View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4620-Insertion-12 (Length: 337)
Name: NF4620-Insertion-12
Description: NF4620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4620-Insertion-12 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 8 - 337
Target Start/End: Complemental strand, 27489654 - 27489324
Alignment:
| Q |
8 |
atatgcatgtttggagtgacatcaattaacccaaaatcacgttgagaatcacggttaagcagaagtttggtgtatcagctttacaatttttacgatgaaa |
107 |
Q |
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| T |
27489654 |
atatgcatgtttgaagtgacatcaattaacccaaaatcacgttgagaatcacggttaggcagaaatttggtgtattaactttagaatttttacgatgaaa |
27489555 |
T |
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| Q |
108 |
gtgcattggggagtggtattggatttccaaacacacgcatagtcttatgttacctttctatgtttcatttcttatttaatgaaaattttacaccaaaaat |
207 |
Q |
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| T |
27489554 |
gtgcattgggaactgatattaggtttccaaacacacgcatagtcttatgttacctttctatgtttcatttcttatttaatgaaaattttacaccaaaaat |
27489455 |
T |
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| Q |
208 |
taactaccatgagaagaaaagaattgaccttg-nnnnnnngtttattgtttacacctttttatgtgttatgttggtgtcattctttatataacaaattca |
306 |
Q |
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| T |
27489454 |
tgactaccatgagaagaaaagaattgaccttgaaaaaaaagtatattgtttacacctttttatgtgttatgttggtgtcatgctttatataaaaaattca |
27489355 |
T |
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| Q |
307 |
taattaatatttataacatagacttctataa |
337 |
Q |
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| T |
27489354 |
taattaatatttataatatacacttctataa |
27489324 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 14 - 140
Target Start/End: Original strand, 25989078 - 25989204
Alignment:
| Q |
14 |
atgtttggagtgacatcaattaacccaaaatcacgttgagaatcacggttaagcagaagtttggtgtatcagctttacaatttttacgatgaaagtgcat |
113 |
Q |
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| T |
25989078 |
atgtttggaatggcatcaattaacccaaaatcacgttgagaatcacagctaagcaaaagcttggtatattagttttagaatttttatggtgaaagtgcat |
25989177 |
T |
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| Q |
114 |
tggggagtggtattggatttccaaaca |
140 |
Q |
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| T |
25989178 |
tgaaaagtggtattgggtttccaaaca |
25989204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 12 - 139
Target Start/End: Complemental strand, 16922265 - 16922141
Alignment:
| Q |
12 |
gcatgtttggagtgacatcaattaacccaaaatcacgttgagaatcacggttaagcagaagtttggtgtatcagctttacaatttttacgatgaaagtgc |
111 |
Q |
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| T |
16922265 |
gcatgtttggaatgacatc---taatccaaaatcacgttcagaatcacgacaaggcagaagcttggtgtattagctttagatttttgacggtgaaagtgt |
16922169 |
T |
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| Q |
112 |
attggggagtggtattggatttccaaac |
139 |
Q |
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| T |
16922168 |
attgggaagtggtattgggtttccaaac |
16922141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 14 - 139
Target Start/End: Complemental strand, 2484594 - 2484469
Alignment:
| Q |
14 |
atgtttggagtgacatcaattaacccaaaatcacgttgagaatcacggttaagcagaagtttggtgtatcagctttacaatttttacgatgaaagtgcat |
113 |
Q |
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||||||||| |||| |||||||||| ||||| |||||||||||||||| | |||| ||||||| | | ||||| |||||| ||| ||| || || |
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| T |
2484594 |
atgtttggaatgacgtcaattaacctaaaattacgttgagaatcacggcaagatagaaacttggtgttttaactttagaattttcacgtgaaaaatgtat |
2484495 |
T |
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| Q |
114 |
tggggagtggtattggatttccaaac |
139 |
Q |
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| T |
2484494 |
tgggaagtggtattggattttcaaac |
2484469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 29 - 139
Target Start/End: Original strand, 21177401 - 21177512
Alignment:
| Q |
29 |
tcaattaacccaaaatcacg-ttgagaatcacggttaagcagaagtttggtgtatcagctttacaatttttacgatgaaagtgcattggggagtggtatt |
127 |
Q |
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|||||||||||||||||||| ||| ||| ||||| | ||||||| | ||||| | ||||| |||||||||| ||||||||||||| | |||| |||| |
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| T |
21177401 |
tcaattaacccaaaatcacggttgtgaagcacggcaaggcagaagctcaatgtattaactttagaatttttacggtgaaagtgcattgtgaagtgctatt |
21177500 |
T |
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| Q |
128 |
ggatttccaaac |
139 |
Q |
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| T |
21177501 |
gggcttccaaac |
21177512 |
T |
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