View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4620-Insertion-2 (Length: 1018)
Name: NF4620-Insertion-2
Description: NF4620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4620-Insertion-2 |
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Alignment Details
Target: chr2 (Bit Score: 444; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 367 - 1012
Target Start/End: Complemental strand, 4358974 - 4358345
Alignment:
| Q |
367 |
gaattcccttta-ctataaacaaaggatcacaatttatttatttttacatttaaacgtgaaccaaatcggctgcgacaacatgaacgatctaaagatgga |
465 |
Q |
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| T |
4358974 |
gaattccctttttctataagcaaaggatcgcaatttatttatttttacatttaaacgtgaaccaaatcggctgc-------------atctaaagatgga |
4358888 |
T |
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| Q |
466 |
ttttcttgattcaaacataattaaatgaaactaaaacaaacatagttagagaatgagtaactatattaccagctcttctcacacgagacactaaaaatga |
565 |
Q |
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| T |
4358887 |
ttttcttgattcaaacataattaaatgaaactaaagcaaacatagttagagaatgagtaactatattatcagctcttctcacacgagacactaaaaatga |
4358788 |
T |
|
| Q |
566 |
agaaaaaaaacaactagggctcctttttgtccccnnnnnnnnnnnnttagggctttcacaatcatttagtcactaagcctaaataagaattatcatcaat |
665 |
Q |
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| T |
4358787 |
agaaaacaa-caactagggctcctttttgtccccaaaaaaaaaaa-ttagggctttcacaatcatttagtcactaagcctaaataagaattatcatcaat |
4358690 |
T |
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| Q |
666 |
atacaacttcaaaatcatcgaccaggttgaaccaccctccaccacaatattgcgaaaactcatatcgtgagcaaattgaattgccaatcgaaattcaaga |
765 |
Q |
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| T |
4358689 |
atacaacttcaaaatcatagaccaggttgaaccaccctccaccacaatattgcgaaaactcatatcgtgagcaaattgaattgccaatcgaaattcaaga |
4358590 |
T |
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| Q |
766 |
gcttcaacaatattagtatcacgacaaaaccttacgagtctctaattatagctcctacaccccatttgttatcaacctgtccggatgcttc-atgttttg |
864 |
Q |
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| T |
4358589 |
gcttcaacaatattagtatcacgacaaaaccttacgagtctctaattatagctcctacaccccatttgttatcaacctgtcc-gatgcttcaatgttttg |
4358491 |
T |
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| Q |
865 |
aggaaagatgtgggatgagtactccaagttagagggggaagagattatataatccttaagaacactcacgttggctaaggatcatgaacttctttagtgt |
964 |
Q |
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| T |
4358490 |
aagaaagatgtgggatgagtactccaag-tagagggggaagagattatataatccttaagaacactcacgtt-gctaaggattatg-acttctttagtgt |
4358394 |
T |
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| Q |
965 |
attatgagt-aatggtccaattattaggtcttggaattgtagggtcata |
1012 |
Q |
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| T |
4358393 |
attatgagtaaatgttcaatttattagttcttgaaattgtagggtcata |
4358345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 294; E-Value: 1e-164
Query Start/End: Original strand, 8 - 305
Target Start/End: Complemental strand, 4359333 - 4359036
Alignment:
| Q |
8 |
atatataaattaaactcaattcttattattaacatcatcatcaacctcgtacatatatatcctattcctaatacgtacaataagttggtgtcaaaaatta |
107 |
Q |
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| T |
4359333 |
atatataaattaaactcaattcttattattaacatcatcatcaacctcgtacatatatatcctattcctaatacgtacaataagttggtgtcaaaaatta |
4359234 |
T |
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| Q |
108 |
cgaataagttagttggtatcaaatgtttctattatgcacaactgtcaacgaggaatgcacctaattaagaaaaaagagttggaattaatttgtgaaattc |
207 |
Q |
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| T |
4359233 |
cgaataagttagttggtatcaaatgttcctattatgcacaactgtcaacgaggaatgcacctaattaagaaaaaagagttggaattaatttgtgaaattc |
4359134 |
T |
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| Q |
208 |
aaagcttcaacaattgcatagttgtttagacaggcttttgcattagaaaaagttggagcggcaaccgaagtagatgccaatgagacatcaagttttgt |
305 |
Q |
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| T |
4359133 |
aaagcttcaacaattgcatagttgtttagacaggcttttgcattagaaaaagttggagcggcaaccgaagtagatgccaatgagacatcaagttttgt |
4359036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 703 - 781
Target Start/End: Complemental strand, 45338882 - 45338804
Alignment:
| Q |
703 |
tccaccacaatattgcgaaaactcatatcgtgagcaaattgaattgccaatcgaaattcaagagcttcaacaatattag |
781 |
Q |
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||||| ||||| || | |||||||||||| | ||||||||||||||||| ||||| ||||||||||| |||| |||| |
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| T |
45338882 |
tccacgacaatgtttcaaaaactcatatcataggcaaattgaattgccaactgaaatccaagagcttcagcaatgttag |
45338804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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