View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4620-Insertion-9 (Length: 730)

Name: NF4620-Insertion-9
Description: NF4620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4620-Insertion-9
NF4620-Insertion-9
[»] chr6 (11 HSPs)
chr6 (7-412)||(9887182-9887590)
chr6 (569-730)||(9886784-9886945)
chr6 (409-541)||(9886988-9887120)
chr6 (611-730)||(9866551-9866670)
chr6 (611-730)||(9873760-9873878)
chr6 (328-401)||(9886915-9886988)
chr6 (465-530)||(9887117-9887182)
chr6 (195-287)||(9901621-9901713)
chr6 (611-726)||(9873185-9873299)
chr6 (539-573)||(9887131-9887165)
chr6 (684-730)||(9867138-9867184)
[»] chr8 (1 HSPs)
chr8 (611-725)||(40956613-40956727)
[»] chr3 (3 HSPs)
chr3 (422-538)||(4328607-4328717)
chr3 (272-401)||(4328475-4328604)
chr3 (104-275)||(4327324-4327496)
[»] chr4 (3 HSPs)
chr4 (422-538)||(50747355-50747465)
chr4 (272-401)||(50747468-50747597)
chr4 (104-275)||(50748576-50748748)


Alignment Details
Target: chr6 (Bit Score: 371; Significance: 0; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 7 - 412
Target Start/End: Complemental strand, 9887590 - 9887182
Alignment:
Q  7 actttcatggttaattaaggtactagaaatcaattctttgggtctttaggtatgactatcttctttacttgagatggttgagatcagaaatggtaggttc 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9887590 actttcatggttaattaaggtactagaaatcaattctttgggtctttaggtatgactatcttctttacttgagatggttgagatcagaaatggtaggttc 9887491  T
Q  107 ttcatccttggtttcttccaaatgcttgacagaccttttgtttggaaatttaaactttggttgggactagttaatgtgtcctgattatgtggaggtggaa 206  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  9887490 ttcatccttggtttcttccaaatgtttgacagaccttttgtttggaaatttaaactgtggttgggactaattaatgtgtcctgattatgtggaggtggaa 9887391  T
Q  207 aaccaggtcctactatagactttggtaatggtatcttattgcaattttgcgccagctctagaagcacctcacgacagggtggttgcgagaagatgaagtt 306  Q
    |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9887390 aaccaggtcctactatagactttggtaatgttatcttgttgcaattttgcgccagctctagaagcacctcacgacagggtggttgcgagaagatgaagtt 9887291  T
Q  307 a---acctgggattgaatcgcaagcttaacataatgaatatcaattgcagacttgctagcatgctctaaataaacttgagtgtctgttaacacatcaata 403  Q
    |   ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9887290 aattacctgggattgaatcacaagcttaacataatgaatatcaattgcagacttgctagcatgctctaaataaacttgagtgtctgttaacacatcaata 9887191  T
Q  404 acttatcaa 412  Q
    |||||||||    
T  9887190 acttatcaa 9887182  T

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Target: chr6; HSP #2
Raw Score: 138; E-Value: 9e-72
Query Start/End: Original strand, 569 - 730
Target Start/End: Complemental strand, 9886945 - 9886784
Alignment:
Q  569 caagtctgcaattgatattcctgatgttaagtctgcaattgatttccatcgaattcaaatgaatgaaaatgatttattttgttttttcctcttccggaat 668  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||||||||||||||    
T  9886945 caagtctgcaattgatattcatgatgttaagtctgcaattgatttccatcgaattgaaaggaatgaaaatgatttattctgttttttcctcttccggaat 9886846  T
Q  669 tcctaaccggttggtcaatgggtttagcatccaccaatggtggctcctcttcttctttctcc 730  Q
    | |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  9886845 ttctaaccggttcgtcaatgggtttagcatccaccaatggtggctcctcttcttctttctcc 9886784  T

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Target: chr6; HSP #3
Raw Score: 113; E-Value: 8e-57
Query Start/End: Original strand, 409 - 541
Target Start/End: Complemental strand, 9887120 - 9886988
Alignment:
Q  409 tcaacaaagacttgaatatgccaagggatgcaaagattgtgcaatctttaaatttattgaaatcaatgggtgtggaagaatatgaaccttgtgttataca 508  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |||||||||    
T  9887120 tcaacaaagacttgaatatgccaagggatgaaaagattgtgcaatctttaaatttgttgaaatcaatgggtgtgaaagaatatgaaccttctgttataca 9887021  T
Q  509 caagtttctcgagcgatggtatcgctatgttgt 541  Q
    |||||||||||||| ||||||||||||||||||    
T  9887020 caagtttctcgagctatggtatcgctatgttgt 9886988  T

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Target: chr6; HSP #4
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 611 - 730
Target Start/End: Original strand, 9866551 - 9866670
Alignment:
Q  611 tttccatcgaattcaaatgaatgaaaatgatttattttgttttttcctcttccggaattcctaaccggttggtcaatgggtttagcatccaccaatggtg 710  Q
    ||||||| ||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |    
T  9866551 tttccattgaattcaaaggaatgaaaatgatttattctgttttatcctcttccggaattcctaaccggttcgtcaatgggtttagcatcctccaatggcg 9866650  T
Q  711 gctcctcttcttctttctcc 730  Q
    ||||||||||||||||||||    
T  9866651 gctcctcttcttctttctcc 9866670  T

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Target: chr6; HSP #5
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 611 - 730
Target Start/End: Complemental strand, 9873878 - 9873760
Alignment:
Q  611 tttccatcgaattcaaatgaatgaaaatgatttattttgttttttcctcttccggaattcctaaccggttggtcaatgggtttagcatccaccaatggtg 710  Q
    ||||||||||||||||| |||||||||||||||  ||| |||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||| |    
T  9873878 tttccatcgaattcaaaggaatgaaaatgattttattt-ttttttcctctttcggaattcctaaccggttcgtcaatgggtttagcatcctccaatggcg 9873780  T
Q  711 gctcctcttcttctttctcc 730  Q
    |||||||||||| |||||||    
T  9873779 gctcctcttcttatttctcc 9873760  T

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Target: chr6; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 328 - 401
Target Start/End: Original strand, 9886915 - 9886988
Alignment:
Q  328 cttaacataatgaatatcaattgcagacttgctagcatgctctaaataaacttgagtgtctgttaacacatcaa 401  Q
    |||||||| |||||||||||||||||||||||||||||||||| |||| ||||| |  ||||||||||||||||    
T  9886915 cttaacatcatgaatatcaattgcagacttgctagcatgctctgaatacacttgggcatctgttaacacatcaa 9886988  T

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Target: chr6; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 465 - 530
Target Start/End: Original strand, 9887117 - 9887182
Alignment:
Q  465 ttgaaatcaatgggtgtggaagaatatgaaccttgtgttatacacaagtttctcgagcgatggtat 530  Q
    ||||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||| |||||||    
T  9887117 ttgaagtcaataggtgtggaagaatatgaaccttgtgttatacacaagtttctcaagctatggtat 9887182  T

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Target: chr6; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 195 - 287
Target Start/End: Complemental strand, 9901713 - 9901621
Alignment:
Q  195 gtggaggtggaaaaccaggtcctactatagactttggtaatggtatcttattgcaattttgcgccagctctagaagcacctcacgacagggtg 287  Q
    ||||| ||||||||||| ||||| || |||||||||||||||||||||| ||||||||||| || | ||| ||||| |||||| |||||||||    
T  9901713 gtggaagtggaaaaccaagtcctgctgtagactttggtaatggtatcttgttgcaattttgtgctacctccagaagtacctcaagacagggtg 9901621  T

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Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 611 - 726
Target Start/End: Original strand, 9873185 - 9873299
Alignment:
Q  611 tttccatcgaattcaaatgaatgaaaatgatttattttgttttttcctcttccggaattcctaaccggttggtcaatgggtttagcatccaccaatggtg 710  Q
    |||| |||||||| ||| ||||||||||||||||||||| |||||||| ||||||||  |||||| | || | ||||||||||| ||| |  ||||||      
T  9873185 tttctatcgaatttaaaagaatgaaaatgatttattttg-tttttcctattccggaaaccctaactgtttcgccaatgggtttaacattcttcaatggca 9873283  T
Q  711 gctcctcttcttcttt 726  Q
    ||| ||||||||||||    
T  9873284 gctgctcttcttcttt 9873299  T

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Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 539 - 573
Target Start/End: Original strand, 9887131 - 9887165
Alignment:
Q  539 tgtggaagaatatgaaccttgtgttatacacaagt 573  Q
    |||||||||||||||||||||||||||||||||||    
T  9887131 tgtggaagaatatgaaccttgtgttatacacaagt 9887165  T

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Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 684 - 730
Target Start/End: Complemental strand, 9867184 - 9867138
Alignment:
Q  684 caatgggtttagcatccaccaatggtggctcctcttcttctttctcc 730  Q
    ||||||||||||||||| ||||||| || | ||||||||||||||||    
T  9867184 caatgggtttagcatcctccaatggcggatgctcttcttctttctcc 9867138  T

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Target: chr8 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 611 - 725
Target Start/End: Complemental strand, 40956727 - 40956613
Alignment:
Q  611 tttccatcgaattcaaatgaatgaaaatgatttattttgttttttcctcttccggaattcctaaccggttggtcaatgggtttagcatccaccaatggtg 710  Q
    |||||||| |||||||| |||||||||||||| ||||||||||||||||||| ||||  |||||| |||| | ||||||||||||||||| |||| || |    
T  40956727 tttccatcaaattcaaaggaatgaaaatgattgattttgttttttcctcttctggaaaccctaactggtttgccaatgggtttagcatcctccaaaggcg 40956628  T
Q  711 gctcctcttcttctt 725  Q
    |||||||||||||||    
T  40956627 gctcctcttcttctt 40956613  T

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Target: chr3 (Bit Score: 66; Significance: 9e-29; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 422 - 538
Target Start/End: Complemental strand, 4328717 - 4328607
Alignment:
Q  422 gaatatgccaagggatgcaaagattgtgcaatctttaaatttattgaaatcaatgggtgtggaagaatatgaaccttgtgttatacacaagtttctcgag 521  Q
    |||||||||||||||||||||||||||||| |||||       ||||||||||||||||||||||||||||||||| |||||||| ||||||| || |||    
T  4328717 gaatatgccaagggatgcaaagattgtgcagtctttg------ttgaaatcaatgggtgtggaagaatatgaacctcgtgttataaacaagttccttgag 4328624  T
Q  522 cgatggtatcgctatgt 538  Q
    | |||||||||||||||    
T  4328623 ctatggtatcgctatgt 4328607  T

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Target: chr3; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 272 - 401
Target Start/End: Original strand, 4328475 - 4328604
Alignment:
Q  272 acctcacgacagggtggttgcgagaagatgaagttaacctgggattgaatcgcaagcttaacataatgaatatcaattgcagacttgctagcatgctcta 371  Q
    |||||||||  ||||||||| |||||| ||||||| |||||||||||||| || |||||||||| || || ||||||||||| ||||| ||||||||||     
T  4328475 acctcacgagggggtggttgagagaagctgaagttgacctgggattgaatggccagcttaacatcatcaacatcaattgcaggcttgccagcatgctctg 4328574  T
Q  372 aataaacttgagtgtctgttaacacatcaa 401  Q
    |||| || || |  ||||||||||||||||    
T  4328575 aatacacctgggcatctgttaacacatcaa 4328604  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 104 - 275
Target Start/End: Original strand, 4327324 - 4327496
Alignment:
Q  104 ttcttcatccttggtttcttccaaatgcttgacagaccttttgtttggaaatttaaactt-tggttgggactagttaatgtgtcctgattatgtggaggt 202  Q
    |||||||||||  |||||||||| | | | |||||||||||||||||||| |  |||||  | |||||||  | | |||||||| ||||   ||| | ||    
T  4327324 ttcttcatcctcagtttcttccataggttcgacagaccttttgtttggaattgcaaactggtagttgggagcaatcaatgtgtcttgatcgggtgaaagt 4327423  T
Q  203 ggaaaaccaggtcctactatagactttggtaatggtatcttattgcaattttgcgccagctctagaagcacct 275  Q
    ||||| ||||| ||| |||||||||| || ||||||||||| |||| |||||| || ||||||||||||||||    
T  4327424 ggaaacccaggccctgctatagacttcggcaatggtatcttgttgcgattttgtgctagctctagaagcacct 4327496  T

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Target: chr4 (Bit Score: 62; Significance: 2e-26; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 422 - 538
Target Start/End: Original strand, 50747355 - 50747465
Alignment:
Q  422 gaatatgccaagggatgcaaagattgtgcaatctttaaatttattgaaatcaatgggtgtggaagaatatgaaccttgtgttatacacaagtttctcgag 521  Q
    ||||||||||||||||||||||||| |||| |||||       ||||||||||||||||||||||||||||||||| |||||||| ||||||| || |||    
T  50747355 gaatatgccaagggatgcaaagattatgcagtctttg------ttgaaatcaatgggtgtggaagaatatgaacctcgtgttataaacaagttccttgag 50747448  T
Q  522 cgatggtatcgctatgt 538  Q
    | |||||||||||||||    
T  50747449 ctatggtatcgctatgt 50747465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 272 - 401
Target Start/End: Complemental strand, 50747597 - 50747468
Alignment:
Q  272 acctcacgacagggtggttgcgagaagatgaagttaacctgggattgaatcgcaagcttaacataatgaatatcaattgcagacttgctagcatgctcta 371  Q
    |||||||||  ||||||||| |||||| ||||||| |||||||||||||| || |||||||||| || || ||||||||||| ||||| ||||||||||     
T  50747597 acctcacgagggggtggttgagagaagctgaagttgacctgggattgaatggccagcttaacatcatcaacatcaattgcaggcttgccagcatgctctg 50747498  T
Q  372 aataaacttgagtgtctgttaacacatcaa 401  Q
    |||| || || |  ||||||||||||||||    
T  50747497 aatacacctgggcatctgttaacacatcaa 50747468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 104 - 275
Target Start/End: Complemental strand, 50748748 - 50748576
Alignment:
Q  104 ttcttcatccttggtttcttccaaatgcttgacagaccttttgtttggaaatttaaactt-tggttgggactagttaatgtgtcctgattatgtggaggt 202  Q
    |||||||||||  |||||||||| | | | |||||||||||||||||||| |   ||||  | |||||||  | | |||||||| ||||   ||| | ||    
T  50748748 ttcttcatcctcagtttcttccataggttcgacagaccttttgtttggaattgctaactggtagttgggagcaatcaatgtgtcttgatcgggtgtaagt 50748649  T
Q  203 ggaaaaccaggtcctactatagactttggtaatggtatcttattgcaattttgcgccagctctagaagcacct 275  Q
    ||||| ||||| ||| |||||||||| || ||||||||||| |||| |||||| || ||||||||||||||||    
T  50748648 ggaaacccaggccctgctatagacttcggcaatggtatcttgttgcgattttgtgctagctctagaagcacct 50748576  T

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