View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4619-Insertion-4 (Length: 537)
Name: NF4619-Insertion-4
Description: NF4619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4619-Insertion-4 |
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| [»] chr5 (1 HSPs) |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 505; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 8 - 537
Target Start/End: Original strand, 29206964 - 29207493
Alignment:
| Q |
8 |
agaacctggtagatgtccgaaccannnnnnncaaagggctttgttccatccagcaatgcatccagtatcttgttgaacatttgtgacacgaactcatcat |
107 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29206964 |
agaacctggtagatgtccgaaccatttttttcaaagggctttgttccatccagcaatgcatccagtatcttgttgaacatttgtgacacgaactcatcat |
29207063 |
T |
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| Q |
108 |
atcctctacctgtaagagaagtcgctgtaaagatgtggttagcagtagcttacgattgaacactatttgttagaacaagctagacaaatatgagaaaaca |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29207064 |
atcctctacctgtaagagaagtcgctgtaaagatgtggttagcagtagcttacgattgaacactatttgttagaacaagctagacaaatatgagaaaaca |
29207163 |
T |
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| Q |
208 |
tgcttttgttaaattgtatagaaacttctttaattttgcagtggcatacaatcctcttttcacttgatacattatgtttcctgtcatgttgattatagct |
307 |
Q |
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| T |
29207164 |
tgcttttgttaaattgtatagaaacttctttaattttgcagtggcatacaatcctcttttcacttgatacattatgtttcctgtcatgttgattatagct |
29207263 |
T |
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| Q |
308 |
gacagtgaagttctctctcagattactgatcgaaaacccagtccaaagattaggtgtaacaggagcaacagaagtgagttattcagtgccttttgaaacg |
407 |
Q |
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| T |
29207264 |
gacagtgaagttctctttcagattactgatcgaaaacccagtccaaagattaggtgtaacaggagcaacagaagtgagttattcagtgccttttgaaacg |
29207363 |
T |
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| Q |
408 |
gagtactcgcaaattatggtattacatatacacaatcaaataatatattattttgtgcaggttaaacgccatgctttcttcaaggatgttaattgggata |
507 |
Q |
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| T |
29207364 |
gagtactcgcaaattatggtattacatatacacaatcaaataatatattattttgtgcaggttaaacgccatgctttcttcaaggatgttaattgggata |
29207463 |
T |
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| Q |
508 |
cgctagcaaggcagaaggtcgtcattttaa |
537 |
Q |
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| T |
29207464 |
cgctagcaaggcagaaggtcgtcattttaa |
29207493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 204 - 537
Target Start/End: Complemental strand, 12644641 - 12644308
Alignment:
| Q |
204 |
aacatgcttttgttaaattgtatagaaacttctttaattttgcagtggcatacaatcctcttttcacttgatacattatgtttcctgtcatgttgattat |
303 |
Q |
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| T |
12644641 |
aacatgcttttgttaaattgtatagaaacttcttcaatttagcagtggcttacaatcctcttttcacttgatacattatgtttcctgtcatgttgattat |
12644542 |
T |
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| Q |
304 |
agctgacagtgaagttctctctcagattactgatcgaaaacccagtccaaagattaggtgtaacaggagcaacagaagtgagttattcagtgccttttga |
403 |
Q |
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| T |
12644541 |
agctgacagtgaagttctctttcagattactgatcgaaaacccagtccaaagattaggtgtaacaggagctacagaagtgagttattcagtgccttttga |
12644442 |
T |
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| Q |
404 |
aacggagtactcgcaaattatggtattacatatacacaatcaaataatatattattttgtgcaggttaaacgccatgctttcttcaaggatgttaattgg |
503 |
Q |
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| T |
12644441 |
aacggagtactcacaaattatggtattacatatacacaatcaaataatatattattttgtgcaggttaaacgccatgctttcttcaaggatgttaattgg |
12644342 |
T |
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| Q |
504 |
gatacgctagcaaggcagaaggtcgtcattttaa |
537 |
Q |
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| T |
12644341 |
gatacgctagcaaggcagaaggtcgtcattttaa |
12644308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 8 - 227
Target Start/End: Complemental strand, 12644897 - 12644678
Alignment:
| Q |
8 |
agaacctggtagatgtccgaaccannnnnnncaaagggctttgttccatccagcaatgcatccagtatcttgttgaacatttgtgacacgaactcatcat |
107 |
Q |
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| T |
12644897 |
agaatctggtagatgtccgaaccatttttttcaaagggctttgttccatccagcaatgcatccagtatcttgttgaacatttgtgacacgaactcatcat |
12644798 |
T |
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| Q |
108 |
atcctctacctgtaagagaagtcgctgtaaagatgtggttagcagtagcttacgattgaacactatttgttagaacaagctagacaaatatgagaaaaca |
207 |
Q |
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| T |
12644797 |
atcctctacctgtaagagaagtcgctgtaaagatgtggttagcagtagcttacgattgaacactatttgttagaacaagctagacaaatatgagaaaaca |
12644698 |
T |
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| Q |
208 |
tgcttttgttaaattgtata |
227 |
Q |
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|||||||||||||||||||| |
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| T |
12644697 |
tgcttttgttaaattgtata |
12644678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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