View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4620-Insertion-13 (Length: 251)
Name: NF4620-Insertion-13
Description: NF4620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4620-Insertion-13 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 8 - 251
Target Start/End: Original strand, 12873093 - 12873336
Alignment:
| Q |
8 |
gttacattgtttatatcctttctatatgtggtcttaatctttttagtcaacgtttgtggtcttaatatcaagaatctcactttcttttacaatacaatca |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12873093 |
gttacattgtttatatcctttctatatgtggtcttaatctttttagtcaacgtttgtggtcttaatatcaagaatctcactttcttttacaatacaatca |
12873192 |
T |
|
| Q |
108 |
gagttgtactgagggataaaaaatcaacaacaatgactagcaaaaggggaaataagcatacactctctgcttctactattcgtttcttcagagttattac |
207 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12873193 |
gagttgtactgagggataaaaattcaacaacaatgactagcaaaaggggaaataagcatacactctctgcttctactattcgtttcttcagagttattac |
12873292 |
T |
|
| Q |
208 |
cccaacaattcttcaagatggaaagcttgtaagttattagtaca |
251 |
Q |
| |
|
| || ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12873293 |
cacaccaattcttcaagatggaaagcttgtaagttattagtaca |
12873336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University