View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4621-Insertion-1 (Length: 634)
Name: NF4621-Insertion-1
Description: NF4621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4621-Insertion-1 |
 | |
|
| [»] chr3 (5 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 408; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 176 - 634
Target Start/End: Complemental strand, 36808790 - 36808334
Alignment:
| Q |
176 |
tcacaatatgattataatcatacaaacattttcatttaataaatttctcgataatacctcatgtcaacttacttaaaaaattataaggaacaactataca |
275 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
36808790 |
tcacaatatgattataatcatacaaacattttcatttaataaatttctcgataatacctcatgtcaacttacttcaaaaattataaggaacaactataca |
36808691 |
T |
|
| Q |
276 |
aatattttaaagtaaataaaatttctcaaatcaccaaaacttgtgcaagccagtatatgatttcaaaatataaataccatgtaatggacaaaggttttca |
375 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36808690 |
aatattttaaagtaaataaaatttctcaaatcaccaaaacttgtgcaagccagtatatgatttcaaaatataaataccatgtaatggacaaaggttttca |
36808591 |
T |
|
| Q |
376 |
tgtaaatcaaaatcttttccaaagctaaattcaccatcaatnnnnnnnnttgcaattcaattttgttcactcctagcagttagatagatgcgtacactta |
475 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36808590 |
tgtaaatcaaaatcttttccaaagctaaattcaccatcaataaaaaaaattgcaattcaattttgttcactcctagcagttagatagatgcgtacactta |
36808491 |
T |
|
| Q |
476 |
ggttgtgagacttctccttatatatttgaatttgagcctcaagcttcctatatgcctcattcttatactcaaaattaccacatttgccgtaataaggaaa |
575 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
36808490 |
ggttgtgagacttctccttatatatttgaatttgagcct--tgcttcctatatgcctcattcttatactcaaaattaccacgtttgccgtaatatggaaa |
36808393 |
T |
|
| Q |
576 |
gtcggaatcgtcatgcttagagaagtacgtcacaagatcttcaacgggttctgttccat |
634 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36808392 |
gtcggaatcgtcatgcttagagaagtacgtcacaagatcttcaacgggttctgttccat |
36808334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 7 - 178
Target Start/End: Complemental strand, 36808982 - 36808811
Alignment:
| Q |
7 |
atgaccaaccaaaaaatactcaatcatatcctgaaatattaatccaagtgttgtatactcagtaatcagaccagcatatttgaagcaaccacaatatcat |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36808982 |
atgaccaaccaaaaaatactcaatcatatcctgaaatattaatccaagtgttgtatactcggtaatcagaccagcatatttgaagcaaccacaatatcat |
36808883 |
T |
|
| Q |
107 |
acatctagccatagccattttgattctcaatcaactttcatcccaaaataaccattcaaatgcgatctttca |
178 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36808882 |
acatctagccatagccattttgattctcaatcaactttcatcccaaaataaccattcaaatgcgatctttca |
36808811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 456 - 599
Target Start/End: Original strand, 36512295 - 36512438
Alignment:
| Q |
456 |
tagatagatgcgtacacttaggttgtgagacttctccttatatatttgaatttgagcctcaagcttcctatatgcctcattcttatactcaaaattacca |
555 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
36512295 |
tagatagatgcgtacacttaggttgcgagacttctccttatagatttgaatttgagcctcaagcagcctatatgcctcattcttatactcaaaattacca |
36512394 |
T |
|
| Q |
556 |
catttgccgtaataaggaaagtcggaatcgtcatgcttagagaa |
599 |
Q |
| |
|
| |||| ||| ||||||||||||||||||||||| ||||||||| |
|
|
| T |
36512395 |
cttttgacgtgataaggaaagtcggaatcgtcatacttagagaa |
36512438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 288 - 367
Target Start/End: Original strand, 36511377 - 36511456
Alignment:
| Q |
288 |
taaataaaatttctcaaatcaccaaaacttgtgcaagccagtatatgatttcaaaatataaataccatgtaatggacaaa |
367 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | || || ||||||||||||||||||||||||||||||||||| |
|
|
| T |
36511377 |
taaataaaatttctcaaatcaccaaaacttgtgcatgtcaacatgtgatttcaaaatataaataccatgtaatggacaaa |
36511456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 186 - 245
Target Start/End: Complemental strand, 33450335 - 33450276
Alignment:
| Q |
186 |
attataatcatacaaacattttcatttaataaatttctcgataatacctcatgtcaactt |
245 |
Q |
| |
|
||||||||| || |||||||||||||| ||||||||||| |||| ||||||||||||||| |
|
|
| T |
33450335 |
attataatcttataaacattttcatttcataaatttctcaataaaacctcatgtcaactt |
33450276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University