View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4620-Insertion-11 (Length: 531)

Name: NF4620-Insertion-11
Description: NF4620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4620-Insertion-11
NF4620-Insertion-11
[»] chr4 (8 HSPs)
chr4 (7-496)||(5174557-5175045)
chr4 (9-337)||(5215445-5215774)
chr4 (7-337)||(5197298-5197629)
chr4 (7-336)||(5183899-5184229)
chr4 (7-474)||(4840501-4840965)
chr4 (8-400)||(4855078-4855470)
chr4 (8-337)||(5161617-5161949)
chr4 (394-474)||(5184282-5184362)
[»] chr2 (3 HSPs)
chr2 (364-503)||(36248934-36249073)
chr2 (364-503)||(19626634-19626773)
chr2 (364-503)||(19823535-19823674)
[»] chr1 (1 HSPs)
chr1 (364-503)||(23084021-23084160)
[»] chr6 (1 HSPs)
chr6 (364-503)||(16550067-16550206)
[»] chr7 (1 HSPs)
chr7 (364-471)||(4826657-4826762)


Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-118; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 7 - 496
Target Start/End: Original strand, 5174557 - 5175045
Alignment:
Q  7 actacagaggtaatcccggtctgtgtggacaactccttaatcaaaagtgtgaacgtgtcaagtcttcaccttcatcacaatccaatgacaatgaacaaaa 106  Q
    |||||| ||||||||| ||||| ||||||| | || | |||| ||||||||||| |||| |||||||| | |||||||||||||||||| | | | ||||    
T  5174557 actacataggtaatcctggtctttgtggaccattcgtcaatcgaaagtgtgaacatgtcgagtcttcagcatcatcacaatccaatgacgacggagaaaa 5174656  T
Q  107 ggaaaccaat-tggacatgataacattttattggagtttcacagcatcttacataacaatattgctggccttcataacagttttgtgcatcaatccacgt 205  Q
    ||||||||   ||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||    
T  5174657 ggaaaccatggtggacatgataactttttattggagtttcacagcatcttacataacaatattgttggccctcataacagttttgtgcatcaatccacgt 5174756  T
Q  206 tggcgtatggcctggttttattacatcagtaagtttatgcgtagattttttccaacttttccattgtattgaagaatatccatagtacctgttgaaactt 305  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||      ||| ||||||    
T  5174757 tggcgtatggcctggttttattatatcagtaagtttatgcgtagattttttccaacttttccattgtattgaagagtgtccata------gtttaaactt 5174850  T
Q  306 tatttggagtctcaaatatttggatattgtaannnnnnnctttagctttga-tttcgaca-gtttaatgttgagacatttgatgttcaggtccttttgtc 403  Q
    ||| ||||||||||||||||||||||||||||       |||||||||| | |||||| | ||| |   |||||| |||  |||||||| ||||||||||    
T  5174851 tatgtggagtctcaaatatttggatattgtaatttttacctttagctttaattttcgagatgttgagacttgagaaattgaatgttcagttccttttgtc 5174950  T
Q  404 aactttatgttcagcctgttgtttgtgtaattttcttatctgaagtggtttgaagctattgttatatatta--gtattgtttagcttgttgaacc 496  Q
    ||||||||| ||| | |||||||||||| || |  ||||||| ||||||||| ||  ||||||||||||||  ||||| |||||| | |||||||    
T  5174951 aactttatgatcatcgtgttgtttgtgtgatgtatttatctggagtggtttggaggcattgttatatattattgtattatttagcattttgaacc 5175045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 9 - 337
Target Start/End: Original strand, 5215445 - 5215774
Alignment:
Q  9 tacagaggtaatcccggtctgtgtggacaactccttaatcaaaagtgtgaacgtgtcaagtcttcaccttcatcacaatccaatgacaatgaacaaaagg 108  Q
    |||||||||||||||||||| ||||||| ||||||  |||||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||    
T  5215445 tacagaggtaatcccggtctttgtggaccactcctctatcaaaagtgtgaacgtgtcgagtcttcaccttcatcacaatccaatgacaatggagaaaagg 5215544  T
Q  109 aaaccaat-tggacatgataacattttattggagtttcacagcatcttacataacaatattgctggccttcataacagttttgtgcatcaatccacgttg 207  Q
    ||||||   |||||||||||||||||||||||||||||||||||||||||||||||||| |  |||||||||||||||| |||||| |||||||||||||    
T  5215545 aaaccatggtggacatgataacattttattggagtttcacagcatcttacataacaatactattggccttcataacagtgttgtgcgtcaatccacgttg 5215644  T
Q  208 gcgtatggcctggttttattacatcagtaagtttatgcgtagattttttccaacttttccattgtattgaagaatatccatagtacctgttgaaacttta 307  Q
    ||||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||||||||||||| | ||  |  | ||||||||||||| |    
T  5215645 gcgtatggcctggttttattacatcagtaagtttatgcgtaaaatttttccaacgtttccattgtattgaagagtgtctgttattcctgttgaaacttca 5215744  T
Q  308 tttggagtctcaaatatttggatattgtaa 337  Q
      || |||||||||||||||||||||||||    
T  5215745 agtgaagtctcaaatatttggatattgtaa 5215774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 7 - 337
Target Start/End: Original strand, 5197298 - 5197629
Alignment:
Q  7 actacagaggtaatcccggtctgtgtggacaactccttaatcaaaagtgtgaacgtgtcaagtcttcaccttcatcacaatccaatgacaatgaacaaaa 106  Q
    ||||||||||||||||| |||| ||||||| |||||| | || |||||||||||||||| || || |||| ||||| |||||||||||||||||| || |    
T  5197298 actacagaggtaatcccagtctttgtggaccactcctcagtcgaaagtgtgaacgtgtcgagcctccaccatcatcccaatccaatgacaatgaagaaga 5197397  T
Q  107 ggaaaccaat-tggacatgataacattttattggagtttcacagcatcttacataacaatattgctggccttcataacagttttgtgcatcaatccacgt 205  Q
    ||||||   | |||||||||||||||||||||||||||||||||||||||||||||||||| |  |||||||||||||||| ||||||||||||||||||    
T  5197398 ggaaactggtgtggacatgataacattttattggagtttcacagcatcttacataacaatactattggccttcataacagtgttgtgcatcaatccacgt 5197497  T
Q  206 tggcgtatggcctggttttattacatcagtaagtttatgcgtagattttttccaacttttccattgtattgaagaatatccatagtacctgttgaaactt 305  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |  ||||||| ||||||||||| |    
T  5197498 tggcgcatggcctggttttattacatcagtaagtttatgcgtagattctttccaacttttccattgtattgaagagtggccatagttcctgttgaaacat 5197597  T
Q  306 tatttggagtctcaaatatttggatattgtaa 337  Q
    ||| |||||||||||||||||| |||||||||    
T  5197598 tatgtggagtctcaaatatttgcatattgtaa 5197629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 7 - 336
Target Start/End: Original strand, 5183899 - 5184229
Alignment:
Q  7 actacagaggtaatcccggtctgtgtggacaactccttaatcaaaagtgtgaacgtgtcaagtcttcaccttcatcacaatccaatgacaatgaacaaaa 106  Q
    |||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||||    
T  5183899 actacagaggtaatcccggtctttgcggacaactcctaaatcaaaagtgtgaacgtgtcgagtcttcaccttcatcacaatccaatgacaatggagaaaa 5183998  T
Q  107 ggaaaccaat-tggacatgataacattttattggagtttcacagcatcttacataacaatattgctggccttcataacagttttgtgcatcaatccacgt 205  Q
    | ||||||   |||||||||||||||||||||||||||||| | ||||||| || |||||| |  ||||||||||||| || ||| ||||||||||||||    
T  5183999 gcaaaccatggtggacatgataacattttattggagtttcataacatcttatattacaatactattggccttcataactgtgttgggcatcaatccacgt 5184098  T
Q  206 tggcgtatggcctggttttattacatcagtaagtttatgcgtagattttttccaacttttccattgtattgaagaatatccatagtacctgttgaaactt 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |||||| || | |||||||| |||||||||||||    
T  5184099 tggcgtatggcctggttttattacatcagtaagtttatgcgtagattctttccatcttttccattatattgatgagtgtccatagttcctgttgaaactt 5184198  T
Q  306 tatttggagtctcaaatatttggatattgta 336  Q
    ||| |||||||| ||||||||||||| ||||    
T  5184199 tatgtggagtctaaaatatttggatactgta 5184229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 7 - 474
Target Start/End: Complemental strand, 4840965 - 4840501
Alignment:
Q  7 actacagaggtaatcccggtctgtgtggacaactccttaatcaaaagtgtgaacgtgtcaagtcttcaccttcatcacaatccaatgacaatgaacaaaa 106  Q
    |||||| ||||||||| ||||| ||||||| | |||| |||| ||||||||||| |||| |||||||| | |||||||||||||||||| | | | ||||    
T  4840965 actacataggtaatcctggtctttgtggaccattcctcaatcgaaagtgtgaacatgtcgagtcttcagcatcatcacaatccaatgacgacggagaaaa 4840866  T
Q  107 ggaaaccaat-tggacatgataacattttattggagtttcacagcatcttacataacaatattgctggccttcataacagttttgtgcatcaatccacgt 205  Q
    ||||||||   ||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||    
T  4840865 ggaaaccatggtggacatgataactttttattggagtttcacagcatcttacataacaatattgttagccttcataacagtgttgtgcatcaatccacgt 4840766  T
Q  206 tggcgtatggcctggttttattacatcagtaagtttatgcgtagattttttccaacttttccattgtattgaagaatatccatagtacctgttgaaactt 305  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||      ||| ||||||    
T  4840765 tggcgtatggcctggttttattacatcagtaagtttatgcgtagattttttccaacttttccattgtattaaagagtgtccata------gtttaaactt 4840672  T
Q  306 tatttggagtctcaaatatttggatattgtaannnnnnnctttagctttga-tttcgaca-gtttaatgttgagacatttgatgttcaggtccttttgtc 403  Q
    ||| |||||||| |||||||||||||||||||       |||||||||| | |||||| | ||| |   ||||||||||  |||||||| |||| |||||    
T  4840671 tatgtggagtctaaaatatttggatattgtaatttttatctttagctttaattttcgagatgttgagacttgagacattgaatgttcagttcctattgtc 4840572  T
Q  404 aactttatgttcagcctgttgtttgtgtaattttcttatctgaagtggtttgaagctattgttatatatta 474  Q
    || |||||| ||| | | |||||||| | || |  ||||||| ||||||||| ||  ||||||||||||||    
T  4840571 aattttatgatcatcgtattgtttgtctgatgtatttatctggagtggtttggaggcattgttatatatta 4840501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 8 - 400
Target Start/End: Complemental strand, 4855470 - 4855078
Alignment:
Q  8 ctacagaggtaatcccggtctgtgtggacaactccttaatcaaaagtgtgaacgtgtcaagtcttcaccttcatcacaatccaatgacaatgaacaaaag 107  Q
    ||||||||||||||||| ||| ||||||| ||||||  | | |||||||||| ||| |||||||||||| |||||||||||||||||||||||| || ||    
T  4855470 ctacagaggtaatcccgatctttgtggaccactcctcgaccgaaagtgtgaaggtgccaagtcttcaccatcatcacaatccaatgacaatgaagaagag 4855371  T
Q  108 gaaaccaat-tggacatgataacattttattggagtttcacagcatcttacataacaatattgctggccttcataacagttttgtgcatcaatccacgtt 206  Q
    ||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||| | ||| ||||||||||||| |||  ||||||||||||||    
T  4855370 gaaacaaatgtggacatgataacattttattggagtttcacaccatcttacataacaatactactgaccttcataacagtgttg--catcaatccacgtt 4855273  T
Q  207 ggcgtatggcctggttttattacatcagtaagtttatgcgtagattttttccaacttttccattgtattgaagaatatccatagtacctgttgaaacttt 306  Q
    ||||| ||||||||||||||||||| ||||||||| |  |||  ||||||||||||||||||||||||| |||| | ||| |||||||||||||||||||    
T  4855272 ggcgtttggcctggttttattacattagtaagtttgtaggtatcttttttccaacttttccattgtattaaagagtgtccgtagtacctgttgaaacttt 4855173  T
Q  307 atttggagtctcaaatatttggatattgtaannnnnnnctttagctttgatttc-gacagtttaatgttgagacatttgatgttcaggtcctttt 400  Q
    || ||||||||||||||||||| ||||||||        |||| |||| ||||| |||||||| ||| ||||||||||||| || || |||||||    
T  4855172 atgtggagtctcaaatatttgggtattgtaatttttatatttaactttaatttcagacagtttgatgctgagacatttgattttaagctcctttt 4855078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 173; E-Value: 9e-93
Query Start/End: Original strand, 8 - 337
Target Start/End: Original strand, 5161617 - 5161949
Alignment:
Q  8 ctacagaggtaatcccggtctgtgtggacaactccttaatcaaaagtgtgaacgtgtcaagtcttcaccttcatcacaatccaatgacaatgaacaaaag 107  Q
    ||||||||||||||||||||| ||||||  ||||||  | | |||||||||| |||||||||||||||| |||||||||||||||||||||||| || ||    
T  5161617 ctacagaggtaatcccggtctttgtggatcactcctcgaccgaaagtgtgaaggtgtcaagtcttcaccatcatcacaatccaatgacaatgaagaagag 5161716  T
Q  108 gaaaccaat-tggacatgataacattttattggag-tttc-acagcatcttacataacaatattgctggccttcataacagttttgtgcatcaatccacg 204  Q
    ||||| ||| ||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||| ||||||| ||||| |||||| | ||    
T  5161717 gaaacaaatgtggacatgataacattttattggaggtttctacagcatcttacataacaatattgttggccttcgtaacagtgttgtgtatcaatgctcg 5161816  T
Q  205 ttggcgtatggcctggttttattacatcagtaagtttatgcgtagattttttccaacttttccattgtattgaagaatatccatagtacctgttgaaact 304  Q
    |||||||||||| |||||||||||||| |||||||||   ||    ||||||||||||||||||||||| |||||| | | | |||||||||||||||||    
T  5161817 ttggcgtatggcttggttttattacattagtaagtttgcacgatttttttttccaacttttccattgtactgaagagtgtacgtagtacctgttgaaact 5161916  T
Q  305 ttatttggagtctcaaatatttggatattgtaa 337  Q
    |||  ||||||||||||||||||||||||||||    
T  5161917 ttacgtggagtctcaaatatttggatattgtaa 5161949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 394 - 474
Target Start/End: Original strand, 5184282 - 5184362
Alignment:
Q  394 tccttttgtcaactttatgttcagcctgttgtttgtgtaattttcttatctgaagtggtttgaagctattgttatatatta 474  Q
    |||| |||||||||||||||||| | |||||||||||| || | |||||||| ||   ||||||| |||||| ||||||||    
T  5184282 tcctcttgtcaactttatgttcatcatgttgtttgtgtgatgtacttatctggagaactttgaagatattgtgatatatta 5184362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 6e-23; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 364 - 503
Target Start/End: Original strand, 36248934 - 36249073
Alignment:
Q  364 agtttaatgttgagacatttgatgttcaggtccttttgtcaactttatgttcagcctgttgtttgtgtaattttcttatctgaagtggtttgaagctatt 463  Q
    ||||| ||||||||| | ||||||||||| || ||||||| |  |||||| || |||||||||| ||| || |||||||||  |||||||||||||||||    
T  36248934 agtttgatgttgagataattgatgttcagatcattttgtcca--ttatgtgcatcctgttgtttttgtcatattcttatctagagtggtttgaagctatt 36249031  T
Q  464 gttatatatta--gtattgtttagcttgttgaaccagaattg 503  Q
    |||||||||||   ||||||||||||| |||||| |||||||    
T  36249032 gttatatattattatattgtttagctttttgaactagaattg 36249073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 364 - 503
Target Start/End: Original strand, 19626634 - 19626773
Alignment:
Q  364 agtttaatgttgagacatttgatgttcaggtccttttgtcaactttatgttcagcctgttgtttgtgtaattttcttatctgaagtggtttgaagctatt 463  Q
    ||||| ||||||||| | ||||||||||| |  ||||||| |  |||||| || ||||||| || ||| || |||||||||  |||||||||||||||||    
T  19626634 agtttgatgttgagataattgatgttcagtttattttgtcca--ttatgtgcatcctgttggttttgtcatattcttatctagagtggtttgaagctatt 19626731  T
Q  464 gttatatatta--gtattgtttagcttgttgaaccagaattg 503  Q
    |||||||||||   ||||||||||||| |||||| |||||||    
T  19626732 gttatatattattatattgtttagctttttgaactagaattg 19626773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 364 - 503
Target Start/End: Original strand, 19823535 - 19823674
Alignment:
Q  364 agtttaatgttgagacatttgatgttcaggtccttttgtcaactttatgttcagcctgttgtttgtgtaattttcttatctgaagtggtttgaagctatt 463  Q
    ||||| ||||||||| | ||||||||||| |  ||||||| |  |||||| || ||||||| || ||| || |||||||||  |||||||||||||||||    
T  19823535 agtttgatgttgagataattgatgttcagtttattttgtcca--ttatgtgcatcctgttggttttgtcatattcttatctagagtggtttgaagctatt 19823632  T
Q  464 gttatatatta--gtattgtttagcttgttgaaccagaattg 503  Q
    |||||||||||   ||||||||||||| |||||| |||||||    
T  19823633 gttatatattattatattgtttagctttttgaactagaattg 19823674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 364 - 503
Target Start/End: Complemental strand, 23084160 - 23084021
Alignment:
Q  364 agtttaatgttgagacatttgatgttcaggtccttttgtcaactttatgttcagcctgttgtttgtgtaattttcttatctgaagtggtttgaagctatt 463  Q
    ||||| ||||||||| ||||||||||||| |  |||||||  |||||||| || |||||||||| | | || | |||||||| ||||||||| |||||||    
T  23084160 agtttgatgttgagatatttgatgttcagttaattttgtc--ctttatgtgcatcctgttgtttttttcatatacttatctggagtggtttgcagctatt 23084063  T
Q  464 gttatata--ttagtattgtttagcttgttgaaccagaattg 503  Q
    ||||||||  || |||||||||||||| |||||| |||||||    
T  23084062 gttatatatttttgtattgtttagctttttgaactagaattg 23084021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 364 - 503
Target Start/End: Complemental strand, 16550206 - 16550067
Alignment:
Q  364 agtttaatgttgagacatttgatgttcaggtccttttgtcaactttatgttcagcctgttgtttgtgtaattttcttatctgaagtggtttgaagctatt 463  Q
    ||||| ||||||||  | ||||||||||| || ||||||| |  |||||| || |||||||||| ||| || ||||||| || |||||||||||||||||    
T  16550206 agtttgatgttgaggtaattgatgttcagatcattttgtcca--ttatgtgcatcctgttgtttttgtcatattcttatttggagtggtttgaagctatt 16550109  T
Q  464 gttatatatta--gtattgtttagcttgttgaaccagaattg 503  Q
    |||||||||||   ||||||||| ||| |||||| |||||||    
T  16550108 gttatatattattatattgtttatctttttgaactagaattg 16550067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 364 - 471
Target Start/End: Original strand, 4826657 - 4826762
Alignment:
Q  364 agtttaatgttgagacatttgatgttcaggtccttttgtcaactttatgttcagcctgttgtttgtgtaattttcttatctgaagtggtttgaagctatt 463  Q
    ||||| ||||||||| | ||||||||||| || ||||||| |  |||||| || |||||||||| ||| || || ||||||| |||||||||||||||||    
T  4826657 agtttgatgttgagataattgatgttcagttcattttgtcca--ttatgtgcatcctgttgtttttgtcatatttttatctggagtggtttgaagctatt 4826754  T
Q  464 gttatata 471  Q
    ||||||||    
T  4826755 gttatata 4826762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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