View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4619-Insertion-3 (Length: 670)
Name: NF4619-Insertion-3
Description: NF4619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4619-Insertion-3 |
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Alignment Details
Target: chr6 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 8 - 377
Target Start/End: Complemental strand, 5558490 - 5558140
Alignment:
| Q |
8 |
aagaaaacattcaagcaaatgaattagcccaaaatacttatggatataaaatcataagaaaacactttcataagattattgaaggtcaaagagcaatttt |
107 |
Q |
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| T |
5558490 |
aagaaaacattcaagcaaacgaattagcccaaaatactaacggatataaaatcataagaaaacactttcataagattattgaaggtcaaagagcaatttt |
5558391 |
T |
|
| Q |
108 |
ataatgcatttttcgaaacttgaacactaatgcattagaaccatgagattggaggctagaaactgtttctaaacttgaacacaacttgaattagcccaaa |
207 |
Q |
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| T |
5558390 |
ataatgcatttttcgaaacttgaacactaatgcattagaaccatgagattggaggctagaaactgtttctaaacttgaacaca----------------- |
5558308 |
T |
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| Q |
208 |
ataccatgagattagaggctagaaaacacattaagatgtcaagttatcaacatcaacgtctttcaatgctcaagttaatggacaagtcgttgacaagatc |
307 |
Q |
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| T |
5558307 |
--accatgagattagaggctagaaaacacattaagatgtcaagttatcaacatcaacgtctttcaatgctcaagctaatggacaagtcgttgacaagatc |
5558210 |
T |
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| Q |
308 |
ttgattgatgcaattaaaaagcacattaagcaaaagcctcgaaattgacatgaaatcctaagtcaagtat |
377 |
Q |
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| T |
5558209 |
ttgattgatgcaattaaaaagcacattaagcaaaagcctccaaattgacatgaaatcctaagtcaagtat |
5558140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 435 - 653
Target Start/End: Complemental strand, 5558142 - 5557924
Alignment:
| Q |
435 |
tatggttaagatattgtgttgcctattgaattgaatttagtattaaatttaaagttgcagcaacaaaatggcttattagtacaaaattacattaaaaatg |
534 |
Q |
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| T |
5558142 |
tatggttaagatgttgtgttgcctattgaattgaatttagtattaaatttaaagttgcagcaacaaaatggcttgctagtacaaaattacattaaaaatg |
5558043 |
T |
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| Q |
535 |
atacataaccatttacaaagtctaaaagaagaaaagttagtggctttaaacaatatttgaagtactataaactagttattcatgaatataaagtaactta |
634 |
Q |
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| T |
5558042 |
atgcataacaatttacaaagtctaaaagaagaagagttagtggctttaaacaatatttgaagtactataaactagttattcatgaatataaagtaactta |
5557943 |
T |
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| Q |
635 |
gatcaatattaaaaagtat |
653 |
Q |
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| T |
5557942 |
gatcaatattaaaaagtat |
5557924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 22 - 89
Target Start/End: Complemental strand, 32773566 - 32773499
Alignment:
| Q |
22 |
gcaaatgaattagcccaaaatacttatggatataaaatcataagaaaacactttcataagattattga |
89 |
Q |
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||||||||| || |||||||||||| ||||||||||||| |||| ||||| ||| ||||||||||||| |
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| T |
32773566 |
gcaaatgaactatcccaaaatacttttggatataaaatcctaagcaaacattttgataagattattga |
32773499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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