View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4620_low_1 (Length: 837)
Name: NF4620_low_1
Description: NF4620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4620_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 254; Significance: 1e-141; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 490 - 755
Target Start/End: Complemental strand, 31565719 - 31565454
Alignment:
| Q |
490 |
aagagcttacaaaaggagccatttatccacttgcttacaatcaagctctatgaacacggaagcaaaactcatgttaccgagcaactttatcgcttccttt |
589 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31565719 |
aagagcttacaaaaggtgccatttatccacttgcttacaatcaagctctatgaacacggaagcaaaactcatgttaccgagcaactttatcgcttccttt |
31565620 |
T |
|
| Q |
590 |
aagctttcactttttagatatatgcataacttataaagtaaatttcacaatatttgtatactgtaatcaaagagtgtctatccttgaatagatcaatgat |
689 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
31565619 |
aagctttcactttttagatatatgcataacttatagagtaaatttcacaatatttgtatactgtaatcaaagagtggctatccttgaatagatcaatgat |
31565520 |
T |
|
| Q |
690 |
tgatgattattatcatttacatgagaagtaacaaatgttaagaattaatgaaacaaacaattcaga |
755 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31565519 |
tgatgattattatcatttacatgagaagtaacaaatgttaagaattaatgaaacaaacaattcaga |
31565454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 303
Target Start/End: Complemental strand, 31566211 - 31565922
Alignment:
| Q |
1 |
caaacaaaaaggaaccgactcatttagttccaacacaaacaaaaattctaaataagcaagaacagttatttgacaaaaacccattaacaaaaacacaaat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
31566211 |
caaacaaaaaggaaccgactcatttagttccaacacaaacaaaaattctaaataagcaagaacagttatttgacaaaaa-------------acacaaat |
31566125 |
T |
|
| Q |
101 |
tcgtgaaaacctatttcaggaattaccttaagtcaatcaaattcgatgtctttatcgtcgaaaagagtggcagcaagtctttgagaaagcgctggaggag |
200 |
Q |
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| T |
31566124 |
tcgtgaaaacctatttcaggaattatcttaagtcgatcaaattcgatgtctttatcgtcgaaaagagtggcagcaagtctttgagaaagcgctggaggag |
31566025 |
T |
|
| Q |
201 |
gtgagaaagtaacagaaacctcagaaagaaacagcttcagttgttgttggaatttatgatggttatgggttttgaggttgaagagcaaaagaaagttgat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31566024 |
gtgagaaagtaacagaaacctcagaaagaaacagcttcagttgttgttggaatttatgatggttatgggttttgaggttgaagagcaaaagaaagttgat |
31565925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 147; E-Value: 5e-77
Query Start/End: Original strand, 300 - 463
Target Start/End: Complemental strand, 31565883 - 31565718
Alignment:
| Q |
300 |
taaggggttgaggaaaagtaagggcactttcgtcatttcattcccaaagatgaagaaaaggtgccaataattgtgttattttttatacccataaattgaa |
399 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
31565883 |
taaggggttgaggaaaagtaagggcactttcgtcatttcattcccaaagatgaagaaaaggtgccaataattgtgttattttttatatccataaattgaa |
31565784 |
T |
|
| Q |
400 |
acattctaccatattcatta--acactcataattggcaccttctgtaagctctttatgaatatgaa |
463 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
31565783 |
acattctaccatattcattaacacactcataattggcaccttttgtaagctctttatgaatatgaa |
31565718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 647 - 758
Target Start/End: Original strand, 33413910 - 33414021
Alignment:
| Q |
647 |
atactgtaatcaaagagtgtctatccttgaatagatcaatgattgatgattattatcatttacatgagaagtaacaaatgttaagaattaatgaaacaaa |
746 |
Q |
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||||| ||| ||||||||| ||||| | || |||||||||||| |||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |
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| T |
33413910 |
atactataagcaaagagtgcctatcttcaaacagatcaatgattaatgattattatcatttacatgataagtaacaaatgtcaagaattaatgaaacaaa |
33414009 |
T |
|
| Q |
747 |
caattcagacct |
758 |
Q |
| |
|
||||||| |||| |
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| T |
33414010 |
caattcaaacct |
33414021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 676 - 758
Target Start/End: Original strand, 33351038 - 33351120
Alignment:
| Q |
676 |
aatagatcaatgattgatgattattatcatttacatgagaagtaacaaatgttaagaattaatgaaacaaacaattcagacct |
758 |
Q |
| |
|
||||||||||||||| |||||||||||| |||||| || |||||||||||| ||||||||||||||||||||||||| |||| |
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| T |
33351038 |
aatagatcaatgattaatgattattatcctttacaatagtagtaacaaatgtcaagaattaatgaaacaaacaattcaaacct |
33351120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 748 - 827
Target Start/End: Original strand, 33414090 - 33414169
Alignment:
| Q |
748 |
aattcagacctcatctatcctcgatagagatacatatcagtaaaatgtattggcgtctaatcaacatttggttatgatga |
827 |
Q |
| |
|
||||||| |||||| ||||||| ||| ||||||| |||||||||| || | ||| ||||||||||||||||||| |||| |
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| T |
33414090 |
aattcagtcctcatgtatcctcaatacagatacagatcagtaaaacgtgtccgcgcctaatcaacatttggttattatga |
33414169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 573 - 623
Target Start/End: Original strand, 33413817 - 33413867
Alignment:
| Q |
573 |
actttatcgcttcctttaagctttcactttttagatatatgcataacttat |
623 |
Q |
| |
|
||||||||||| ||||||||||| ||||| ||||||||| ||||||||||| |
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| T |
33413817 |
actttatcgctccctttaagcttccacttcttagatatacgcataacttat |
33413867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 9e-20; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 684 - 758
Target Start/End: Complemental strand, 17446233 - 17446159
Alignment:
| Q |
684 |
aatgattgatgattattatcatttacatgagaagtaacaaatgttaagaattaatgaaacaaacaattcagacct |
758 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||| | |||| ||||| |||||||||||||| |||| |
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| T |
17446233 |
aatgattaatgattattatcatttacatgagaagtaacaaatatcaagagttaatcaaacaaacaattcaaacct |
17446159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 572 - 636
Target Start/End: Complemental strand, 17446348 - 17446284
Alignment:
| Q |
572 |
aactttatcgcttcctttaagctttcactttttagatatatgcataacttataaagtaaatttca |
636 |
Q |
| |
|
|||||||| ||||||||||||||| ||||| ||||||| |||||||||||| || |||||||| |
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| T |
17446348 |
aactttattgcttcctttaagcttccacttcccagatatacgcataacttatagagcaaatttca |
17446284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 89 - 208
Target Start/End: Original strand, 11662784 - 11662909
Alignment:
| Q |
89 |
aaaaacacaaattcgtgaaaacctatttcaggaattaccttaagtcaatcaaattcgatgtctttatc------gtcgaaaagagtggcagcaagtcttt |
182 |
Q |
| |
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||||||||||||| | |||||| |||||| |||||||||||| || |||||||| ||||||||||| ||||||||||| | |||| |||||| |
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| T |
11662784 |
aaaaacacaaattaatcaaaaccgatttcaagaattaccttaaatcgctcaaattcaatgtctttatcatgagtatcgaaaagagtaggagcaggtcttt |
11662883 |
T |
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| Q |
183 |
gagaaagcgctggaggaggtgagaaa |
208 |
Q |
| |
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|||||||| || |||||||||||||| |
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| T |
11662884 |
gagaaagctctcgaggaggtgagaaa |
11662909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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