View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4620-Insertion-8 (Length: 769)

Name: NF4620-Insertion-8
Description: NF4620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4620-Insertion-8
NF4620-Insertion-8
[»] chr3 (1 HSPs)
chr3 (9-769)||(38712362-38713115)


Alignment Details
Target: chr3 (Bit Score: 698; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 698; E-Value: 0
Query Start/End: Original strand, 9 - 769
Target Start/End: Complemental strand, 38713115 - 38712362
Alignment:
Q  9 cggtcacgtgcattattaaattaacgtgaggcattcttatatcatacttgtgttgcaactcggactacaactattttcttcaaaatattagggactggtg 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38713115 cggtcacgtgcattattaaattaacgtgaggcattcttatatcatacttgtgttgcaactcggactacaactattttcttcaaaatattagggactggtg 38713016  T
Q  109 cataaacatgatattctagcaaggcaataaacaaaacaaagttattccaatgaactaaaacttgctgttcttgcgaaaacaaatgacccaaaacttgctt 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |||||||||||||||||||||||||    
T  38713015 cataaacatgatattctagcaaggcaataaacaaaacaaagttattccaatgaactaaaacttgctgttattaccaaaacaaatgacccaaaacttgctt 38712916  T
Q  209 gtatgataattaacagaatagtcccaaatcagtctcattatacaagtattagttattgtaaatttgtaaccaaactttttggtcaagaatcaagatagtt 308  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||       |||||    
T  38712915 gtatgataattaacagaatagtcccaaatcagtctcattatataagtattagttattgtaaatttgtaaccaaactttttggtcaaga-------tagtt 38712823  T
Q  309 aacttaccattcggtgtctactctcctcttgatgaactcatccacaacctgcaaataataatgttttcccatcataaagacttggacgcatcaaactgaa 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38712822 aacttaccattcggtgtctactctcctcttgatgaactcatccacaacctgcaaataataatgttttcccatcataaagacttggacgcatcaaactgaa 38712723  T
Q  409 agaacagcatataatagccatatataatttgagcactatttgcacaaatgttgctgattgtccacaccagaaaactaattacgctacataatttcacgat 508  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38712722 agaacagcatataatagccatatataatttgagcactatttgcacaaatgttgctgattgtccacaccagaaaactaattacgctacataatttcacgat 38712623  T
Q  509 aagtatgacaaactagaatttattagtttaatgatgaaaaataaaattgattagtctgtcaatcactttggctctgagctcatctgcaagttctttttgc 608  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38712622 aagtatgacaaactagaatttattagtttaatgatgaaaaataaaattgattagtctgtcaatcactttggctctgagctcatctgcaagttctttttgc 38712523  T
Q  609 ctggtgagacttggaggtgggtccccttttctgaggcaggcaccgtagaccacagatctaaacatacatctaccatctcctggtattcctgcaacaacnn 708  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  38712522 ctggtgagacttggaggtgggtccccttttctgaggcaggcaccgtagaccacagatctaaacatacatctaccatctcctggtattcctgcaacaacaa 38712423  T
Q  709 nnnnncgtttcaaaattaagtagaatcagaaaaattaataataagctgcaaagcacgtgca 769  Q
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38712422 aaaaacgtttcaaaattaagtagaatcagaaaaattaataataagctgcaaagcacgtgca 38712362  T

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