View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4621-Insertion-2 (Length: 381)
Name: NF4621-Insertion-2
Description: NF4621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4621-Insertion-2 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 339; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 8 - 381
Target Start/End: Original strand, 14771834 - 14772205
Alignment:
| Q |
8 |
tctttctgggtagatgcttttgcactgtttagattttgaatttttgagtgatgttattgtctgtttctttgttattcttccttgacgcattcttccttgc |
107 |
Q |
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| T |
14771834 |
tctttctgggtagatacttttgcactgtttagattttgaatttttgagtgatgttattgtctgtttctttgttattcttccttgacgcattcttccttgc |
14771933 |
T |
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| Q |
108 |
agtcgcagaaccatcccaatcgtcacggcaactccaactgcaatacaggtgtataatggattcagttaccataatagatttaacaactttaatatacaaa |
207 |
Q |
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| T |
14771934 |
agtcgcagaaccatcccaatcgtcatggcaactccaactgcaatacaggtgtataatggattaagttaccataatagatttaacaactttaatatacaaa |
14772033 |
T |
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| Q |
208 |
gttaaaaggaacttaacgaacaattaacaagttaacctggaaaatgatatacctgaagcatacttaagagatcgacctatgagtctgtggtactgcttgc |
307 |
Q |
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| T |
14772034 |
gttaaaaggaacttaacgaacaattaacaagttaacctggaaaatgatatacctgaagcatacataagagatcgacctatgagtctgtggtactgcttgc |
14772133 |
T |
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| Q |
308 |
aggttgttgatcagcttcagtttttggaatgcttaaatgaggtttcacagcagcagttacaattcggtgaaata |
381 |
Q |
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| T |
14772134 |
aggttgtt--tcagcttcagtttttggaatgcttaaatgaggttgctcagcagcagttacaattcggtgaaata |
14772205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 171 - 381
Target Start/End: Original strand, 15014113 - 15014323
Alignment:
| Q |
171 |
agttaccataatagatttaacaacttta-atatacaaagttaaaaggaacttaacgaacaat-taacaagttaacctggaaaatgatatacctgaagcat |
268 |
Q |
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| T |
15014113 |
agttagcatgatagattgaaaaacttaatatatacaaagtcaaaagcaatttaatgaagaaactaacaagtaaacctaaaaaataatatacctgaaacaa |
15014212 |
T |
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| Q |
269 |
acttaagagatcgacctatgagtctgtggtactgcttgcaggttgttgatcagcttcagtttttggaatgcttaaatgaggtttcacagcagcagttaca |
368 |
Q |
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| T |
15014213 |
acataagagatcgatctatgagtctgtggtactgcttgcatgttttt--ctaccttcagtttttggaatgtttaaatgagggtgctctgcagccgttaca |
15014310 |
T |
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| Q |
369 |
attcggtgaaata |
381 |
Q |
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| T |
15014311 |
atttggtgaaata |
15014323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 183 - 371
Target Start/End: Original strand, 17878747 - 17878933
Alignment:
| Q |
183 |
agatttaacaactttaatatacaaagttaaaaggaacttaacgaacaattaacaagttaacctggaaaatgatatacctgaagcatacttaagagatcga |
282 |
Q |
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| T |
17878747 |
agattgaaaaactctaatatacaaagtcaaaaggaacttaatgaacaactaacaagtaaaatctaaaattgatatacctgaaacaaactgaagagatcct |
17878846 |
T |
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| Q |
283 |
cctatgagtctgtggtactgcttgcaggttgttgatcagcttcagtttttggaatgcttaaatgaggtttcacagcagcagttacaatt |
371 |
Q |
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| T |
17878847 |
tttatgagcctatggaacttcttgtgtctttttc--cagcttcagttactggaatgcttaaatgagggtgctcagcagcacttacaatt |
17878933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 319 - 373
Target Start/End: Complemental strand, 36878948 - 36878894
Alignment:
| Q |
319 |
cagcttcagtttttggaatgcttaaatgaggtttcacagcagcagttacaattcg |
373 |
Q |
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| T |
36878948 |
cagcttcagtttctggaatgcttaaatgaggatgctcggcagcagttacaattcg |
36878894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 322 - 372
Target Start/End: Original strand, 51365227 - 51365277
Alignment:
| Q |
322 |
cttcagtttttggaatgcttaaatgaggtttcacagcagcagttacaattc |
372 |
Q |
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| T |
51365227 |
cttcagttttaggaatgcttaaatgagggtgctcagcagcggttacaattc |
51365277 |
T |
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