View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4619-Insertion-1 (Length: 986)
Name: NF4619-Insertion-1
Description: NF4619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4619-Insertion-1 |
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Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-124; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-124
Query Start/End: Original strand, 686 - 965
Target Start/End: Original strand, 1480255 - 1480537
Alignment:
| Q |
686 |
aattatgttatttaaaaatgaaacaccaaaaatatagttaatatgttacttgaagtagcaattcagaaaaatcttaataaatttgtaaaatatcgcttta |
785 |
Q |
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| T |
1480255 |
aattatgttatttaaaaatgaaacaccaaaaatatagttaatatgttacttgaagtagcaattcagaaaaatcttaataaatttgtaaaatatcgcttaa |
1480354 |
T |
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| Q |
786 |
aa-ttcatgagagaaaactattatcaaacaactatactttgatcatatgcgagtttatgcatatgagcggtgctatatttcgagaaagatggcatcacaa |
884 |
Q |
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| T |
1480355 |
aaattcatgagagacaactattatcaaacaactatactttgatcatatacgagtttatgcatatgagcggtgctatattttaagaaagatggcatcacga |
1480454 |
T |
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| Q |
885 |
aatcttcaagattcaagaattaggagcagccaatcacaacacactgctcg-cacaattc-agaagatgtggcggaaaacaaag |
965 |
Q |
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| T |
1480455 |
aatcttcaagattcaagaattatgagcagccaatcacaacacactactcgtcacaattcaagaagatgtggcggaaaacaaag |
1480537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 183; E-Value: 2e-98
Query Start/End: Original strand, 195 - 429
Target Start/End: Original strand, 1479797 - 1480030
Alignment:
| Q |
195 |
ttacctcgccctatcccgttgacattttcgatgacaatacattcttttatacattttcatataagcttactatgaagtgttcattgttgatgtcccattc |
294 |
Q |
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| T |
1479797 |
ttacctcgccctatcccgttgacattttcggtgacaatacattcttttgtacatttttatataagcttactatgaagtgttcattgttgatgtctcatgc |
1479896 |
T |
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| Q |
295 |
accgacgatcactcatataacttgttggtaataggtgtcaaatctttaattcgtaattttacttctaattagtcttcttgctaatttgaatttggatgtc |
394 |
Q |
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| T |
1479897 |
actgacgatcactcatatagcttg-tggtaatagatgtcaaatctctaattcgtaattttatttttaattagtcttcttgctaatttgaatttggatgtc |
1479995 |
T |
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| Q |
395 |
agttttgctattattaaatgaatgaaagaattttg |
429 |
Q |
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| T |
1479996 |
agttttgctattattaaatgaatgaaagaattttg |
1480030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 134; E-Value: 3e-69
Query Start/End: Original strand, 51 - 196
Target Start/End: Original strand, 1479625 - 1479770
Alignment:
| Q |
51 |
tttatatagtgctcaatatccactttttcatctaatatgagactcttttacccacacttaatataccaacacaattttattaaaaataatagaaaattga |
150 |
Q |
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| T |
1479625 |
tttatatagtgctcaatatccacttttccatctaatatgagactcttttacccacacttaatataccaacacaattttattaaaaataatagaaaattga |
1479724 |
T |
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| Q |
151 |
ttatttgtttatattgatgagatcccctaggagatgagggtacttt |
196 |
Q |
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| T |
1479725 |
ttatttgtttatattgatgaggtcccctcggagatgagggtacttt |
1479770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 116; E-Value: 2e-58
Query Start/End: Original strand, 444 - 563
Target Start/End: Original strand, 1480014 - 1480133
Alignment:
| Q |
444 |
tgaatgaaagaattttggtttacattttaattgactccagttgcaccagtattccgaaataaatacataatgacaaatcacatttcaaaatcgactaaaa |
543 |
Q |
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| T |
1480014 |
tgaatgaaagaattttggtttacattttaattgactccagttgcaccagtattccgaaataaatacataatgacaaatcacatttcaaaatcgactaaaa |
1480113 |
T |
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| Q |
544 |
ttatgtccaatgtcgttgtc |
563 |
Q |
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||||||||||||| |||||| |
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| T |
1480114 |
ttatgtccaatgttgttgtc |
1480133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 52 - 94
Target Start/End: Original strand, 23210891 - 23210933
Alignment:
| Q |
52 |
ttatatagtgctcaatatccactttttcatctaatatgagact |
94 |
Q |
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| T |
23210891 |
ttatatagtgttcaacatccattttttcatctaatatgagact |
23210933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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