View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4620-Insertion-1 (Length: 1108)
Name: NF4620-Insertion-1
Description: NF4620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4620-Insertion-1 |
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Alignment Details
Target: chr7 (Bit Score: 468; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 205 - 749
Target Start/End: Original strand, 2034870 - 2035414
Alignment:
| Q |
205 |
gattctgattctcctttaagtaaacatcaggaactgaatgtaagaagcatggttctaaattgcatttgcagaaaaatgcagccaatgaagccacatttgc |
304 |
Q |
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| T |
2034870 |
gattccgattctcctttaagtaaacatcaggaactgaatgtaagaagcatggttctaaattgcatttgcagaaaaatgcagccaatgaagccacatttgc |
2034969 |
T |
|
| Q |
305 |
agttacaataccgttgcagagacctctaaaacctttatattacgagtgcaattgcggttacaaatcacaatttaaaactatgttaagaagatagaaatga |
404 |
Q |
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| T |
2034970 |
agttacaataccgttgcagagacctctaaaacctttatattacgagtataattgcacttgcaaaccacaatttaaaactatgttaagaagatagaaatga |
2035069 |
T |
|
| Q |
405 |
taccatttccctttgcaccactattaaaatccaaatattttaccatatagactaccatgaagcataaatgtgatgtaacatagatcaaggtgttaattta |
504 |
Q |
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| T |
2035070 |
taccatttccctttgcaccactattaaaatccaaatattttaccatatagactaccatgaagcataaatgtgatgtaacatagatcaaggtgttaattta |
2035169 |
T |
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| Q |
505 |
tagtaatttataacttgtatgttactaaaaaatgaggatataggttatcatnnnnnnntcagttgagcaataaatttagatgcaatgtgtatctaaatga |
604 |
Q |
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| T |
2035170 |
tagtaattcataacttgtatgttactaaaaaacgaggatataagttatcataaaaaaatcatttgagcaataaatttagatgcaatgtgtatctaaatga |
2035269 |
T |
|
| Q |
605 |
agtaaaaaagaaaataccacatggaaacaagagacagttaaaatgtaagttctggccctacattgattgtttagattactttatttagatgaaacaagat |
704 |
Q |
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| T |
2035270 |
agtaaaaaagaaaataccacatggaaacaagagacagttaaaatgtaagttctggccctacattgattgtttagattactttatttagatgaaacaagat |
2035369 |
T |
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| Q |
705 |
taatttaagcatatgttataatttcttacttgatctaatcaaaat |
749 |
Q |
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| T |
2035370 |
taatttaagcatatgttataatttcttacatgatttaataaaaat |
2035414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 739 - 1032
Target Start/End: Original strand, 2035605 - 2035904
Alignment:
| Q |
739 |
ctaatcaaaatccttatacattgtaagataagatttaattgcttgtttgtttgttatttgtacctgtgtcttgtgatggaggtgcagatagcatgttctt |
838 |
Q |
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| T |
2035605 |
ctaattaaaatccttatacattgtaagataagatttaattgcttgtttgtttgttatttgtacctgtgtcttgtgatggaggtgcagatagcatgttctt |
2035704 |
T |
|
| Q |
839 |
ggcagcatcaaactcataaagaaataaaagcaaattgtacc-aatcatactttgcaagaaaacaatctgagctaacaagac-atagcttgatccttatac |
936 |
Q |
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| T |
2035705 |
ggcagcatcaaactcataaagaaataaaagcaaattgtaccaaatcatactttgcaagaaaacaatctgagctaacaagacaatagcttcatccttatac |
2035804 |
T |
|
| Q |
937 |
attgcttttaacaatggaattcc-agaatc-aagtattagg-agtgttgataatgaaaaccca-ttataatccatttcagaccacctttaccactaatct |
1032 |
Q |
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| T |
2035805 |
attgcttttaacaatggaattccaagaatcaaagtattaggaagtgttgataatgaaaaaccagttataatccatttcaaaccacctttaccactaatct |
2035904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 126; E-Value: 2e-64
Query Start/End: Original strand, 7 - 136
Target Start/End: Original strand, 2034672 - 2034801
Alignment:
| Q |
7 |
aattaaatctatatatacatacataataatcacctgaactgtatgcttgaccaaatgatgcctattaaagaggcaaatgtatttggatttctgattagct |
106 |
Q |
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| T |
2034672 |
aattaaatctatatatacatacataataatcacctgaactgtatgcttgaccaaatgatgcctattaaagaggcaaaagtatttggatttctgattagct |
2034771 |
T |
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| Q |
107 |
tcttccccactgtgacaagaatgggaaaga |
136 |
Q |
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| T |
2034772 |
tcttccccactgtgacaagaatgggaaaga |
2034801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 345
Target Start/End: Original strand, 22602141 - 22602180
Alignment:
| Q |
306 |
gttacaataccgttgcagagacctctaaaacctttatatt |
345 |
Q |
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| T |
22602141 |
gttacaatgccgttgcagagaccactaaaacctttatatt |
22602180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.00000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 840 - 908
Target Start/End: Original strand, 3217443 - 3217512
Alignment:
| Q |
840 |
gcagcatcaaactcataaagaaataaaagcaaattgtacc-aatcatactttgcaagaaaacaatctgag |
908 |
Q |
| |
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| T |
3217443 |
gcagcatcaagctcatgaagaaacaaaagcaaattataccaaatcatactttgcaagaaaataatctgag |
3217512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 316 - 346
Target Start/End: Complemental strand, 5998406 - 5998376
Alignment:
| Q |
316 |
cgttgcagagacctctaaaacctttatatta |
346 |
Q |
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| T |
5998406 |
cgttgcagagacctctaaaacctttatatta |
5998376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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