View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4620-Insertion-7 (Length: 925)
Name: NF4620-Insertion-7
Description: NF4620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4620-Insertion-7 |
 | |
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| [»] chr8 (11 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 566; Significance: 0; HSPs: 11)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 566; E-Value: 0
Query Start/End: Original strand, 328 - 925
Target Start/End: Original strand, 37182782 - 37183379
Alignment:
| Q |
328 |
tatagcatgtatagtaggaagagaataatcaatttcctacaaattttctaacagatgttcaaccaaccagatagtgattaaaagcacaactacttcaaga |
427 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
37182782 |
tatagcatctatagtaggaagagaataatcaatttcctacaaattttctaacagatgttcaaccaaccagatggtgattaaaagcacaactacttcaaga |
37182881 |
T |
|
| Q |
428 |
gcaacaaagcataacaacacaactacttcaagaacctgactcaatgctcacctggggcgtttttactatgttcagcagaaattcaatcttcccttatacc |
527 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37182882 |
gcaacaaagcataacaacacaactacttcaagaacctgactcaatgctcacctggggtgtttttactatgttcagcagaaattcaatcttcccttatacc |
37182981 |
T |
|
| Q |
528 |
ttataagaggaagcgtgggactcataaaacatgattgttaatttgttttaaataaatataccacttatctcatgcaagcatttttaaacatcactcagcc |
627 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37182982 |
ttataagaggaagcgtgggactccaaaaacatgattgttaatttgttttaaataaatataccacttatctcatgcaagcatttttaaacatcactcagcc |
37183081 |
T |
|
| Q |
628 |
acattcatatggaaattcaaatcaccgtgcataatatgtgtaaccaaattcaatgagtgattggttaagtcatgcatgacttgggagacaacatagtctt |
727 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37183082 |
acattcatatggaaattcaaatcaccgtgcataatacgtgtaaccaaattcaatgagtaattggttaagtcatgcatgacttgggagacaacatagtctt |
37183181 |
T |
|
| Q |
728 |
aaatgaaaaaagttataaatgcagcaagcaatcctaaaacaaaccatctaccactgagcatttcagaaagcgtttgactttagatttagcatacccaact |
827 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37183182 |
aaatgaaaaaagttataaatgcaacaagcaatcctaaaacaaaccatctaccactgagcatttcagaaagcgtttgactttagatttagcatacccaact |
37183281 |
T |
|
| Q |
828 |
gttgtagatattgtggcagactcttccttcgctatggccaatctctgtttgcaagcagtctctttatcacatatttctctcaacctctctgatgcttc |
925 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37183282 |
gttgtagatattgtggcagactcttccttcgctatggccaatctctgtttgcaagcagtctctttatcacatatttctctcaacctctctgatgcttc |
37183379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 566; E-Value: 0
Query Start/End: Original strand, 328 - 925
Target Start/End: Original strand, 37193914 - 37194511
Alignment:
| Q |
328 |
tatagcatgtatagtaggaagagaataatcaatttcctacaaattttctaacagatgttcaaccaaccagatagtgattaaaagcacaactacttcaaga |
427 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
37193914 |
tatagcatctatagtaggaagagaataatcaatttcctacaaattttctaacagatgttcaaccaaccagatggtgattaaaagcacaactacttcaaga |
37194013 |
T |
|
| Q |
428 |
gcaacaaagcataacaacacaactacttcaagaacctgactcaatgctcacctggggcgtttttactatgttcagcagaaattcaatcttcccttatacc |
527 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37194014 |
gcaacaaagcataacaacacaactacttcaagaacctgactcaatgctcacctggggtgtttttactatgttcagcagaaattcaatcttcccttatacc |
37194113 |
T |
|
| Q |
528 |
ttataagaggaagcgtgggactcataaaacatgattgttaatttgttttaaataaatataccacttatctcatgcaagcatttttaaacatcactcagcc |
627 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37194114 |
ttataagaggaagcgtgggactccaaaaacatgattgttaatttgttttaaataaatataccacttatctcatgcaagcatttttaaacatcactcagcc |
37194213 |
T |
|
| Q |
628 |
acattcatatggaaattcaaatcaccgtgcataatatgtgtaaccaaattcaatgagtgattggttaagtcatgcatgacttgggagacaacatagtctt |
727 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37194214 |
acattcatatggaaattcaaatcaccgtgcataatacgtgtaaccaaattcaatgagtaattggttaagtcatgcatgacttgggagacaacatagtctt |
37194313 |
T |
|
| Q |
728 |
aaatgaaaaaagttataaatgcagcaagcaatcctaaaacaaaccatctaccactgagcatttcagaaagcgtttgactttagatttagcatacccaact |
827 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37194314 |
aaatgaaaaaagttataaatgcaacaagcaatcctaaaacaaaccatctaccactgagcatttcagaaagcgtttgactttagatttagcatacccaact |
37194413 |
T |
|
| Q |
828 |
gttgtagatattgtggcagactcttccttcgctatggccaatctctgtttgcaagcagtctctttatcacatatttctctcaacctctctgatgcttc |
925 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37194414 |
gttgtagatattgtggcagactcttccttcgctatggccaatctctgtttgcaagcagtctctttatcacatatttctctcaacctctctgatgcttc |
37194511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 7 - 307
Target Start/End: Original strand, 37182411 - 37182712
Alignment:
| Q |
7 |
aaaaggtatcttaattttcctgtgaatatttcctaaagcacaattaatggatggacttgcaaaatgtgacaaacctatctgtgaaaactaaagaaaa-ta |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
37182411 |
aaaaggtatcttaattttcctgtgaatatttcctaaagcacaattaatggatggacttgcaaaatgtgacaaacctatctgtgaaaactaaagaaaacta |
37182510 |
T |
|
| Q |
106 |
tcgcactcaaattcaagctttagggccagacattgttgatggatttattctcttggtggtaaaccaatatcatgctcttctctcactaagattactgtct |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37182511 |
tcgcactcaaattcaagctttagggccagacattgttgatggatttattctcctggtggtaaaccaatatcatgctcttctctcactaagattactgtct |
37182610 |
T |
|
| Q |
206 |
aatgccattagttctctccagggtatctagatatagtggtatggttatggaccaaaaacatatagatgacactaattaataaatcatgctatactttgag |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37182611 |
aatgccattagttctctccagggtatctagatatagtggtatggttatggaccaaaaacatatagatgacactaattaataaatcatgctatactttgag |
37182710 |
T |
|
| Q |
306 |
tt |
307 |
Q |
| |
|
|| |
|
|
| T |
37182711 |
tt |
37182712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 7 - 307
Target Start/End: Original strand, 37193543 - 37193844
Alignment:
| Q |
7 |
aaaaggtatcttaattttcctgtgaatatttcctaaagcacaattaatggatggacttgcaaaatgtgacaaacctatctgtgaaaactaaagaaaa-ta |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
37193543 |
aaaaggtatcttaattttcctgtgaatatttcctaaagcacaattaatggatggacttgcaaaatgtgacaaacctatctgtgaaaactaaagaaaacta |
37193642 |
T |
|
| Q |
106 |
tcgcactcaaattcaagctttagggccagacattgttgatggatttattctcttggtggtaaaccaatatcatgctcttctctcactaagattactgtct |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37193643 |
tcgcactcaaattcaagctttagggccagacattgttgatggatttattctcctggtggtaaaccaatatcatgctcttctctcactaagattactgtct |
37193742 |
T |
|
| Q |
206 |
aatgccattagttctctccagggtatctagatatagtggtatggttatggaccaaaaacatatagatgacactaattaataaatcatgctatactttgag |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37193743 |
aatgccattagttctctccagggtatctagatatagtggtatggttatggaccaaaaacatatagatgacactaattaataaatcatgctatactttgag |
37193842 |
T |
|
| Q |
306 |
tt |
307 |
Q |
| |
|
|| |
|
|
| T |
37193843 |
tt |
37193844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 761 - 902
Target Start/End: Original strand, 37202286 - 37202427
Alignment:
| Q |
761 |
ctaaaacaaaccatctaccactgagcatttcagaaagcgtttgactttagatttagcatacccaactgttgtagatattgtggcagactcttccttcgct |
860 |
Q |
| |
|
||||| ||||||||| |||||||||||||||||||||| || ||||||||||| ||||||||||||||| ||||||| | || |||||| ||||||||| |
|
|
| T |
37202286 |
ctaaatcaaaccatcaaccactgagcatttcagaaagcacttaactttagatttggcatacccaactgttatagatatcgcggtagactcatccttcgct |
37202385 |
T |
|
| Q |
861 |
atggccaatctctgtttgcaagcagtctctttatcacatatt |
902 |
Q |
| |
|
| |||||||||| |||||||||||| |||| | |||||||| |
|
|
| T |
37202386 |
ctagccaatctctctttgcaagcagtttcttcagcacatatt |
37202427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 768 - 905
Target Start/End: Original strand, 37180156 - 37180293
Alignment:
| Q |
768 |
aaaccatctaccactgagcatttcagaaagcgtttgactttagatttagcatacccaactgttgtagatattgtggcagactcttccttcgctatggcca |
867 |
Q |
| |
|
|||||||| | |||||||| |||||||||||| ||||||||||| | ||||| ||||||| |||||||| || |||||| | ||| ||| || || |
|
|
| T |
37180156 |
aaaccatccatcactgagcgtttcagaaagcgactgactttagatgtgcaataccgaactgtttgagatattgaggtagactcattctttgctgcggtca |
37180255 |
T |
|
| Q |
868 |
atctctgtttgcaagcagtctctttatcacatatttct |
905 |
Q |
| |
|
|||| | ||||||||||||||||||| ||||||||||| |
|
|
| T |
37180256 |
atctttctttgcaagcagtctctttaacacatatttct |
37180293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 177 - 240
Target Start/End: Original strand, 37201587 - 37201650
Alignment:
| Q |
177 |
atgctcttctctcactaagattactgtctaatgccattagttctctccagggtatctagatata |
240 |
Q |
| |
|
|||||||||| |||| |||| ||||| ||||||||||||||||||||||||||| |||||||| |
|
|
| T |
37201587 |
atgctcttctatcacaaagaaaactgtgtaatgccattagttctctccagggtatgtagatata |
37201650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 429 - 464
Target Start/End: Original strand, 37211303 - 37211338
Alignment:
| Q |
429 |
caacaaagcataacaacacaactacttcaagaacct |
464 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
37211303 |
caacaaagcataacaacacaactacttcaagaacct |
37211338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 430 - 613
Target Start/End: Original strand, 37216909 - 37217086
Alignment:
| Q |
430 |
aacaaagcataacaacacaactacttcaagaacctgactcaatgctcacctggggcgtttttactatgttcagcagaaattcaatcttcccttatacctt |
529 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |||||||||||| | ||||||||| | ||| ||||||||| ||| |||||| | |||| |
|
|
| T |
37216909 |
aacaaagcataaaaacacaactacttcaagaac----ctcaatgctcac---tagtgtttttactttattctgcagaaatttaattttccctcacacct- |
37217000 |
T |
|
| Q |
530 |
ataagaggaagcgtggg---actcataaaacatgattgttaatttgttttaaataaatataccacttatctcatgcaagcattttta |
613 |
Q |
| |
|
| || ||||| ||||| |||| | |||||||| || |||||||||| || |||||||||||| |||||||||| |||||||| |
|
|
| T |
37217001 |
-ttagtggaagagtgggagtactccaataacatgatggtaaatttgtttttaaaaaatataccactcatctcatgcagacattttta |
37217086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 555 - 614
Target Start/End: Original strand, 37201993 - 37202053
Alignment:
| Q |
555 |
aacatgattgttaatttgttttaaa-taaatataccacttatctcatgcaagcatttttaa |
614 |
Q |
| |
|
|||||||| |||||||| ||||||| |||||||| |||| ||||||||||| ||||||||| |
|
|
| T |
37201993 |
aacatgatggttaatttattttaaaataaatatagcactcatctcatgcaaacatttttaa |
37202053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 627 - 661
Target Start/End: Original strand, 37211461 - 37211495
Alignment:
| Q |
627 |
cacattcatatggaaattcaaatcaccgtgcataa |
661 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| |
|
|
| T |
37211461 |
cacattcatatggaaattcaaatcaccatgcataa |
37211495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 2e-18; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 437 - 614
Target Start/End: Original strand, 7527026 - 7527198
Alignment:
| Q |
437 |
cataacaacacaactacttcaagaacctgactcaatgctcacctggggcgtttttactatgttcagcagaaattcaatcttcccttataccttataagag |
536 |
Q |
| |
|
||||| |||| ||||||||||||||||| |||||||||| | | | ||||||||| ||||| ||||||||| ||| ||||| | |||||| | ||| |
|
|
| T |
7527026 |
cataagaacataactacttcaagaacct----caatgctcac-tagagtgtttttactttgttctgcagaaatttaattttcccacacaccttagaggag |
7527120 |
T |
|
| Q |
537 |
gaagcgtgggactcataaaacatgattgttaatttgttttaaataaatataccacttatctcatgcaagcatttttaa |
614 |
Q |
| |
|
|||| ||| |||| || ||||| || |||||||||||||||||||||||||||| | ||||||||| |||| |||| |
|
|
| T |
7527121 |
gaagagtgatactcctataacatcatggttaatttgttttaaataaatataccacacacctcatgcaaacattattaa |
7527198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 534 - 614
Target Start/End: Complemental strand, 414914 - 414835
Alignment:
| Q |
534 |
gaggaagcgtgggactcataaaacatgattgttaatttgttttaaataaatataccacttatctcatgcaagcatttttaa |
614 |
Q |
| |
|
||||||| ||||||||| || |||| || |||||||||||| |||||||||||||| | ||||||||||| ||||||||| |
|
|
| T |
414914 |
gaggaagagtgggactcctataacacaatggttaatttgttt-aaataaatataccaatcatctcatgcaaacatttttaa |
414835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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