View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4619_high_3 (Length: 243)

Name: NF4619_high_3
Description: NF4619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4619_high_3
NF4619_high_3
[»] chr4 (12 HSPs)
chr4 (17-136)||(47119082-47119201)
chr4 (21-70)||(44863103-44863152)
chr4 (21-69)||(44797763-44797811)
chr4 (22-69)||(17204009-17204056)
chr4 (32-69)||(43505829-43505866)
chr4 (21-69)||(25904365-25904413)
chr4 (25-69)||(49202527-49202571)
chr4 (22-69)||(45935365-45935412)
chr4 (24-69)||(42404136-42404181)
chr4 (21-69)||(27034-27082)
chr4 (21-69)||(50662873-50662921)
chr4 (21-69)||(50681240-50681288)
[»] chr5 (12 HSPs)
chr5 (21-69)||(32372495-32372543)
chr5 (21-69)||(24030553-24030601)
chr5 (21-69)||(40426633-40426681)
chr5 (21-79)||(28776846-28776904)
chr5 (20-53)||(36797226-36797259)
chr5 (21-69)||(3520302-3520350)
chr5 (21-78)||(12433521-12433578)
chr5 (24-69)||(42100200-42100245)
chr5 (21-69)||(12857856-12857904)
chr5 (21-69)||(13697910-13697958)
chr5 (21-69)||(32703589-32703637)
chr5 (21-69)||(40120006-40120054)
[»] chr7 (11 HSPs)
chr7 (21-74)||(18865201-18865254)
chr7 (21-69)||(36517486-36517534)
chr7 (21-69)||(46139823-46139871)
chr7 (31-69)||(22283867-22283905)
chr7 (24-69)||(11619340-11619385)
chr7 (25-66)||(33552966-33553007)
chr7 (24-69)||(45004637-45004682)
chr7 (21-69)||(19718888-19718936)
chr7 (29-69)||(22296364-22296404)
chr7 (21-69)||(27863848-27863896)
chr7 (21-69)||(33128628-33128676)
[»] chr3 (12 HSPs)
chr3 (21-69)||(47132248-47132296)
chr3 (27-69)||(849553-849595)
chr3 (24-69)||(3845716-3845761)
chr3 (32-69)||(42747913-42747950)
chr3 (28-69)||(44747550-44747591)
chr3 (25-69)||(5456741-5456785)
chr3 (25-69)||(26990635-26990679)
chr3 (21-69)||(30956777-30956825)
chr3 (21-69)||(30972589-30972637)
chr3 (21-69)||(35959607-35959655)
chr3 (21-69)||(46886838-46886886)
chr3 (21-65)||(47249609-47249653)
[»] chr1 (15 HSPs)
chr1 (23-69)||(41195347-41195393)
chr1 (24-69)||(46423151-46423196)
chr1 (21-69)||(3234174-3234222)
chr1 (21-69)||(27820481-27820529)
chr1 (25-69)||(45855732-45855776)
chr1 (21-69)||(47498984-47499032)
chr1 (22-69)||(17727247-17727294)
chr1 (24-67)||(27970417-27970460)
chr1 (21-69)||(35058897-35058946)
chr1 (24-69)||(49938619-49938664)
chr1 (21-69)||(1829095-1829143)
chr1 (21-69)||(22343959-22344007)
chr1 (21-69)||(37473270-37473318)
chr1 (21-69)||(38247325-38247372)
chr1 (21-69)||(51688576-51688624)
[»] chr8 (8 HSPs)
chr8 (21-66)||(9956953-9956998)
chr8 (21-69)||(14956446-14956494)
chr8 (33-80)||(25930702-25930749)
chr8 (23-69)||(40981001-40981047)
chr8 (21-69)||(41589561-41589612)
chr8 (21-57)||(1112968-1113004)
chr8 (21-69)||(29819031-29819079)
chr8 (21-69)||(36963496-36963544)
[»] chr6 (3 HSPs)
chr6 (24-69)||(6538388-6538433)
chr6 (21-69)||(658586-658634)
chr6 (21-69)||(35069433-35069481)
[»] chr2 (15 HSPs)
chr2 (20-69)||(28792350-28792399)
chr2 (21-70)||(43570296-43570345)
chr2 (21-67)||(26626759-26626805)
chr2 (13-63)||(27317254-27317304)
chr2 (21-67)||(27695738-27695784)
chr2 (21-69)||(41880643-41880692)
chr2 (21-69)||(2416194-2416242)
chr2 (21-69)||(15757817-15757865)
chr2 (25-69)||(26143785-26143829)
chr2 (21-69)||(28330450-28330497)
chr2 (20-64)||(32592463-32592507)
chr2 (21-69)||(40682514-40682562)
chr2 (33-69)||(40835435-40835471)
chr2 (21-69)||(41407172-41407220)
chr2 (21-69)||(42659302-42659350)
[»] scaffold0018 (1 HSPs)
scaffold0018 (24-69)||(157978-158023)
[»] scaffold0699 (1 HSPs)
scaffold0699 (21-69)||(6785-6833)


Alignment Details
Target: chr4 (Bit Score: 116; Significance: 4e-59; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 17 - 136
Target Start/End: Original strand, 47119082 - 47119201
Alignment:
Q  17 ataaatgataagtgcttgtgctataagttgcaaataagttttttatccaaacacaacctaaattaattaggtcatgaaaaattgaaatgaagtgtggatt 116  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47119082 ataaatgataagtgcttgtgctataagttgcaaataagttgtttatccaaacacaacctaaattaattaggtcatgaaaaattgaaatgaagtgtggatt 47119181  T
Q  117 attatgtatttgtcttgtca 136  Q
    ||||||||||||||||||||    
T  47119182 attatgtatttgtcttgtca 47119201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 44863103 - 44863152
Alignment:
Q  21 atgataagtgcttgtgctataagttgcaaataagttttttatccaaacac 70  Q
    |||| |||||||||||||||||| |||||||||||| |||||||||||||    
T  44863103 atgacaagtgcttgtgctataagctgcaaataagttgtttatccaaacac 44863152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 69
Target Start/End: Complemental strand, 44797811 - 44797763
Alignment:
Q  21 atgataagtgcttgtgctataagttgcaaataagttttttatccaaaca 69  Q
    |||||||  ||||||||||||||||||||||||||| ||||||||||||    
T  44797811 atgataatcgcttgtgctataagttgcaaataagttgtttatccaaaca 44797763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 69
Target Start/End: Complemental strand, 17204056 - 17204009
Alignment:
Q  22 tgataagtgcttgtgctataagttgcaaataagttttttatccaaaca 69  Q
    |||||||||||||| ||||||| |||||||||||| ||||||||||||    
T  17204056 tgataagtgcttgttctataagctgcaaataagttgtttatccaaaca 17204009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 69
Target Start/End: Complemental strand, 43505866 - 43505829
Alignment:
Q  32 ttgtgctataagttgcaaataagttttttatccaaaca 69  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  43505866 ttgtgctataagttgcaaataagttgtttatccaaaca 43505829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 69
Target Start/End: Original strand, 25904365 - 25904413
Alignment:
Q  21 atgataagtgcttgtgctataagttgcaaataagttttttatccaaaca 69  Q
    ||||||||||||||||||||||  ||||||| |||| ||||||||||||    
T  25904365 atgataagtgcttgtgctataatctgcaaatgagttgtttatccaaaca 25904413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 69
Target Start/End: Complemental strand, 49202571 - 49202527
Alignment:
Q  25 taagtgcttgtgctataagttgcaaataagttttttatccaaaca 69  Q
    ||||||||||| ||||||| |||||||||||| ||||||||||||    
T  49202571 taagtgcttgtactataagctgcaaataagttgtttatccaaaca 49202527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 69
Target Start/End: Original strand, 45935365 - 45935412
Alignment:
Q  22 tgataagtgcttgtgctataagttgcaaataagttttttatccaaaca 69  Q
    ||||||| ||||| |||||||| |||||||||||| ||||||||||||    
T  45935365 tgataagcgcttgagctataagctgcaaataagttgtttatccaaaca 45935412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 69
Target Start/End: Original strand, 42404136 - 42404181
Alignment:
Q  24 ataagtgcttgtgctataagttgcaaataagttttttatccaaaca 69  Q
    |||||||||||||||||||| |||||||||| | || |||||||||    
T  42404136 ataagtgcttgtgctataaggtgcaaataagctattcatccaaaca 42404181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 69
Target Start/End: Original strand, 27034 - 27082
Alignment:
Q  21 atgataagtgcttgtgctataagttgcaaataagttttttatccaaaca 69  Q
    |||||||| |||||||||||||| |||||| ||| | ||||||||||||    
T  27034 atgataagcgcttgtgctataagctgcaaacaagatgtttatccaaaca 27082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 69
Target Start/End: Original strand, 50662873 - 50662921
Alignment:
Q  21 atgataagtgcttgtgctataagttgcaaataagttttttatccaaaca 69  Q
    ||||||||  |||||| |||||| |||||||||||| ||||||||||||    
T  50662873 atgataagctcttgtgatataagctgcaaataagttgtttatccaaaca 50662921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 69
Target Start/End: Original strand, 50681240 - 50681288
Alignment:
Q  21 atgataagtgcttgtgctataagttgcaaataagttttttatccaaaca 69  Q
    ||||||||| ||||||||||||| |  ||||||||| ||||||||||||    
T  50681240 atgataagttcttgtgctataagctataaataagttgtttatccaaaca 50681288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 69
Target Start/End: Complemental strand, 32372543 - 32372495
Alignment:
Q  21 atgataagtgcttgtgctataagttgcaaataagttttttatccaaaca 69  Q
    ||||||||||||||||||||||| |||||||||||| ||||||||||||    
T  32372543 atgataagtgcttgtgctataagctgcaaataagttgtttatccaaaca 32372495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 69
Target Start/End: Original strand, 24030553 - 24030601
Alignment:
Q  21 atgataagtgcttgtgctataagttgcaaataagttttttatccaaaca 69  Q
    ||||||||||||||||||||||| |||||||||| | ||||||||||||    
T  24030553 atgataagtgcttgtgctataagctgcaaataagctgtttatccaaaca 24030601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 69
Target Start/End: Complemental strand, 40426681 - 40426633
Alignment:
Q  21 atgataagtgcttgtgctataagttgcaaataagttttttatccaaaca 69  Q
    ||||||||||||||||||||||| ||||||| |||| ||||||||||||    
T  40426681 atgataagtgcttgtgctataagctgcaaatgagttgtttatccaaaca 40426633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 21 - 79
Target Start/End: Complemental strand, 28776904 - 28776846
Alignment:
Q  21 atgataagtgcttgtgctataagttgcaaataagttttttatccaaacacaacctaaat 79  Q
    |||||||||||||  |||||||| |||||||||||| |||||||||||| | |||||||    
T  28776904 atgataagtgcttaggctataagctgcaaataagttgtttatccaaacagagcctaaat 28776846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 53
Target Start/End: Original strand, 36797226 - 36797259
Alignment:
Q  20 aatgataagtgcttgtgctataagttgcaaataa 53  Q
    ||||||||||||||||||||||||||||||||||    
T  36797226 aatgataagtgcttgtgctataagttgcaaataa 36797259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 69
Target Start/End: Complemental strand, 3520350 - 3520302
Alignment:
Q  21 atgataagtgcttgtgctataagttgcaaataagttttttatccaaaca 69  Q
    |||| |||||||||||||||||| || ||||||||| ||||||||||||    
T  3520350 atgacaagtgcttgtgctataagctgaaaataagttgtttatccaaaca 3520302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 12433521 - 12433578
Alignment:
Q  21 atgataagtgcttgtgctataagttgcaaataagttttttatccaaacacaacctaaa 78  Q
    |||||||  ||||||| |||||| |||||||||||| |||||||||||| | ||||||    
T  12433521 atgataaacgcttgtgttataagctgcaaataagttgtttatccaaacagatcctaaa 12433578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 69
Target Start/End: Complemental strand, 42100245 - 42100200
Alignment:
Q  24 ataagtgcttgtgctataagttgcaaataagttttttatccaaaca 69  Q
    ||||| ||||||| |||||| |||||||||||| ||||||||||||    
T  42100245 ataagcgcttgtgatataagctgcaaataagttatttatccaaaca 42100200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 69
Target Start/End: Original strand, 12857856 - 12857904
Alignment:
Q  21 atgataagtgcttgtgctataagttgcaaataagttttttatccaaaca 69  Q
    |||||| ||| |||||| ||||||| |||||||||| ||||||||||||    
T  12857856 atgatacgtgtttgtgcaataagttacaaataagttgtttatccaaaca 12857904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 69
Target Start/End: Original strand, 13697910 - 13697958
Alignment:
Q  21 atgataagtgcttgtgctataagttgcaaataagttttttatccaaaca 69  Q
    ||||||| ||||| || |||||| |||||||||||| ||||||||||||    
T  13697910 atgataaatgcttatgttataagctgcaaataagttgtttatccaaaca 13697958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 69
Target Start/End: Original strand, 32703589 - 32703637
Alignment:
Q  21 atgataagtgcttgtgctataagttgcaaataagttttttatccaaaca 69  Q
    ||||||| ||||||||||||||| |||||||||||| ||| || |||||    
T  32703589 atgataaatgcttgtgctataagctgcaaataagttgtttttctaaaca 32703637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 69
Target Start/End: Original strand, 40120006 - 40120054
Alignment:
Q  21 atgataagtgcttgtgctataagttgcaaataagttttttatccaaaca 69  Q
    ||||||| |||| |||||||||||| |||||||||| ||| ||||||||    
T  40120006 atgataaatgctagtgctataagtttcaaataagttgtttgtccaaaca 40120054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 74
Target Start/End: Original strand, 18865201 - 18865254
Alignment:
Q  21 atgataagtgcttgtgctataagttgcaaataagttttttatccaaacacaacc 74  Q
    |||||||| | |||||||||||| |||||||||||| |||||||||||||||||    
T  18865201 atgataagcgtttgtgctataagctgcaaataagttgtttatccaaacacaacc 18865254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 69
Target Start/End: Complemental strand, 36517534 - 36517486
Alignment:
Q  21 atgataagtgcttgtgctataagttgcaaataagttttttatccaaaca 69  Q
    |||||||||||| ||| ||||||||||||||||||| ||||| ||||||    
T  36517534 atgataagtgctagtgttataagttgcaaataagttgtttattcaaaca 36517486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 69
Target Start/End: Complemental strand, 46139871 - 46139823
Alignment:
Q  21 atgataagtgcttgtgctataagttgcaaataagttttttatccaaaca 69  Q
    |||||||||||||||| |||||| |||||||||||| |||| |||||||    
T  46139871 atgataagtgcttgtgttataagctgcaaataagttgtttaaccaaaca 46139823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 69
Target Start/End: Original strand, 22283867 - 22283905
Alignment:
Q  31 cttgtgctataagttgcaaataagttttttatccaaaca 69  Q
    |||||||||||||||||| ||||||| ||||||||||||    
T  22283867 cttgtgctataagttgcacataagttgtttatccaaaca 22283905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 69
Target Start/End: Original strand, 11619340 - 11619385
Alignment:
Q  24 ataagtgcttgtgctataagttgcaaataagttttttatccaaaca 69  Q
    |||||||||||||| ||||  |||||||||||| ||||||||||||    
T  11619340 ataagtgcttgtgcaataatctgcaaataagttgtttatccaaaca 11619385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 33552966 - 33553007
Alignment:
Q  25 taagtgcttgtgctataagttgcaaataagttttttatccaa 66  Q
    ||||||||||||| ||||| |||||||||||| |||||||||    
T  33552966 taagtgcttgtgcaataagctgcaaataagttgtttatccaa 33553007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 69
Target Start/End: Complemental strand, 45004682 - 45004637
Alignment:
Q  24 ataagtgcttgtgctataagttgcaaataagttttttatccaaaca 69  Q
    |||| ||||||||||||||  |||||||||||| ||||||||||||    
T  45004682 ataattgcttgtgctataaactgcaaataagttatttatccaaaca 45004637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 69
Target Start/End: Complemental strand, 19718936 - 19718888
Alignment:
Q  21 atgataagtgcttgtgctataagttgcaaataagttttttatccaaaca 69  Q
    |||||||||||||||| |||||| ||||| ||||||| | |||||||||    
T  19718936 atgataagtgcttgtgttataagctgcaattaagtttctcatccaaaca 19718888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 69
Target Start/End: Original strand, 22296364 - 22296404
Alignment:
Q  29 tgcttgtgctataagttgcaaataagttttttatccaaaca 69  Q
    ||||||||||||||| |||||||||||| |||||| |||||    
T  22296364 tgcttgtgctataagctgcaaataagttgtttatctaaaca 22296404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 69
Target Start/End: Original strand, 27863848 - 27863896
Alignment:
Q  21 atgataagtgcttgtgctataagttgcaaataagttttttatccaaaca 69  Q
    ||||||||  ||||||||||||| | |||||||||| ||||||||||||    
T  27863848 atgataagcacttgtgctataagctacaaataagttgtttatccaaaca 27863896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 69
Target Start/End: Complemental strand, 33128676 - 33128628
Alignment:
Q  21 atgataagtgcttgtgctataagttgcaaataagttttttatccaaaca 69  Q
    |||||||||| ||||||| |||| |||||||||| | ||||||||||||    
T  33128676 atgataagtgtttgtgctgtaagctgcaaataagctgtttatccaaaca 33128628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 69
Target Start/End: Complemental strand, 47132296 - 47132248
Alignment:
Q  21 atgataagtgcttgtgctataagttgcaaataagttttttatccaaaca 69  Q
    ||||||||||||||||||||||| || ||||||||| ||||||||||||    
T  47132296 atgataagtgcttgtgctataaggtgaaaataagttgtttatccaaaca 47132248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 69
Target Start/End: Complemental strand, 849595 - 849553
Alignment:
Q  27 agtgcttgtgctataagttgcaaataagttttttatccaaaca 69  Q
    |||| |||||||||||| |||||||||||| ||||||||||||    
T  849595 agtgtttgtgctataagctgcaaataagttgtttatccaaaca 849553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 69
Target Start/End: Original strand, 3845716 - 3845761
Alignment:
Q  24 ataagtgcttgtgctataagttgcaaataagttttttatccaaaca 69  Q
    ||||||||||||||||| |  |||||||||||| ||||||||||||    
T  3845716 ataagtgcttgtgctatgaactgcaaataagttgtttatccaaaca 3845761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 69
Target Start/End: Original strand, 42747913 - 42747950
Alignment:
Q  32 ttgtgctataagttgcaaataagttttttatccaaaca 69  Q
    ||||||||||||||||||||||| | ||||||||||||    
T  42747913 ttgtgctataagttgcaaataagctgtttatccaaaca 42747950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 69
Target Start/End: Original strand, 44747550 - 44747591
Alignment:
Q  28 gtgcttgtgctataagttgcaaataagttttttatccaaaca 69  Q
    ||||||||| ||||||||||||||||| | ||||||||||||    
T  44747550 gtgcttgtgttataagttgcaaataagctatttatccaaaca 44747591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 69
Target Start/End: Complemental strand, 5456785 - 5456741
Alignment:
Q  25 taagtgcttgtgctataagttgcaaataagttttttatccaaaca 69  Q
    ||||||||| ||||||||| ||||||||||||  |||||||||||    
T  5456785 taagtgcttatgctataagctgcaaataagttagttatccaaaca 5456741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 69
Target Start/End: Original strand, 26990635 - 26990679
Alignment:
Q  25 taagtgcttgtgctataagttgcaaataagttttttatccaaaca 69  Q
    |||||||||||| ||||||||||| ||||||| || |||||||||    
T  26990635 taagtgcttgtgttataagttgcatataagttgttgatccaaaca 26990679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 69
Target Start/End: Original strand, 30956777 - 30956825
Alignment:
Q  21 atgataagtgcttgtgctataagttgcaaataagttttttatccaaaca 69  Q
    ||||||||  ||||||||||||| |||||||||| | ||||||||||||    
T  30956777 atgataagcccttgtgctataagctgcaaataagctgtttatccaaaca 30956825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 69
Target Start/End: Original strand, 30972589 - 30972637
Alignment:
Q  21 atgataagtgcttgtgctataagttgcaaataagttttttatccaaaca 69  Q
    ||||||||  ||||||||||||| |||||||||| | ||||||||||||    
T  30972589 atgataagcccttgtgctataagctgcaaataagctgtttatccaaaca 30972637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 69
Target Start/End: Original strand, 35959607 - 35959655
Alignment:
Q  21 atgataagtgcttgtgctataagttgcaaataagttttttatccaaaca 69  Q
    |||||||| ||||||| |||||| |||||||||| | ||||||||||||    
T  35959607 atgataagagcttgtgatataagctgcaaataagctgtttatccaaaca 35959655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 69
Target Start/End: Original strand, 46886838 - 46886886
Alignment:
Q  21 atgataagtgcttgtgctataagttgcaaataagttttttatccaaaca 69  Q
    ||||||||  ||| ||||||||| |||||||||||| ||||||||||||    
T  46886838 atgataagcacttatgctataagctgcaaataagttgtttatccaaaca 46886886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 65
Target Start/End: Original strand, 47249609 - 47249653
Alignment:
Q  21 atgataagtgcttgtgctataagttgcaaataagttttttatcca 65  Q
    |||||||||||||||| |||||| |||||||||| | ||||||||    
T  47249609 atgataagtgcttgtgttataagctgcaaataagctatttatcca 47249653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 23 - 69
Target Start/End: Original strand, 41195347 - 41195393
Alignment:
Q  23 gataagtgcttgtgctataagttgcaaataagttttttatccaaaca 69  Q
    |||||| |||||||||||||| |||||||||||| ||||||||||||    
T  41195347 gataagcgcttgtgctataagctgcaaataagttatttatccaaaca 41195393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 69
Target Start/End: Complemental strand, 46423196 - 46423151
Alignment:
Q  24 ataagtgcttgtgctataagttgcaaataagttttttatccaaaca 69  Q
    ||||||||||||| |||||| |||||||||||| ||||||||||||    
T  46423196 ataagtgcttgtgttataagctgcaaataagttgtttatccaaaca 46423151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 69
Target Start/End: Original strand, 3234174 - 3234222
Alignment:
Q  21 atgataagtgcttgtgctataagttgcaaataagttttttatccaaaca 69  Q
    |||||||| ||||||||||||||||||||| |||||  |||||||||||    
T  3234174 atgataagcgcttgtgctataagttgcaaacaagttagttatccaaaca 3234222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 69
Target Start/End: Original strand, 27820481 - 27820529
Alignment:
Q  21 atgataagtgcttgtgctataagttgcaaataagttttttatccaaaca 69  Q
    |||||||| |||| ||||||||| |||||||||||| ||||||||||||    
T  27820481 atgataagcgcttatgctataagctgcaaataagttgtttatccaaaca 27820529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 69
Target Start/End: Complemental strand, 45855776 - 45855732
Alignment:
Q  25 taagtgcttgtgctataagttgcaaataagttttttatccaaaca 69  Q
    ||||||||||||||||||| ||||||||||||  |||||||||||    
T  45855776 taagtgcttgtgctataagctgcaaataagttggttatccaaaca 45855732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 69
Target Start/End: Original strand, 47498984 - 47499032
Alignment:
Q  21 atgataagtgcttgtgctataagttgcaaataagttttttatccaaaca 69  Q
    ||||||||  ||||||||||||| |||||||||||| ||||||||||||    
T  47498984 atgataagcacttgtgctataagctgcaaataagttgtttatccaaaca 47499032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 69
Target Start/End: Original strand, 17727247 - 17727294
Alignment:
Q  22 tgataagtgcttgtgctataagttgcaaataagttttttatccaaaca 69  Q
    |||||||||||||||||||||| | || ||||||| ||||||||||||    
T  17727247 tgataagtgcttgtgctataagctacacataagttgtttatccaaaca 17727294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 67
Target Start/End: Original strand, 27970417 - 27970460
Alignment:
Q  24 ataagtgcttgtgctataagttgcaaataagttttttatccaaa 67  Q
    |||||||||| ||||||||| |||||||||||| ||||||||||    
T  27970417 ataagtgcttctgctataagctgcaaataagttgtttatccaaa 27970460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 69
Target Start/End: Original strand, 35058897 - 35058946
Alignment:
Q  21 atgataagtgcttgtgctataagttgc-aaataagttttttatccaaaca 69  Q
    ||||||||||||| ||||||||||||| ||||||| | ||||||||||||    
T  35058897 atgataagtgcttatgctataagttgcaaaataagctgtttatccaaaca 35058946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 69
Target Start/End: Complemental strand, 49938664 - 49938619
Alignment:
Q  24 ataagtgcttgtgctataagttgcaaataagttttttatccaaaca 69  Q
    ||||| |||||||||||||| |||| ||||| ||||||||||||||    
T  49938664 ataagcgcttgtgctataagctgcagataagctttttatccaaaca 49938619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 69
Target Start/End: Original strand, 1829095 - 1829143
Alignment:
Q  21 atgataagtgcttgtgctataagttgcaaataagttttttatccaaaca 69  Q
    |||||||||| || ||||||| ||| |||||||||| ||||||||||||    
T  1829095 atgataagtgtttatgctataggtttcaaataagttgtttatccaaaca 1829143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 69
Target Start/End: Complemental strand, 22344007 - 22343959
Alignment:
Q  21 atgataagtgcttgtgctataagttgcaaataagttttttatccaaaca 69  Q
    |||||||| ||||||||  |||||||||||||||||  |||||||||||    
T  22344007 atgataagcgcttgtgcggtaagttgcaaataagttgattatccaaaca 22343959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 69
Target Start/End: Complemental strand, 37473318 - 37473270
Alignment:
Q  21 atgataagtgcttgtgctataagttgcaaataagttttttatccaaaca 69  Q
    ||||||||  ||||||| ||||| |||||||||||| ||||||||||||    
T  37473318 atgataagaacttgtgcaataagctgcaaataagttgtttatccaaaca 37473270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 69
Target Start/End: Complemental strand, 38247372 - 38247325
Alignment:
Q  21 atgataagtgcttgtgctataagttgcaaataagttttttatccaaaca 69  Q
    ||||||||||||||||||||||| ||||||| || | ||||||||||||    
T  38247372 atgataagtgcttgtgctataagctgcaaat-agctgtttatccaaaca 38247325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 69
Target Start/End: Complemental strand, 51688624 - 51688576
Alignment:
Q  21 atgataagtgcttgtgctataagttgcaaataagttttttatccaaaca 69  Q
    ||||||||  ||||| ||||||| |||||||||||| ||||||||||||    
T  51688624 atgataagcacttgtactataagctgcaaataagttgtttatccaaaca 51688576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 66
Target Start/End: Original strand, 9956953 - 9956998
Alignment:
Q  21 atgataagtgcttgtgctataagttgcaaataagttttttatccaa 66  Q
    ||||||||||||||||||||||| | |||||||||| |||||||||    
T  9956953 atgataagtgcttgtgctataagctacaaataagttgtttatccaa 9956998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 69
Target Start/End: Original strand, 14956446 - 14956494
Alignment:
Q  21 atgataagtgcttgtgctataagttgcaaataagttttttatccaaaca 69  Q
    |||||||| | |||||||||||| |||||||||||| ||||||||||||    
T  14956446 atgataagcgattgtgctataagctgcaaataagttgtttatccaaaca 14956494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 80
Target Start/End: Original strand, 25930702 - 25930749
Alignment:
Q  33 tgtgctataagttgcaaataagttttttatccaaacacaacctaaatt 80  Q
    ||||||||||| | |||||||||| ||||||||||||| |||||||||    
T  25930702 tgtgctataagcttcaaataagttctttatccaaacacgacctaaatt 25930749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 69
Target Start/End: Complemental strand, 40981047 - 40981001
Alignment:
Q  23 gataagtgcttgtgctataagttgcaaataagttttttatccaaaca 69  Q
    |||||| |||||||||||||| |||||||||| | ||||||||||||    
T  40981047 gataagcgcttgtgctataagctgcaaataagctgtttatccaaaca 40981001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 69
Target Start/End: Complemental strand, 41589612 - 41589561
Alignment:
Q  21 atgataagtgcttgtgctataagttgcaaataagt---tttttatccaaaca 69  Q
    ||||||| ||||||||||||||| |||||||||||   ||||||||||||||    
T  41589612 atgataaatgcttgtgctataagctgcaaataagtttatttttatccaaaca 41589561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 57
Target Start/End: Complemental strand, 1113004 - 1112968
Alignment:
Q  21 atgataagtgcttgtgctataagttgcaaataagttt 57  Q
    |||||||| ||||||||||| ||||||||||||||||    
T  1113004 atgataagcgcttgtgctatgagttgcaaataagttt 1112968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 69
Target Start/End: Original strand, 29819031 - 29819079
Alignment:
Q  21 atgataagtgcttgtgctataagttgcaaataagttttttatccaaaca 69  Q
    ||||||||  ||| ||||||||| |||||||||||| ||||||||||||    
T  29819031 atgataagcccttttgctataagctgcaaataagttgtttatccaaaca 29819079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 69
Target Start/End: Original strand, 36963496 - 36963544
Alignment:
Q  21 atgataagtgcttgtgctataagttgcaaataagttttttatccaaaca 69  Q
    |||||||| |||||||||||||| ||||||||| || |||| |||||||    
T  36963496 atgataagcgcttgtgctataagctgcaaataaattgtttacccaaaca 36963544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 69
Target Start/End: Complemental strand, 6538433 - 6538388
Alignment:
Q  24 ataagtgcttgtgctataagttgcaaataagttttttatccaaaca 69  Q
    |||||||||||||||||||| |||||||||| | ||||||||||||    
T  6538433 ataagtgcttgtgctataagctgcaaataagctatttatccaaaca 6538388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 69
Target Start/End: Original strand, 658586 - 658634
Alignment:
Q  21 atgataagtgcttgtgctataagttgcaaataagttttttatccaaaca 69  Q
    ||||||||| |||||||||||||||| |||||| |  ||||||||||||    
T  658586 atgataagtacttgtgctataagttgaaaataaatagtttatccaaaca 658634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 69
Target Start/End: Complemental strand, 35069481 - 35069433
Alignment:
Q  21 atgataagtgcttgtgctataagttgcaaataagttttttatccaaaca 69  Q
    |||||||  |||||||||||||| |||||||||||| |||||| |||||    
T  35069481 atgataaacgcttgtgctataagctgcaaataagttgtttatcaaaaca 35069433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 28792350 - 28792399
Alignment:
Q  20 aatgataagtgcttgtgctataagttgcaaataagttttttatccaaaca 69  Q
    ||||||| |||||||||||||||| ||||| |||| ||||||||||||||    
T  28792350 aatgataggtgcttgtgctataagctgcaagtaagctttttatccaaaca 28792399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 43570345 - 43570296
Alignment:
Q  21 atgataagtgcttgtgctataagttgcaaataagttttttatccaaacac 70  Q
    ||||||||||||||||||||||| |||||||||| | |||| ||||||||    
T  43570345 atgataagtgcttgtgctataagctgcaaataagctgtttacccaaacac 43570296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 67
Target Start/End: Complemental strand, 26626805 - 26626759
Alignment:
Q  21 atgataagtgcttgtgctataagttgcaaataagttttttatccaaa 67  Q
    |||||||| |||| ||||||||| |||||||||||| ||||||||||    
T  26626805 atgataagagcttatgctataagctgcaaataagttgtttatccaaa 26626759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 63
Target Start/End: Original strand, 27317254 - 27317304
Alignment:
Q  13 catcataaatgataagtgcttgtgctataagttgcaaataagttttttatc 63  Q
    ||||||| |||||||| | |||||||||||| |||||||||||| ||||||    
T  27317254 catcatacatgataagcgtttgtgctataagctgcaaataagttgtttatc 27317304  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 67
Target Start/End: Original strand, 27695738 - 27695784
Alignment:
Q  21 atgataagtgcttgtgctataagttgcaaataagttttttatccaaa 67  Q
    |||||||||| |||||||||||| | |||||||||| ||||||||||    
T  27695738 atgataagtgtttgtgctataagctacaaataagttgtttatccaaa 27695784  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 69
Target Start/End: Original strand, 41880643 - 41880692
Alignment:
Q  21 atgataagtgcttgtgctataagttgcaaa-taagttttttatccaaaca 69  Q
    |||||||| |||||||||||||| |||||| |||||| ||||||||||||    
T  41880643 atgataagcgcttgtgctataagctgcaaagtaagttgtttatccaaaca 41880692  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 69
Target Start/End: Complemental strand, 2416242 - 2416194
Alignment:
Q  21 atgataagtgcttgtgctataagttgcaaataagttttttatccaaaca 69  Q
    ||||||||  ||||||||||||| || ||||||||| ||||||||||||    
T  2416242 atgataagaacttgtgctataagctgaaaataagttgtttatccaaaca 2416194  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 69
Target Start/End: Original strand, 15757817 - 15757865
Alignment:
Q  21 atgataagtgcttgtgctataagttgcaaataagttttttatccaaaca 69  Q
    |||||||| |||||||||||||| || ||||||| | ||||||||||||    
T  15757817 atgataagcgcttgtgctataagctgaaaataagctgtttatccaaaca 15757865  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 69
Target Start/End: Original strand, 26143785 - 26143829
Alignment:
Q  25 taagtgcttgtgctataagttgcaaataagttttttatccaaaca 69  Q
    |||||||||||| |||||  |||||||||||| ||||||||||||    
T  26143785 taagtgcttgtgttataaactgcaaataagttgtttatccaaaca 26143829  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 69
Target Start/End: Original strand, 28330450 - 28330497
Alignment:
Q  21 atgataagtgcttgtgctataagttgcaaataagttttttatccaaaca 69  Q
    |||||||||||||||||||||||||  ||| ||||| ||||||||||||    
T  28330450 atgataagtgcttgtgctataagtt-taaaaaagttgtttatccaaaca 28330497  T

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Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 32592507 - 32592463
Alignment:
Q  20 aatgataagtgcttgtgctataagttgcaaataagttttttatcc 64  Q
    ||||||||||| |||||||||||| | |||||||||| |||||||    
T  32592507 aatgataagtgtttgtgctataagctacaaataagttgtttatcc 32592463  T

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Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 69
Target Start/End: Original strand, 40682514 - 40682562
Alignment:
Q  21 atgataagtgcttgtgctataagttgcaaataagttttttatccaaaca 69  Q
    |||||||| ||||| ||||| ||||||||||||| | ||||||||||||    
T  40682514 atgataagcgcttgcgctatgagttgcaaataagatgtttatccaaaca 40682562  T

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Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 69
Target Start/End: Complemental strand, 40835471 - 40835435
Alignment:
Q  33 tgtgctataagttgcaaataagttttttatccaaaca 69  Q
    ||||||||||| |||||||||||| ||||||||||||    
T  40835471 tgtgctataagctgcaaataagttgtttatccaaaca 40835435  T

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Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 69
Target Start/End: Complemental strand, 41407220 - 41407172
Alignment:
Q  21 atgataagtgcttgtgctataagttgcaaataagttttttatccaaaca 69  Q
    |||||||| |||||||||||||| |||||| ||| | ||||||||||||    
T  41407220 atgataagcgcttgtgctataagctgcaaacaagctgtttatccaaaca 41407172  T

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Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 69
Target Start/End: Original strand, 42659302 - 42659350
Alignment:
Q  21 atgataagtgcttgtgctataagttgcaaataagttttttatccaaaca 69  Q
    ||||||||||  |||||||| || ||||||||||||| |||||||||||    
T  42659302 atgataagtgtgtgtgctattagctgcaaataagtttcttatccaaaca 42659350  T

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Target: scaffold0018 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 69
Target Start/End: Complemental strand, 158023 - 157978
Alignment:
Q  24 ataagtgcttgtgctataagttgcaaataagttttttatccaaaca 69  Q
    ||||||| |||||||||||| |||||||||| | ||||||||||||    
T  158023 ataagtgtttgtgctataagctgcaaataagctgtttatccaaaca 157978  T

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Target: scaffold0699 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0699
Description:

Target: scaffold0699; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 69
Target Start/End: Complemental strand, 6833 - 6785
Alignment:
Q  21 atgataagtgcttgtgctataagttgcaaataagttttttatccaaaca 69  Q
    |||||||||||||||||| |||| ||||||||||   ||||||||||||    
T  6833 atgataagtgcttgtgctctaagctgcaaataagcaatttatccaaaca 6785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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