View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4620-Insertion-15 (Length: 134)

Name: NF4620-Insertion-15
Description: NF4620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4620-Insertion-15
NF4620-Insertion-15
[»] chr4 (7 HSPs)
chr4 (75-134)||(5996421-5996480)
chr4 (81-134)||(5457852-5457905)
chr4 (75-134)||(5446576-5446635)
chr4 (24-66)||(5996336-5996378)
chr4 (90-134)||(5435969-5436013)
chr4 (95-134)||(5489113-5489152)
chr4 (84-134)||(5631945-5631995)


Alignment Details
Target: chr4 (Bit Score: 52; Significance: 3e-21; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 3e-21
Query Start/End: Original strand, 75 - 134
Target Start/End: Original strand, 5996421 - 5996480
Alignment:
Q  75 gagtttgtacacaacgaagagtccaagttctctacactcttgtacaaattatcaacacat 134  Q
    |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||    
T  5996421 gagtttgtacaccacgaagagtccaagctctctacactcttgtacaaattatcaacacat 5996480  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.0000000000007
Query Start/End: Original strand, 81 - 134
Target Start/End: Original strand, 5457852 - 5457905
Alignment:
Q  81 gtacacaacgaagagtccaagttctctacactcttgtacaaattatcaacacat 134  Q
    |||||| | ||||||||||||||||| |||||||||||||||||| ||||||||    
T  5457852 gtacaccaagaagagtccaagttctccacactcttgtacaaattaccaacacat 5457905  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 75 - 134
Target Start/End: Original strand, 5446576 - 5446635
Alignment:
Q  75 gagtttgtacacaacgaagagtccaagttctctacactcttgtacaaattatcaacacat 134  Q
    ||||| |||||||| ||||||||||  ||||| |||||||||||||||||| ||||||||    
T  5446576 gagttagtacacaatgaagagtccattttctccacactcttgtacaaattaccaacacat 5446635  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 24 - 66
Target Start/End: Original strand, 5996336 - 5996378
Alignment:
Q  24 gggtgtttttacatgaggaatgttgaggggctggtttggacaa 66  Q
    ||||| || ||||||||||||||||||||||||||||||||||    
T  5996336 gggtggttgtacatgaggaatgttgaggggctggtttggacaa 5996378  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 90 - 134
Target Start/End: Original strand, 5435969 - 5436013
Alignment:
Q  90 gaagagtccaagttctctacactcttgtacaaattatcaacacat 134  Q
    ||||||||||||||| | |||||||||||||||||| ||||||||    
T  5435969 gaagagtccaagttcaccacactcttgtacaaattaccaacacat 5436013  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 95 - 134
Target Start/End: Complemental strand, 5489152 - 5489113
Alignment:
Q  95 gtccaagttctctacactcttgtacaaattatcaacacat 134  Q
    |||||||||||| |||||||||||||||||| ||||||||    
T  5489152 gtccaagttctccacactcttgtacaaattaccaacacat 5489113  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 84 - 134
Target Start/End: Complemental strand, 5631995 - 5631945
Alignment:
Q  84 cacaacgaagagtccaagttctctacactcttgtacaaattatcaacacat 134  Q
    ||||| |||||||||||| |||| ||| |||||||||| ||||||||||||    
T  5631995 cacaatgaagagtccaaggtctcaacagtcttgtacaagttatcaacacat 5631945  T

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