View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4619-Insertion-7 (Length: 341)
Name: NF4619-Insertion-7
Description: NF4619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4619-Insertion-7 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 137; Significance: 2e-71; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 184 - 341
Target Start/End: Original strand, 12636798 - 12636955
Alignment:
| Q |
184 |
gaagaatcatttccactaactgtaaattctttttgaaatttattatttgttgtcaaacaaagtttattatttgttttagagccattctgaatgttgaaaa |
283 |
Q |
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| T |
12636798 |
gaagaatcatttccactaactgtaaattctttttgaaatttattatttgttgtcaaacaaagtttattatttgttttagagccattctgaatgttgaaaa |
12636897 |
T |
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| Q |
284 |
tatgattgaacaaaactcccattaaactaannnnnnnatttggtacagaaactcataa |
341 |
Q |
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| T |
12636898 |
tatgattgaacaaaactcccattaaactaatttttttatttggtacagaaactcataa |
12636955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 8 - 117
Target Start/End: Original strand, 12636622 - 12636731
Alignment:
| Q |
8 |
cgtttttcctatttgctcatagtaattatttatgtgatatcacattcattttcaaatttggaatacctctaaaatattaccaatattaaattccttatat |
107 |
Q |
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| T |
12636622 |
cgtttttcctatttgctcatagtaattatttatgtgatatcacattcattttcaaatttggaatacctctaaaatattaccaatattaaattccttatat |
12636721 |
T |
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| Q |
108 |
ttttcagagg |
117 |
Q |
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| T |
12636722 |
tttttagagg |
12636731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 254 - 311
Target Start/End: Complemental strand, 16784943 - 16784886
Alignment:
| Q |
254 |
ttgttttagagccattctgaatgttgaaaatatgattgaacaaaactcccattaaact |
311 |
Q |
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| T |
16784943 |
ttgttttagagcctttctgaagattgaaaatatgattgaacaaaactcccattaaact |
16784886 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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