View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4618-Insertion-5 (Length: 736)
Name: NF4618-Insertion-5
Description: NF4618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4618-Insertion-5 |
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Alignment Details
Target: chr2 (Bit Score: 177; Significance: 5e-95; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 5e-95
Query Start/End: Original strand, 6 - 235
Target Start/End: Complemental strand, 37306469 - 37306240
Alignment:
| Q |
6 |
caccatagtagatctacattttttcttcctcttctagcttctatctctctttagcaactacccctcctcttggtaagtgggnnnnnnnngtctttgttat |
105 |
Q |
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| T |
37306469 |
caccatagtagatctacattttttcttcctcttctagcttctatctctctttagcaactacccttcctcttggtaagtggaaaaaaaaagtctttgttat |
37306370 |
T |
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| Q |
106 |
cattaattcatttcacatctcattcacaccaatatcattgtttttgtaaaactaaatctgttcacaagnnnnnnncttttaaaaatacttatgtctccgt |
205 |
Q |
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| T |
37306369 |
cattaattcatttcacatctcattcacaccaatatcattgtttttgtaaaactaaatctgttcacaagtttttttcttttaaaaatacttatgtctccgt |
37306270 |
T |
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| Q |
206 |
ccatatagttagggttgctagaatgtcata |
235 |
Q |
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| T |
37306269 |
ccatatagttagggttgctagaatgtcata |
37306240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 467 - 586
Target Start/End: Complemental strand, 37306014 - 37305895
Alignment:
| Q |
467 |
tcatgttattgatgtttttgtttcctttttgaagtggcacattaatctcgttgaaacaccgctaaagctgacagaagaatctaacaaagaattcatcatc |
566 |
Q |
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| T |
37306014 |
tcatgttattgatgtttttgtttcctttttgaagtggcacattaatctcattgaaacaccgctaaagctgacagaagaatctaacaaagaattcatcatc |
37305915 |
T |
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| Q |
567 |
tgaaagccatttaaggatct |
586 |
Q |
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| T |
37305914 |
tgaaagccatttaaggatct |
37305895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 617 - 736
Target Start/End: Complemental strand, 37305864 - 37305747
Alignment:
| Q |
617 |
gattttctagttgaagcttttttgattgtgaaatatgcaagctggtttaatgattccagctagtaacatgcattcaatgatcggaagaaacaacaataac |
716 |
Q |
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| T |
37305864 |
gattttctagttgaagcttttttgattg--aaatatgcaagctggtttaatgattccagctagtaacatgcattcaatgatcggaagaaacaacaataac |
37305767 |
T |
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| Q |
717 |
gttggtgtctttggtttatc |
736 |
Q |
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| T |
37305766 |
gttggtgtctttggtttatc |
37305747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 284 - 373
Target Start/End: Complemental strand, 37306196 - 37306107
Alignment:
| Q |
284 |
gattatgcttgttcttatgctgatttcaaatataacaaaagaatttaacatgcattttaattatgcttaaaaattcttagaagcataaag |
373 |
Q |
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| T |
37306196 |
gattatgcttgttcctatgctgatttcaaatataacaaaagaatttaacatgcattttaattatgcttaaaaattcttagaagcataaag |
37306107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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