View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4620-Insertion-10 (Length: 605)
Name: NF4620-Insertion-10
Description: NF4620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4620-Insertion-10 |
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| [»] chr4 (7 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 404; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 121 - 605
Target Start/End: Original strand, 4623649 - 4624130
Alignment:
| Q |
121 |
atcaaataatatataacaataatctcaagagagtcctactcacccatgctccaatgtatgtcccatctttattcttatctgtcatgaatcataccagaaa |
220 |
Q |
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||||||||| || |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4623649 |
atcaaataagatgtaacaataatctcaagagagtcttactcacccatgctccaatgtatgtcccatctttattcttatctgtcatgaatcataccagaaa |
4623748 |
T |
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| Q |
221 |
acaatttatgtcaaacaaggaatcatagcaaaaattgannnnnnnnctattaatgatttatgccatcttcattaggagtggtgagaaaggtgttcttgcc |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| || |
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| T |
4623749 |
acaatttatgtcaaacaaggaatcatagcaaaaattgattttt---ctattaatgatttatgccatcttcattaggagtggtgtgaaaggtgttcttacc |
4623845 |
T |
|
| Q |
321 |
tgttaaagtcacattaacaattttgaaaacactattgacgccgtcagcgccgcccgatgcagactgtagaggaattggtttcgttgcattggcagtatac |
420 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||| |
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| T |
4623846 |
tgttaaagtcacattaacaattttgaaaacactattgacgccgtcagcgccgcccgatggagactgtataggaattggtttcgttgcattggcagcatac |
4623945 |
T |
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| Q |
421 |
atgctagtgtagtaattgattccaataaaatcgtatgacccaataagactcttagattgctctgcagtgaactttggtaacttatctcccacataagaca |
520 |
Q |
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||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
4623946 |
atgctggtgtagtaattgattccaataaaatcatatgacccaataagactcttagattgctctgcagtgaactttggtagcttatctcccacataagaca |
4624045 |
T |
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| Q |
521 |
ccaagcttgctggatactctcctgttgtcagtggttgtataaacctgcaaacagataaagaagatttcaaattatacggtcacaa |
605 |
Q |
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| T |
4624046 |
ccaagcttgctggatactctcctgttgtcagtggctgtataaacctgcaaacagataaagaagattttaaattatacggtcacaa |
4624130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 8 - 238
Target Start/End: Original strand, 4599144 - 4599374
Alignment:
| Q |
8 |
agtaggtcctgaatccccttyggacaaacatataaccaagtcgcagcctgcacatattgtttagttaagagtactggtacaacttaatttgcgagtacac |
107 |
Q |
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|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4599144 |
agtaggtcctgaatcccctttggacaaacatataaccaagttgcagcctgcacatattgtttagttaagagtactggtacaacttaatttgcgagtacat |
4599243 |
T |
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| Q |
108 |
catagaagtttccatcaaataatatataacaataatctcaagagagtcctactcacccatgctccaatgtatgtcccatctttattcttatctgtcatga |
207 |
Q |
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| T |
4599244 |
catagaagtttccatcaaataatatataacaataattgcaagagagtcttactcacccttggtccaacgggcgtcccatcatgattctcatctgtcatga |
4599343 |
T |
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| Q |
208 |
atcataccagaaaacaatttatgtcaaacaa |
238 |
Q |
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| T |
4599344 |
atcatagaagaaaacaatttatagcaaacaa |
4599374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 402 - 594
Target Start/End: Original strand, 4599599 - 4599788
Alignment:
| Q |
402 |
cgttgcattggcagtatacatgctagtgtagtaattgattccaataaaatcgtatgacccaataagactcttagattgctctgcagtgaactttggtaac |
501 |
Q |
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|||||||||||||| ||||||| | |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||| |
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| T |
4599599 |
cgttgcattggcagcatacatggtggtgtagtaattgattccaataaaatcatatgacccaataagacttttagattgctcttcagtgaactttggtaa- |
4599697 |
T |
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| Q |
502 |
ttatctcccacataagacaccaagcttgctggatactctcctgttgtcagtggttgtataaacctgcaaacagataaagaagatttcaaatta |
594 |
Q |
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| T |
4599698 |
--atctttcacgaaagacaccatgtttgctggatactctccggttgtcagtggctgtataaacctgcaaacagataaagaagattttaaatta |
4599788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 427 - 573
Target Start/End: Original strand, 25038145 - 25038291
Alignment:
| Q |
427 |
gtgtagtaattgattccaataaaatcgtatgacccaataagactcttagattgctctgcagtgaactttggtaacttatctcccacataagacaccaagc |
526 |
Q |
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|||||||||||||||||||||||||| |||| ||||||||| |||||||||||||| |||||||||||||| || ||||||||||||||||| || |
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| T |
25038145 |
gtgtagtaattgattccaataaaatcaaatgagccaataagaatcttagattgctctctggtgaactttggtaaacgatttcccacataagacaccatgc |
25038244 |
T |
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| Q |
527 |
ttgctggatactctcctgttgtcagtggttgtataaacctgcaaaca |
573 |
Q |
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||| |||||||||||||||||||||||| || |||||||| |||||| |
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| T |
25038245 |
ttgatggatactctcctgttgtcagtggctgcataaacctacaaaca |
25038291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 427 - 573
Target Start/End: Original strand, 25017040 - 25017186
Alignment:
| Q |
427 |
gtgtagtaattgattccaataaaatcgtatgacccaataagactcttagattgctctgcagtgaactttggtaacttatctcccacataagacaccaagc |
526 |
Q |
| |
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|||||||||||||||||||||||||| |||| |||||||| |||||||||||||| |||||||||||||| || |||| || ||||||||| || |
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| T |
25017040 |
gtgtagtaattgattccaataaaatcaaatgagccaataagcatcttagattgctctttggtgaactttggtaaacgatttcccgcaaaagacaccatgc |
25017139 |
T |
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| Q |
527 |
ttgctggatactctcctgttgtcagtggttgtataaacctgcaaaca |
573 |
Q |
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|| ||||||||||||||| |||| ||| || ||||||||||||||| |
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| T |
25017140 |
ttaatggatactctcctgtggtcaatggctgcataaacctgcaaaca |
25017186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 4623571 - 4623637
Alignment:
| Q |
8 |
agtaggtcctgaatccccttyggacaaacatataaccaagtcgcagcctgcacatattgtttagtta |
74 |
Q |
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|||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
4623571 |
agtaggtcctgaataccctttggacaaacatataaccaagttgcagcctgcacatattgtttagtta |
4623637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 314 - 378
Target Start/End: Original strand, 4599505 - 4599569
Alignment:
| Q |
314 |
tcttgcctgttaaagtcacattaacaattttgaaaacactattgacgccgtcagcgccgcccgat |
378 |
Q |
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|||| ||||||||| ||||||| | ||||||||||||||||||||||| | || ||||||||| |
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| T |
4599505 |
tcttacctgttaaaacgacattaaaacttttgaaaacactattgacgccggcggcaccgcccgat |
4599569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 98; Significance: 5e-48; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 427 - 594
Target Start/End: Complemental strand, 18804855 - 18804691
Alignment:
| Q |
427 |
gtgtagtaattgattccaataaaatcgtatgacccaataagactcttagattgctctgcagtgaactttggtaacttatctcccacataagacaccaagc |
526 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||| | |||||||| ||||||||||||||| | || || || |||||||| || |
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| T |
18804855 |
gtgtagtaattaattccaataaaatcgtatgacccaataagactctcatattgctctttagtgaactttggtaatgtttc---caaattagacaccatgc |
18804759 |
T |
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| Q |
527 |
ttgctggatactctcctgttgtcagtggttgtataaacctgcaaacagataaagaagatttcaaatta |
594 |
Q |
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||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |
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| T |
18804758 |
ttgctgggtactctcctgttgtcagtggttgtaaaaacctgcaaacagataaagaagattttaaatta |
18804691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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