View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4619_low_2 (Length: 363)
Name: NF4619_low_2
Description: NF4619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4619_low_2 |
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| [»] chr5 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 18 - 363
Target Start/End: Complemental strand, 29206968 - 29206623
Alignment:
| Q |
18 |
gttctatcgtattcatgctaatcactgaaaaacaatcaatctacaaatcatttactatgctcttaatctatcaccatttttaccagcagcatcagcatac |
117 |
Q |
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| T |
29206968 |
gttctatcgtattcatgctaatcactgaaaaacaatcaatctacaaatcatttactatgctcttaatctatcaccatttttaccagcagcatcagcatac |
29206869 |
T |
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| Q |
118 |
tctcctatagtcctatcaaaacatattgagcaaaccctctggatttacgtatcaatttttaccaggactttgatgcctagagttaaaattactgaggtaa |
217 |
Q |
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| T |
29206868 |
tctcccatagtcctatcaaaacatattgagcaaaccctctggatttacgtatcaatttttaccaggactttgatgcctagagttaaaattactgaggtaa |
29206769 |
T |
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| Q |
218 |
atacaaatagaatgttcatattaattttgcagttacaaagcatatttgcttttaagcatccataaaatacatatctactttgataatgcttacttgttca |
317 |
Q |
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| T |
29206768 |
atacaaatagaatgttcatattaattttgcagttacaaagcatatttgcttttaaacatccataaaatacatatctactttgataatgcttacttgttca |
29206669 |
T |
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| Q |
318 |
tcaaatcgtatgcttcaaagctgatctcctcaggatgctttggcca |
363 |
Q |
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| T |
29206668 |
tcaaatcgtatgcttcaaagctgatctcctcaggatgctttggcca |
29206623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 19 - 363
Target Start/End: Original strand, 12644894 - 12645237
Alignment:
| Q |
19 |
ttctatcgtattcatgctaatcactgaaaaacaatcaatctacaaatcatttactatgctcttaatctatcaccatttttaccagcagcatcagcatact |
118 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12644894 |
ttctatcgtattcatgctaatcactgaaaa-caatcaatctacaaatcatttactatgctcttaatctatcaccatttttaccagcagcatcagcatact |
12644992 |
T |
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| Q |
119 |
ctcctatagtcctatcaaaacatattgagcaaaccctctggatttacgtatcaatttttaccaggactttgatgcctagagttaaaattactgaggtaaa |
218 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12644993 |
ctcctatagtcctatcaaaacatatcgagcaaaccctctggatttacgtatcaatttttaccaggactttgatgcctagagttaaaattactgaggtaaa |
12645092 |
T |
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| Q |
219 |
tacaaatagaatgttcatattaattttgcagttacaaagcatatttgcttttaagcatccataaaatacatatctactttgataatgcttacttgttcat |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12645093 |
tacaaatagaatgttcatattaattttgcagttacaaagcatattcgcttttaaacatccataaaatacatatctactttgataatgcttacttgttcat |
12645192 |
T |
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| Q |
319 |
caaatcgtatgcttcaaagctgatctcctcaggatgctttggcca |
363 |
Q |
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| T |
12645193 |
caaatcgtatgcttcaaagctaatctcctcaggatactttggcca |
12645237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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