View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4620-Insertion-5 (Length: 952)
Name: NF4620-Insertion-5
Description: NF4620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4620-Insertion-5 |
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Alignment Details
Target: chr3 (Bit Score: 739; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 739; E-Value: 0
Query Start/End: Original strand, 8 - 851
Target Start/End: Complemental strand, 39410731 - 39409892
Alignment:
| Q |
8 |
attacctctttaaatctaatgatattgggatgcttcaaggacctatgatttataatctccctttgaacatgctcatcaatctgcaacatgaaacattgaa |
107 |
Q |
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| T |
39410731 |
attacctctttaaatctaatgatattgggatgcttcaaggacctatgatttataatctccctttgaacatgctcatcaatctgcaacatgaaacattgaa |
39410632 |
T |
|
| Q |
108 |
ttcagtcacatgaagttactaaccaatcaacgtaagaccaaccaaagtacgaggtaacatactttataggcctaagacaaagacaacatgcatatataag |
207 |
Q |
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| T |
39410631 |
ttcagtcacatgaagttactaaccaatcaacgtaagaccaaccaaagtacgaggtaacatactttataggcctaagacaaagacaacatgcatatataag |
39410532 |
T |
|
| Q |
208 |
caaagagatgaagttaaaaacaagagcacaaaccttaaggcctctctcaatgattttgacagcatatagtttaccactttgtctctcccttacaagcttt |
307 |
Q |
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| T |
39410531 |
caaagagatgaagttaaaaacaagagcacaaaccttaaggcctctctcaatgattttgacagcatatagtttaccactttgtctctcccttacaagcttt |
39410432 |
T |
|
| Q |
308 |
gctaccccaaaatttcctgacccaatacctttaataatctcataacgttcttccattctcgtgacgtagtacaattaatattacacaatttacaacagcc |
407 |
Q |
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| T |
39410431 |
gctaccccaaaatttcctgacccaatacctttaataatctcataacgttcttccattctcgtgacgtagtacaattaatattacacaatttacaacagcc |
39410332 |
T |
|
| Q |
408 |
aagtgttgttttttgaagaatatatgaactaccaagtagcaaattgaaaaatcttctctc-nnnnnnnnatgacctcaaattttcaattggaaaattaaa |
506 |
Q |
| |
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| T |
39410331 |
aagtgttgttttttgaagaatatatgaactaccaagtagcaaattgaaaaatattctctctttttttttatgacctcaaattttcaattggaaaattaaa |
39410232 |
T |
|
| Q |
507 |
gttaaagatggctggttttgctgacatttatatcagtgttgctattacaacaagtggaatttaaatatgccttgagaaagagggctcaaacagaaatagc |
606 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39410231 |
gttaaagatggctggttttgctgacatttatatcagtgttgctattacaacaagtggaatttaaatatgccttgagaaagagggctcaaacagaaatagc |
39410132 |
T |
|
| Q |
607 |
ataaatcccacgtggtcagaatctactggtccaaatttgtactaactaaaaacaagttggtccgacgtggcgatttgattgcttttaatggagaaactat |
706 |
Q |
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| T |
39410131 |
ataaatcccacgtggtcagaatctactggtccaaatttgtactaactaaaaacaagttggtccgacgtggcgatttgattgcttttaatggagaaactat |
39410032 |
T |
|
| Q |
707 |
aattttatatgaccgtccctcgcaacatcttaaaattaattcatctgtctcatgcatctatgaatatttgatggagctttgtttgannnnnnnnnnngtt |
806 |
Q |
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| T |
39410031 |
aattttatatgaccgtcccttgcaacatcttaaaattaattcatctgtct----catctatgaatatttgatggagctttgtttgattttttttttt-tt |
39409937 |
T |
|
| Q |
807 |
gtcgatagacaaaacaacaaataatcattgaaagctacacacaag |
851 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
39409936 |
atcgatcgacaaaacaacaaataatcattgaaagctacacacaag |
39409892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 852 - 907
Target Start/End: Complemental strand, 39409868 - 39409813
Alignment:
| Q |
852 |
gaccacaacgtttaatctaacaattttgatatttttaacgattgagttaagatttt |
907 |
Q |
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| T |
39409868 |
gaccacaacgtttagtctaacaatttttatatttttaatgatcgagttaagatttt |
39409813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 4e-25; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 10 - 89
Target Start/End: Complemental strand, 37601944 - 37601865
Alignment:
| Q |
10 |
tacctctttaaatctaatgatattgggatgcttcaaggacctatgatttataatctccctttgaacatgctcatcaatct |
89 |
Q |
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| T |
37601944 |
tacctctttaaatctaacaatattgggatgcttcaatgacctatgatttataatctccctttgcacgtgctcatcaatct |
37601865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 530 - 601
Target Start/End: Original strand, 37546424 - 37546498
Alignment:
| Q |
530 |
acatttatatcagtgttgctattacaacaagtggaatttaaatatgcctt----gagaaagagggctcaaacagaa |
601 |
Q |
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| T |
37546424 |
acatttacatcagtgttgttattacaacaagtggaatttaaa-atgccttcatatagaaagagggctcaatcagaa |
37546498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 862 - 899
Target Start/End: Original strand, 31643058 - 31643095
Alignment:
| Q |
862 |
tttaatctaacaattttgatatttttaacgattgagtt |
899 |
Q |
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| T |
31643058 |
tttaatctaacaattttgatatttttatcggttgagtt |
31643095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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