagcacaagaagtg 9622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 175; Significance: 9e-94; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 175; E-Value: 9e-94
Query Start/End: Original strand, 262 - 499
Target Start/End: Original strand, 4532217 - 4532463
Alignment:
Q  262 tgttacataaatattcctaagcaaggt---------aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgatt 352  Q
    |||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  4532217 tgttacataaatattcctaagcaaggtgaagggttcaaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccaccagtatgatt 4532316  T
Q  353 ggagcttaactttatctaacaattgattaaaagaaacttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagcca 452  Q
    || ||||||||||||||||||||||||||||||||  |||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||| ||    
T  4532317 ggtgcttaactttatctaacaattgattaaaagaagtttctttttggtgaaatatgcgagcattcctttcaagtcagatcacccacacacaagatagtca 4532416  T
Q  453 aataagattaagagttgagcgtttgctgttagaaaagccgctaaagg 499  Q
    ||||||||||||||||||||||||||||||||| ||||||| |||||    
T  4532417 aataagattaagagttgagcgtttgctgttagagaagccgccaaagg 4532463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 290 - 499
Target Start/End: Complemental strand, 33936360 - 33936151
Alignment:
Q  290 accaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaac 389  Q
    ||||||| |||||||| ||||||||||||||| | || |||||||||||  ||||||| ||||| ||||||||||||| || |||||||||||| ||| |    
T  33936360 accaccacgaatggtaagagaaaacaaaactatgacgattcgctttcagttatcagtaagattgaagcttaactttatttagcaattgattaaacgaatc 33936261  T
Q  390 ttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaaag 489  Q
    ||| |||| |||||| || |||||||| |||||||| || ||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||||     
T  33936260 ttcattttggtgaaagatccgagcattcctttcaagccaaatcacccacacacaagatagctaaataagattaagagttgtgtgtttgctgttagaaaaa 33936161  T
Q  490 ccgctaaagg 499  Q
    ||||||||||    
T  33936160 ccgctaaagg 33936151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 289 - 493
Target Start/End: Original strand, 31911724 - 31911928
Alignment:
Q  289 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaa 388  Q
    |||||||| |||||||||||||||||||||||| | || ||| ||||||||||  |||| ||||| |||||||||||||||| |||||||||||| ||||    
T  31911724 aaccaccacgaatggtaggagaaaacaaaactatgacgattcactttcagccactagtaagattgaagcttaactttatctagcaattgattaaacgaaa 31911823  T
Q  389 cttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaaa 488  Q
    ||||||||| |||||| ||  ||||||| |||||||| || |||||||| ||||||||||||||||||||||||| || |||||| ||||| ||||| ||    
T  31911824 cttctttttggtgaaagatctgagcattcctttcaagtcaaatcacccatacacaagatagccaaataagattaaaagctgagcggttgctattagagaa 31911923  T
Q  489 gccgc 493  Q
    |||||    
T  31911924 gccgc 31911928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 103; E-Value: 8e-51
Query Start/End: Original strand, 289 - 499
Target Start/End: Complemental strand, 34549285 - 34549075
Alignment:
Q  289 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaa 388  Q
    ||||||||||||||||||||||||||||||||||| || || || |||||||| ||||| ||||| ||||| |||||||||| ||||||||||||||||     
T  34549285 aaccaccatgaatggtaggagaaaacaaaactaggacgatttgccttcagccaccagtaagattgaagcttgactttatctagcaattgattaaaagaag 34549186  T
Q  389 cttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaaa 488  Q
    ||||||||| || ||| || | | |||| |||||||| || |||||||||||||| |||||||||||||| ||||||| |||| ||||| |||| |||||    
T  34549185 cttctttttggttaaagatcctatcattcctttcaagccatatcacccacacacatgatagccaaataaggttaagagctgagtgtttgttgtttgaaaa 34549086  T
Q  489 gccgctaaagg 499  Q
     ||| ||||||    
T  34549085 accgataaagg 34549075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 289 - 499
Target Start/End: Original strand, 19228065 - 19228274
Alignment:
Q  289 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaa 388  Q
    ||||||||||||||||||||||||||||||||||| || ||  | |||||||| |  || ||||| ||||| |||||||||| ||||||||||||||||     
T  19228065 aaccaccatgaatggtaggagaaaacaaaactaggacgatttaccttcagccaccgataagattgaagcttgactttatctagcaattgattaaaagaag 19228164  T
Q  389 cttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaaa 488  Q
    ||||||||| |||||| || |||||||| |||||||| || |||||||||||||| ||||||||||| || ||||||| |||| ||||| |||| |||||    
T  19228165 cttctttttggtgaaagatccgagcattcctttcaagccaaatcacccacacacatgatagccaaat-aggttaagagctgagtgtttgttgtttgaaaa 19228263  T
Q  489 gccgctaaagg 499  Q
     ||||||||||    
T  19228264 accgctaaagg 19228274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 288 - 460
Target Start/End: Complemental strand, 20505570 - 20505398
Alignment:
Q  288 taaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaa 387  Q
    ||||||||| |||||||||||||||||||||||||| || || ||||||||||| ||||| ||||| |||||||||||||||| |||||||||||  |||    
T  20505570 taaccaccaagaatggtaggagaaaacaaaactaggacgattagctttcagccaccagtaagattgaagcttaactttatctagcaattgattaatcgaa 20505471  T
Q  388 acttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagat 460  Q
     ||||| ||| |||||| |  |||||||| |||||||| || ||||||||||||||||||| ||| |||||||    
T  20505470 gcttctgtttggtgaaaaacccgagcattcctttcaagccaaatcacccacacacaagataaccatataagat 20505398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 88; E-Value: 8e-42
Query Start/End: Original strand, 264 - 398
Target Start/End: Original strand, 51534610 - 51534753
Alignment:
Q  264 ttacataaatattcctaagcaaggtaac---------caccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattgg 354  Q
    |||||||||||||||||||||||||||          ||||||||||||||||||||| |||||||||||||||||||||||||||| || |||||||||    
T  51534610 ttacataaatattcctaagcaaggtaaagggttcaatcaccatgaatggtaggagaaaccaaaactaggtcggttcgctttcagccaccaatatgattgg 51534709  T
Q  355 agcttaactttatctaacaattgattaaaagaaacttcttttta 398  Q
    |||||||||||||||||||||||||||||||||  |||||||||    
T  51534710 agcttaactttatctaacaattgattaaaagaagtttcttttta 51534753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 288 - 448
Target Start/End: Complemental strand, 26676824 - 26676664
Alignment:
Q  288 taaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaa 387  Q
    ||||||||| |||||||||||||||||||||||||| || || ||||||||||| ||||| ||||| |||||||||||||||| |||||||||||  |||    
T  26676824 taaccaccaagaatggtaggagaaaacaaaactaggacgattagctttcagccaccagtaagattgaagcttaactttatctagcaattgattaatcgaa 26676725  T
Q  388 acttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagata 448  Q
     ||||| ||| |||||| |  |||||||| |||||||| || |||||||||||||||||||    
T  26676724 gcttctgtttggtgaaaaacccgagcattcctttcaagccaaatcacccacacacaagata 26676664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 288 - 460
Target Start/End: Original strand, 33676671 - 33676843
Alignment:
Q  288 taaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaa 387  Q
    ||||||||| |||||||||||||||||||||||||| || || |||||||||||  |||| ||||| |||||||||||||||| |||||||||||  |||    
T  33676671 taaccaccaagaatggtaggagaaaacaaaactaggacgatttgctttcagccactagtaagattgaagcttaactttatctagcaattgattaatcgaa 33676770  T
Q  388 acttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagat 460  Q
    |||||| ||| |||||| |   ||||||| |||||||| || ||||| ||||||||||||| ||| |||||||    
T  33676771 acttctgtttggtgaaaaacctgagcattcctttcaagccaaatcactcacacacaagataaccatataagat 33676843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 288 - 438
Target Start/End: Original strand, 28756653 - 28756803
Alignment:
Q  288 taaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaa 387  Q
    ||||||||| ||||||||||||||||||||||||||  | || ||||||||||| ||||| ||||| ||||||||||||||||||||||||||||  |||    
T  28756653 taaccaccaagaatggtaggagaaaacaaaactaggatgatttgctttcagccaccagtaagattgaagcttaactttatctaacaattgattaatcgaa 28756752  T
Q  388 acttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccac 438  Q
     ||||| ||| |||||| |  |||||||| |||||||| || |||||||||    
T  28756753 gcttctgtttggtgaaaaacccgagcattcctttcaagccaaatcacccac 28756803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 289 - 473
Target Start/End: Original strand, 27007563 - 27007747
Alignment:
Q  289 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaa 388  Q
    |||||||| |||||||||||||||||||||||||     |||||||||||| | || |||||||| |  |||||| |||||| |||||||||||| |||     
T  27007563 aaccaccacgaatggtaggagaaaacaaaactagaaaaattcgctttcagctaccaatatgattgaaatttaactctatctagcaattgattaaacgaag 27007662  T
Q  389 cttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgagcg 473  Q
     |||||||| |||||| |  ||| ||||  ||||||| || |||||||||||||||||||| || ||||| |||| || ||||||    
T  27007663 attctttttggtgaaagacccgaacattcatttcaagccaaatcacccacacacaagatagtcatataagtttaaaagctgagcg 27007747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 288 - 460
Target Start/End: Complemental strand, 46731994 - 46731822
Alignment:
Q  288 taaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaa 387  Q
    |||||||||  |||||||||||||||||||| |||| || || |||||||| || ||| | ||||| |||||||||||||||| |||||||||||  |||    
T  46731994 taaccaccaaaaatggtaggagaaaacaaaattaggacgatttgctttcagtcaccagcaagattgaagcttaactttatctagcaattgattaatcgaa 46731895  T
Q  388 acttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagat 460  Q
     ||| | ||| |||||| |  |||  ||| |||||||| || ||||||||||||||||||| ||| |||||||    
T  46731894 gcttttgtttggtgaaaaacccgattattcctttcaagccaaatcacccacacacaagataaccatataagat 46731822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 299 - 493
Target Start/End: Complemental strand, 15759875 - 15759681
Alignment:
Q  299 aatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaacttcttttta 398  Q
    |||||||||| ||| ||||  |||| ||||||||||||||||| ||||||||||| || |||| ||||||||  |||||||| || || || |||||||     
T  15759875 aatggtaggaaaaagcaaaggtaggacggttcgctttcagccaccagtatgattgaagtttaattttatctagtaattgattgaacgagacctctttttg 15759776  T
Q  399 gtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaaagccgc 493  Q
     ||||| |  ||||  |||||||| |  || |||||| |||||||||| ||||| || ||||||| ||||||||| ||||| || ||||| ||||    
T  15759775 atgaaagacccgagtgtttctttctatccaaatcacctacacacaagaaagccatatgagattaaaagttgagcggttgcttttggaaaacccgc 15759681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 289 - 367
Target Start/End: Complemental strand, 52022693 - 52022615
Alignment:
Q  289 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttat 367  Q
    |||||||||||||| |||||||||||||||||||| |  ||||||||| ||| |||||| ||||| |||||||||||||    
T  52022693 aaccaccatgaatgataggagaaaacaaaactaggacaattcgctttcggccgtcagtaagattgaagcttaactttat 52022615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 131 - 188
Target Start/End: Original strand, 4532086 - 4532143
Alignment:
Q  131 gaagaaacaaaaatggattacaatactaaaagtctggagatttcagcacaaggagtgc 188  Q
    |||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  4532086 gaagaaactaaaatggattaaaatactgaaagtctggagatttcagcacaaggagtgc 4532143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 132 - 188
Target Start/End: Complemental strand, 33766456 - 33766400
Alignment:
Q  132 aagaaacaaaaatggattacaatactaaaagtctggagatttcagcacaaggagtgc 188  Q
    ||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  33766456 aagaaactaaaatggattaaaatactgaaagtctggagatttcagcacaaggagtgc 33766400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 131 - 188
Target Start/End: Complemental strand, 34549464 - 34549407
Alignment:
Q  131 gaagaaacaaaaatggattacaatactaaaagtctggagatttcagcacaaggagtgc 188  Q
    |||||| | ||||||||||| | |||||||||||||||||||||||||||||||||||    
T  34549464 gaagaagctaaaatggattatattactaaaagtctggagatttcagcacaaggagtgc 34549407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 131 - 188
Target Start/End: Original strand, 45432373 - 45432430
Alignment:
Q  131 gaagaaacaaaaatggattacaatactaaaagtctggagatttcagcacaaggagtgc 188  Q
    |||||| | ||||||||||| | |||||||||||||||||||||||||||||||||||    
T  45432373 gaagaagctaaaatggattatattactaaaagtctggagatttcagcacaaggagtgc 45432430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 188
Target Start/End: Original strand, 51534478 - 51534534
Alignment:
Q  132 aagaaacaaaaatggattacaatactaaaagtctggagatttcagcacaaggagtgc 188  Q
    ||||||| ||||||||||| |||||  |||| |||||||||||||||||||||||||    
T  51534478 aagaaactaaaatggattaaaataccgaaagcctggagatttcagcacaaggagtgc 51534534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 188
Target Start/End: Original strand, 19227886 - 19227943
Alignment:
Q  131 gaagaaacaaaaatggattacaatactaaaagtctggagatttcagcacaaggagtgc 188  Q
    |||||| | ||||||||||| | |||| |||| |||||||||||||||||||||||||    
T  19227886 gaagaagctaaaatggattatattactgaaagcctggagatttcagcacaaggagtgc 19227943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 188
Target Start/End: Complemental strand, 33936525 - 33936477
Alignment:
Q  140 aaaatggattacaatactaaaagtctggagatttcagcacaaggagtgc 188  Q
    ||||||||||| | |||| |||||||||||||||||| |||||||||||    
T  33936525 aaaatggattatattactgaaagtctggagatttcaggacaaggagtgc 33936477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 99; Significance: 2e-48; HSPs: 2)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 289 - 471
Target Start/End: Complemental strand, 94802 - 94620
Alignment:
Q  289 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaa 388  Q
    ||||||||||||||||||||||||||||||||||| || || || |||||||| ||||| ||||| ||||| |||||||||| ||||||||||||||||     
T  94802 aaccaccatgaatggtaggagaaaacaaaactaggacgatttgccttcagccaccagtaagattgaagcttgactttatctagcaattgattaaaagaag 94703  T
Q  389 cttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgag 471  Q
    ||||||||| |||||| || ||| |||| |||||||| || |||||||||||| | |||||||||||||| ||||||| ||||    
T  94702 cttctttttggtgaaagatccgatcattcctttcaagccaaatcacccacacaaatgatagccaaataaggttaagagctgag 94620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 188
Target Start/End: Complemental strand, 94981 - 94924
Alignment:
Q  131 gaagaaacaaaaatggattacaatactaaaagtctggagatttcagcacaaggagtgc 188  Q
    |||||| | ||||||||||| | || |||||| |||||||||||||||||||||||||    
T  94981 gaagaagctaaaatggattatattattaaaagcctggagatttcagcacaaggagtgc 94924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 96; Significance: 1e-46; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 289 - 495
Target Start/End: Complemental strand, 23722 - 23515
Alignment:
Q  289 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaa-caattgattaaaagaa 387  Q
    |||||||| |||||||||||||||||||||||| | || || |||||||||||  |||| || || |||||||||||||| || |||||||||||| |||    
T  23722 aaccaccacgaatggtaggagaaaacaaaactatgacgatttgctttcagccacgagtaagaatgaagcttaactttatcaaagcaattgattaaacgaa 23623  T
Q  388 acttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaa 487  Q
     ||||||||| |||||| ||  ||||||| |||||||| || |||||||||||||||||||||||||||||||||||||  |||  |||| |||||||||    
T  23622 gcttctttttggtgaaagatttgagcattcctttcaagccaaatcacccacacacaagatagccaaataagattaagagcggagtttttgttgttagaaa 23523  T
Q  488 agccgcta 495  Q
    | ||||||    
T  23522 aaccgcta 23515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 89; Significance: 2e-42; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 288 - 460
Target Start/End: Original strand, 10436606 - 10436778
Alignment:
Q  288 taaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaa 387  Q
    ||||||||| |||||||||||||||||||||||||| || || ||||||||||| ||||| ||||| |||||||||||||||| |||||||||||  |||    
T  10436606 taaccaccaagaatggtaggagaaaacaaaactaggacgattagctttcagccaccagtaagattgaagcttaactttatctagcaattgattaatcgaa 10436705  T
Q  388 acttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagat 460  Q
     ||||| ||| |||||| |  |||||||| |||||||| || ||||||||||||||||||| ||| |||||||    
T  10436706 gcttctgtttggtgaaaaacccgagcattcctttcaagccaaatcacccacacacaagataaccatataagat 10436778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 288 - 460
Target Start/End: Complemental strand, 20406304 - 20406132
Alignment:
Q  288 taaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaa 387  Q
    ||||||||| |||||||||||||||||||||||||| || || |||||||||||  |||| ||||| |||||||||||||||| |||||| ||||  |||    
T  20406304 taaccaccaagaatggtaggagaaaacaaaactaggacgatttgctttcagccactagtaagattgaagcttaactttatctagcaattgcttaatcgaa 20406205  T
Q  388 acttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagat 460  Q
     ||||| ||| |||||| || |||||||| |||||||| || ||||||||||||||||||| ||| |||||||    
T  20406204 gcttctgtttggtgaaaaatccgagcattcctttcaagtcaaatcacccacacacaagataaccatataagat 20406132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 288 - 463
Target Start/End: Complemental strand, 15030006 - 15029831
Alignment:
Q  288 taaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaa 387  Q
    ||||||||||| ||||||||||||| |||||||| |  | |||||||||| ||| || || ||||| |||||||||||||||| |||||||||||  |||    
T  15030006 taaccaccatgtatggtaggagaaaccaaaactatgatgattcgctttcaaccaccaataagattgaagcttaactttatctagcaattgattaatcgaa 15029907  T
Q  388 acttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaa 463  Q
     ||| | ||| |||||| |  | ||||||  ||||||| || ||||||||| || |||||| ||  ||||||||||    
T  15029906 gcttttgtttggtgaaaaacccaagcattcatttcaagccaaatcacccacgcataagataaccttataagattaa 15029831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 325 - 493
Target Start/End: Original strand, 53459119 - 53459287
Alignment:
Q  325 cggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaacttctttttagtgaaatatgcgagcatttctttcaa 424  Q
    ||||||||||||||||| ||||||||||| || |||| ||||||||  |||||||| || ||  | |||||||  ||||| |  ||||  |||||||| |    
T  53459119 cggttcgctttcagccaccagtatgattgaagtttaattttatctagtaattgattgaacgaggcctctttttgatgaaagacccgagtgtttctttcta 53459218  T
Q  425 ggcagatcacccacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaaagccgc 493  Q
      || ||||||||||||||||| || || || ||||||| ||||||||| ||||| || ||||| ||||    
T  53459219 tccaaatcacccacacacaagaaagtcatatgagattaaaagttgagcggttgcttttggaaaacccgc 53459287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0432 (Bit Score: 56; Significance: 9e-23; HSPs: 1)
Name: scaffold0432
Description:

Target: scaffold0432; HSP #1
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 289 - 488
Target Start/End: Complemental strand, 9028 - 8829
Alignment:
Q  289 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaa 388  Q
    ||||||||  |||||||||| ||| |||| ||||| ||||||||||||||||| ||||||||||| || |||| ||||||||  ||||||| ||| ||      
T  9028 aaccaccacaaatggtaggaaaaagcaaagctaggacggttcgctttcagccaccagtatgattgaagtttaattttatctagtaattgatgaaacgagg 8929  T
Q  389 cttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaaa 488  Q
    | ||||||   ||||| |  ||||| |||||||| |  || ||||||||||||||||| ||||| || ||||||| || |||||| ||||| || |||||    
T  8928 cctcttttagatgaaagacccgagcgtttctttctatccaaatcacccacacacaagaaagccatatgagattaaaagctgagcggttgcttttggaaaa 8829  T

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Target: scaffold0037 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 289 - 323
Target Start/End: Complemental strand, 899 - 865
Alignment:
Q  289 aaccaccatgaatggtaggagaaaacaaaactagg 323  Q
    |||||||||||||||||||||||||||||||||||    
T  899 aaccaccatgaatggtaggagaaaacaaaactagg 865  T

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Target: scaffold0037; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 187
Target Start/End: Complemental strand, 1069 - 1022
Alignment:
Q  140 aaaatggattacaatactaaaagtctggagatttcagcacaaggagtg 187  Q
    ||||||||||| | ||| ||||||||||||||||||||| ||||||||    
T  1069 aaaatggattatattacaaaaagtctggagatttcagcataaggagtg 1022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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