View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4618_low_1 (Length: 460)
Name: NF4618_low_1
Description: NF4618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4618_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 403; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 15 - 445
Target Start/End: Complemental strand, 47390915 - 47390485
Alignment:
| Q |
15 |
ctgtgtgactcatttttcacattgaattccatttggttggactttacgtgtagtttacggcttgaaacaagtgggagtttgtgtcctgggccaagccaat |
114 |
Q |
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| T |
47390915 |
ctgtgtgactcatttttcacattgaattccatttggttggactttacgtgtagtttacagcttgaaacaagtgggagtttgtgtcctgggccaagccaat |
47390816 |
T |
|
| Q |
115 |
tcccaaacacggattatttccagtctcacccaaagaaaattacatgtttcataatcagacatcgacatggcctagactagtgtgacacagtttgctattg |
214 |
Q |
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| T |
47390815 |
tcccaaacagggattatttccagtctcacccaaagaaaattacatgtttcataatcagacatcgacatggcctagactagtgtgacactgtttgctattg |
47390716 |
T |
|
| Q |
215 |
tcacattgaaattgatcgttttgtcataaagggattctcagtaattaaatgcatatctaactgggagagattaatatcttatagttcactgtagcatttt |
314 |
Q |
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| T |
47390715 |
tcatattgaaattgatcgttttgtcataaagggattctcagtaattaaatgcatatctaactgggagagattaatatcttatagttcagtgtagcagttt |
47390616 |
T |
|
| Q |
315 |
atggttattagttgaaaaagattacaattttgtgtattatttttcttctttttcgtgcttttaatgcatactggtaatttattaatgaaccatgtatgca |
414 |
Q |
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| T |
47390615 |
atggttattagttgaaaaagattacaattttgtgtattatttttcttctttttcgtgcttttaatgcatactggtaatttactaatgaaccatgtatgca |
47390516 |
T |
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| Q |
415 |
tagcttggagacaaaaaaccgagccattatt |
445 |
Q |
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| T |
47390515 |
tagcttggagacaaaaaaccgagccattatt |
47390485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 16 - 310
Target Start/End: Original strand, 40625208 - 40625488
Alignment:
| Q |
16 |
tgtgtgactcatttttcacattgaattccatttggttggactttacgtgtagtttacggcttgaaacaagtgggagtttgtgtcctgggccaagccaatt |
115 |
Q |
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| T |
40625208 |
tgtgtgactcattttgcacattgaattccatttggttgaa-tttacgtctagtttatggcttgaaacaagtgggagtttgtgtccttggccaagccaatt |
40625306 |
T |
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| Q |
116 |
cccaaacacggattatttcca--gtctcacccaaagaaaattacatgtttcataatcagacatcgacatggcctagactagtgtgacacagtttgctatt |
213 |
Q |
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|||||||| | |||| ||||| ||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||||||| |
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| T |
40625307 |
cccaaacaggaattagttccacagtctcacccaaagaaaattacatgtttcaaaatcagatatcaacatggcctagactagtgtgacacagtttgctatt |
40625406 |
T |
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| Q |
214 |
gtcacattgaaattgatcgttttgtcataaagggattctcagtaattaaatgcatatctaactgggagagattaatatcttatagttcactgtagca |
310 |
Q |
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|||||||||||||||||| ||||||| |||| ||| ||||||||||||||||| |||||||||||||||||||||| ||||||| |
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| T |
40625407 |
gtcacattgaaattgatctttttgtc-------------cagtcattgaatgcatatctaactgg--gagattaatatcttatagttcagtgtagca |
40625488 |
T |
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