View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4618_low_2 (Length: 412)
Name: NF4618_low_2
Description: NF4618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4618_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 384; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 1 - 406
Target Start/End: Original strand, 47390892 - 47391299
Alignment:
| Q |
1 |
caatgtgaaaaatgagtcacacagattatggttgaaacatgttacttttattctgacatgaaacatgcaattccgatcaataaactcattctatgcaaac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47390892 |
caatgtgaaaaatgagtcacacagattatggttgaaacatgttacttttattctgacatgaaacatgcaattccgatcaataaactcattctatgcaaac |
47390991 |
T |
|
| Q |
101 |
agaggcaaaaccatattttcttttcctttttggtggtttgtgtgtggcattgtcaaaa-agatatatatataaataaa-taaggggtgaagagagaacct |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||| |
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| T |
47390992 |
agaggcaaaaccatattttcttttcctttttggtggtttgtgtgtggcattgtcaaaagatatatatatataaataaaataaggggtgaagagagaacct |
47391091 |
T |
|
| Q |
199 |
cagattctttttggcgctgcttattctgagctgacacttctcaatcctctaatatcttctctttcaaatcagaaatctccatttgcagcttagctttttc |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
47391092 |
cagattctttttggcgctgcttattctgagctgacacttctcaatcctctaatatcttccctttcaaatcagaaatctccatttgcagcttagctttttc |
47391191 |
T |
|
| Q |
299 |
tgttttcccaagctagaagtttcttcaaatattttttctccttctttgcgacttccaagcaagctgtcaccgactctgatgcacttaatttggaggcctc |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47391192 |
tgttttcccaagctagaagtttcttcaaatattttttctccttctttgcgacttccaagcaagctgtcaccgactctgatgcacttaatttggaggcctc |
47391291 |
T |
|
| Q |
399 |
catctctg |
406 |
Q |
| |
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|||||||| |
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| T |
47391292 |
catctctg |
47391299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 406
Target Start/End: Complemental strand, 40625230 - 40624831
Alignment:
| Q |
1 |
caatgtgaaaaatgagtcacacagattatggttgaaacatgttacttttattctgacatgaaacatgcaattccgatcaataaactcattctatgcaaac |
100 |
Q |
| |
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||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| ||||| |
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| T |
40625230 |
caatgtgcaaaatgagtcacacacattacggttgaaacatgttacttttattctgacatgaaacgtgcaattccgatcaataaactc-ttctatacaaac |
40625132 |
T |
|
| Q |
101 |
agaggcaaaaccatattttcttttcctttttggtggtttgtgtgtggcattgtcaaaaagatatatatataaataaataaggggtgaagagagaacctca |
200 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||| ||||| |||||||||| | |||||||||| | | |||||||||||||||||||||||||| |
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| T |
40625131 |
agaggcaaaaccatattttcttttcctttgtggtggtaagtgtg--gcattgtcaata-gatatatataaata-aaataaggggtgaagagagaacctca |
40625036 |
T |
|
| Q |
201 |
gattctttttggcgctgcttattctgagctgacacttctcaatcctctaatatcttctctttcaaatcagaaatctccatttgcagcttagctttttctg |
300 |
Q |
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| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| | | |
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| T |
40625035 |
gcttctttttggcgctgcttattctgagctgacacttctcgatcctctaatatcttctctttcaaatcagaaatctccttttgcagcttagctttctgt- |
40624937 |
T |
|
| Q |
301 |
ttttcccaagctagaagtttcttcaaatattttttctccttctttgcgacttccaagcaagctgtcaccgactctgatgcacttaatttggaggcctcca |
400 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
40624936 |
ttttcccaagctagaagtttcttcaagtattttttctccttttttgcaacttccaagcaagctgtcactgactctgatgcacttaatttggaggcctcca |
40624837 |
T |
|
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