View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4621-Insertion-3 (Length: 273)

Name: NF4621-Insertion-3
Description: NF4621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4621-Insertion-3
NF4621-Insertion-3
[»] chr7 (26 HSPs)
chr7 (8-268)||(40582841-40583112)
chr7 (53-268)||(22109596-22109813)
chr7 (11-58)||(23731477-23731524)
chr7 (8-52)||(41815840-41815884)
chr7 (8-52)||(43108053-43108097)
chr7 (8-52)||(44600369-44600413)
chr7 (8-50)||(9818406-9818448)
chr7 (8-50)||(10720331-10720373)
chr7 (8-52)||(34808142-34808186)
chr7 (6-47)||(39348717-39348758)
chr7 (8-52)||(3157359-3157403)
chr7 (8-48)||(7989437-7989477)
chr7 (11-47)||(29236206-29236242)
chr7 (8-52)||(35181115-35181159)
chr7 (16-52)||(41889094-41889130)
chr7 (8-52)||(41890407-41890451)
chr7 (8-52)||(47383329-47383373)
chr7 (11-50)||(19933205-19933244)
chr7 (11-50)||(19964344-19964383)
chr7 (6-52)||(39337450-39337496)
chr7 (8-46)||(48879317-48879355)
chr7 (8-45)||(22111477-22111514)
chr7 (11-52)||(30082287-30082328)
chr7 (8-52)||(21654268-21654312)
chr7 (8-52)||(36576341-36576385)
chr7 (8-52)||(45598827-45598871)
[»] chr6 (7 HSPs)
chr6 (8-52)||(12278630-12278674)
chr6 (8-52)||(30766370-30766414)
chr6 (8-52)||(10227836-10227880)
chr6 (8-52)||(17721998-17722042)
chr6 (8-50)||(374025-374067)
chr6 (8-57)||(17598212-17598261)
chr6 (11-52)||(30949059-30949100)
[»] chr1 (28 HSPs)
chr1 (8-57)||(4529106-4529155)
chr1 (8-52)||(36383852-36383896)
chr1 (8-52)||(38942633-38942677)
chr1 (8-52)||(46949245-46949289)
chr1 (8-50)||(28017584-28017626)
chr1 (11-52)||(40935808-40935849)
chr1 (11-52)||(40960669-40960710)
chr1 (11-52)||(49924343-49924384)
chr1 (8-52)||(9127967-9128011)
chr1 (8-52)||(29488672-29488716)
chr1 (8-52)||(35189124-35189168)
chr1 (8-52)||(35941765-35941809)
chr1 (8-52)||(44875103-44875147)
chr1 (11-57)||(39026441-39026487)
chr1 (8-52)||(23874019-23874063)
chr1 (8-52)||(25990672-25990716)
chr1 (8-52)||(26907281-26907325)
chr1 (8-55)||(47996875-47996922)
chr1 (8-58)||(28916707-28916757)
chr1 (8-46)||(35884152-35884190)
chr1 (11-48)||(31970504-31970540)
chr1 (11-52)||(45358071-45358112)
chr1 (16-52)||(15285728-15285764)
chr1 (8-52)||(18036469-18036512)
chr1 (8-52)||(18852147-18852191)
chr1 (30-58)||(18913560-18913588)
chr1 (8-52)||(40219981-40220025)
chr1 (8-52)||(43656229-43656272)
[»] chr5 (10 HSPs)
chr5 (8-52)||(24439498-24439542)
chr5 (11-52)||(42364965-42365006)
chr5 (8-52)||(8146202-8146246)
chr5 (8-52)||(35462907-35462951)
chr5 (11-46)||(31316993-31317028)
chr5 (8-58)||(31690809-31690859)
chr5 (8-57)||(8143855-8143904)
chr5 (8-52)||(30086737-30086781)
chr5 (8-57)||(8541753-8541802)
chr5 (8-48)||(13146659-13146699)
[»] chr4 (19 HSPs)
chr4 (8-52)||(30776639-30776683)
chr4 (8-52)||(30777408-30777452)
chr4 (8-52)||(3043322-3043366)
chr4 (8-52)||(29180567-29180611)
chr4 (8-46)||(9798230-9798268)
chr4 (10-52)||(47806819-47806861)
chr4 (11-52)||(50768366-50768407)
chr4 (9-46)||(51495079-51495116)
chr4 (8-52)||(30012108-30012152)
chr4 (8-52)||(32012482-32012526)
chr4 (10-50)||(38187883-38187923)
chr4 (8-52)||(38940790-38940834)
chr4 (8-52)||(53677634-53677678)
chr4 (17-52)||(26916262-26916297)
chr4 (17-54)||(49080178-49080215)
chr4 (8-52)||(49901947-49901992)
chr4 (11-52)||(55937861-55937902)
chr4 (8-52)||(39970144-39970188)
chr4 (8-52)||(52712984-52713028)
[»] chr3 (24 HSPs)
chr3 (8-52)||(21654169-21654213)
chr3 (11-57)||(43575878-43575924)
chr3 (10-52)||(49067038-49067080)
chr3 (11-52)||(45781322-45781363)
chr3 (11-52)||(51255113-51255154)
chr3 (8-52)||(1335035-1335079)
chr3 (8-52)||(13541202-13541246)
chr3 (8-52)||(16739306-16739350)
chr3 (17-52)||(45347828-45347863)
chr3 (11-52)||(28793086-28793127)
chr3 (11-52)||(51426542-51426583)
chr3 (8-52)||(23513492-23513536)
chr3 (8-52)||(26641263-26641307)
chr3 (11-47)||(34105473-34105509)
chr3 (8-52)||(37324239-37324283)
chr3 (14-46)||(52251978-52252010)
chr3 (8-47)||(36189158-36189197)
chr3 (11-46)||(46296231-46296266)
chr3 (8-58)||(53020101-53020151)
chr3 (11-52)||(46819974-46820015)
chr3 (16-52)||(31126137-31126173)
chr3 (16-52)||(46580461-46580497)
chr3 (17-57)||(49583885-49583925)
chr3 (8-52)||(55400663-55400707)
[»] chr2 (18 HSPs)
chr2 (8-52)||(792544-792588)
chr2 (8-52)||(21539681-21539725)
chr2 (8-52)||(38549831-38549875)
chr2 (8-55)||(44803820-44803867)
chr2 (8-52)||(4033863-4033907)
chr2 (8-52)||(29514207-29514251)
chr2 (11-52)||(15068670-15068711)
chr2 (11-52)||(33635260-33635301)
chr2 (8-52)||(8784319-8784363)
chr2 (8-52)||(14565562-14565606)
chr2 (8-52)||(18834100-18834144)
chr2 (8-52)||(28424198-28424242)
chr2 (8-52)||(28492444-28492488)
chr2 (8-58)||(43075668-43075718)
chr2 (11-48)||(43451444-43451481)
chr2 (8-52)||(4091934-4091978)
chr2 (8-52)||(15858798-15858842)
chr2 (8-52)||(29514663-29514706)
[»] scaffold0495 (1 HSPs)
scaffold0495 (8-52)||(4555-4599)
[»] chr8 (17 HSPs)
chr8 (8-52)||(11043984-11044028)
chr8 (8-52)||(24612670-24612714)
chr8 (8-52)||(35259984-35260028)
chr8 (8-52)||(37597997-37598041)
chr8 (8-43)||(44358681-44358716)
chr8 (8-46)||(32678699-32678737)
chr8 (11-49)||(33851216-33851254)
chr8 (8-50)||(44052549-44052591)
chr8 (11-52)||(25321779-25321820)
chr8 (8-52)||(35344293-35344337)
chr8 (8-52)||(35346494-35346538)
chr8 (11-52)||(27752513-27752554)
chr8 (11-52)||(31133777-31133818)
chr8 (11-52)||(36537985-36538026)
chr8 (8-52)||(27621057-27621101)
chr8 (8-55)||(39187156-39187204)
chr8 (17-57)||(41809022-41809062)


Alignment Details
Target: chr7 (Bit Score: 136; Significance: 5e-71; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 8 - 268
Target Start/End: Complemental strand, 40583112 - 40582841
Alignment:
Q  8 aataataacataaaagttgatcttttttgcttatattttgagacagaaaattatg---------gatgaaaatgtgttttgaaattgttctgagaccaat 98  Q
    ||||||||||||||||||| | |||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||    
T  40583112 aataataacataaaagttggtattttttgcttatattttgagacagaaaattatgaaaattatggatgaaaatgtgttttgaaattgttctgagaccaat 40583013  T
Q  99 gtcagcattattttcattcaaagagaaaatcaatannnnnnnngactcaaaac--agtgagtttttatatataaataaatacgttttaaaatgaacaaat 196  Q
    |||||||||||||||||||||| |||||||| |||        ||||||||||  |||||||||||| |||||||||||||| |||||||||||||||||    
T  40583012 gtcagcattattttcattcaaaaagaaaatcgatattttttttgactcaaaacatagtgagtttttaaatataaataaatacattttaaaatgaacaaat 40582913  T
Q  197 tgaaaggagcgtgatgannnnnnnnnnnnnnnattagcttaaatccatgaaaaattcatgaccatttaatat 268  Q
    |||||||||||||||||               ||||||||||||||||||||||||||||||||||||||||    
T  40582912 tgaaaggagcgtgatgattttttactttttttattagcttaaatccatgaaaaattcatgaccatttaatat 40582841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 53 - 268
Target Start/End: Complemental strand, 22109813 - 22109596
Alignment:
Q  53 gaaaattatggatgaaaatgtgttttgaaattgttctgagaccaatgtcagcattattttcattcaaagagaaaatcaatannnnnnnngactcaaaac- 151  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||        ||||||||||     
T  22109813 gaaaattatggatgaaaatgtgttttgaaattgttctgagaccaatgtcagcattattttcattcaaaaagaaaatcgatattttttttgactcaaaaca 22109714  T
Q  152 -agtgagtttttatatataaataaatacgttttaaaatgaacaaattgaaaggagcgtgatgannnnnnnnnnnnnnnattagcttaaatccatgaaaaa 250  Q
     |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||               ||||||||||||||||||||||    
T  22109713 tagtgagtttttaaatataaataaatacattttaaaatgaacaaattgaaaggagcgtgatgattttttactttttttattagcttaaatccatgaaaaa 22109614  T
Q  251 ttcatgaccatttaatat 268  Q
    ||||||||||||||||||    
T  22109613 ttcatgaccatttaatat 22109596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 23731524 - 23731477
Alignment:
Q  11 aataacataaaagttgatcttttttgcttatattttgagacagaaaat 58  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||    
T  23731524 aatagcataaaagttgatcttttttgcttatattttgagacagaaaat 23731477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 41815840 - 41815884
Alignment:
Q  8 aataataacataaaagttgatcttttttgcttatattttgagaca 52  Q
    ||||||| |||||||||||||||||||||||||||||||||||||    
T  41815840 aataatagcataaaagttgatcttttttgcttatattttgagaca 41815884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 43108053 - 43108097
Alignment:
Q  8 aataataacataaaagttgatcttttttgcttatattttgagaca 52  Q
    ||||||||||||||||||| |||||||||||||||||||||||||    
T  43108053 aataataacataaaagttggtcttttttgcttatattttgagaca 43108097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 44600413 - 44600369
Alignment:
Q  8 aataataacataaaagttgatcttttttgcttatattttgagaca 52  Q
    ||||||||||||||||||| |||||||||||||||||||||||||    
T  44600413 aataataacataaaagttggtcttttttgcttatattttgagaca 44600369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 50
Target Start/End: Complemental strand, 9818448 - 9818406
Alignment:
Q  8 aataataacataaaagttgatcttttttgcttatattttgaga 50  Q
    ||||||||||||||||||| |||||||||||||||||||||||    
T  9818448 aataataacataaaagttggtcttttttgcttatattttgaga 9818406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 50
Target Start/End: Complemental strand, 10720373 - 10720331
Alignment:
Q  8 aataataacataaaagttgatcttttttgcttatattttgaga 50  Q
    ||||||||||||||||||| |||||||||||||||||||||||    
T  10720373 aataataacataaaagttggtcttttttgcttatattttgaga 10720331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 34808186 - 34808142
Alignment:
Q  8 aataataacataaaagttgatcttttttgcttatattttgagaca 52  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||    
T  34808186 aataataacataaaagttggtcttttttgcttatattttaagaca 34808142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 6 - 47
Target Start/End: Complemental strand, 39348758 - 39348717
Alignment:
Q  6 acaataataacataaaagttgatcttttttgcttatattttg 47  Q
    ||||||||| ||||||||||| ||||||||||||||||||||    
T  39348758 acaataatagcataaaagttggtcttttttgcttatattttg 39348717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 3157403 - 3157359
Alignment:
Q  8 aataataacataaaagttgatcttttttgcttatattttgagaca 52  Q
    ||||||| ||||||||||  |||||||||||||||||||||||||    
T  3157403 aataatagcataaaagttagtcttttttgcttatattttgagaca 3157359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 48
Target Start/End: Original strand, 7989437 - 7989477
Alignment:
Q  8 aataataacataaaagttgatcttttttgcttatattttga 48  Q
    ||||||||||||||||||| |||||||| ||||||||||||    
T  7989437 aataataacataaaagttggtcttttttacttatattttga 7989477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 47
Target Start/End: Original strand, 29236206 - 29236242
Alignment:
Q  11 aataacataaaagttgatcttttttgcttatattttg 47  Q
    |||||||||||||||| ||||||||||||||||||||    
T  29236206 aataacataaaagttggtcttttttgcttatattttg 29236242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 35181159 - 35181115
Alignment:
Q  8 aataataacataaaagttgatcttttttgcttatattttgagaca 52  Q
    ||||||| ||||||||||| ||||||||||||||||| |||||||    
T  35181159 aataatagcataaaagttggtcttttttgcttatattctgagaca 35181115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 52
Target Start/End: Complemental strand, 41889130 - 41889094
Alignment:
Q  16 cataaaagttgatcttttttgcttatattttgagaca 52  Q
    ||||||||||||| |||||||||||||||||||||||    
T  41889130 cataaaagttgattttttttgcttatattttgagaca 41889094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 41890407 - 41890451
Alignment:
Q  8 aataataacataaaagttgatcttttttgcttatattttgagaca 52  Q
    ||||||| ||||||| ||| |||||||||||||||||||||||||    
T  41890407 aataatagcataaaaattggtcttttttgcttatattttgagaca 41890451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 47383373 - 47383329
Alignment:
Q  8 aataataacataaaagttgatcttttttgcttatattttgagaca 52  Q
    ||||||| ||||||||||| | |||||||||||||||||||||||    
T  47383373 aataatatcataaaagttggtattttttgcttatattttgagaca 47383329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 50
Target Start/End: Original strand, 19933205 - 19933244
Alignment:
Q  11 aataacataaaagttgatcttttttgcttatattttgaga 50  Q
    |||| |||||||||| ||||||||||||||||||||||||    
T  19933205 aatagcataaaagtttatcttttttgcttatattttgaga 19933244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 50
Target Start/End: Original strand, 19964344 - 19964383
Alignment:
Q  11 aataacataaaagttgatcttttttgcttatattttgaga 50  Q
    |||| |||||||||| ||||||||||||||||||||||||    
T  19964344 aatagcataaaagtttatcttttttgcttatattttgaga 19964383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 52
Target Start/End: Complemental strand, 39337496 - 39337450
Alignment:
Q  6 acaataataacataaaagttgatcttttttgcttatattttgagaca 52  Q
    ||||||||| ||||||||||| | |||||||||||||||||| ||||    
T  39337496 acaataatagcataaaagttggtattttttgcttatattttgggaca 39337450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 46
Target Start/End: Complemental strand, 48879355 - 48879317
Alignment:
Q  8 aataataacataaaagttgatcttttttgcttatatttt 46  Q
    ||||||||||||||||||| |||||||| ||||||||||    
T  48879355 aataataacataaaagttggtcttttttacttatatttt 48879317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 45
Target Start/End: Original strand, 22111477 - 22111514
Alignment:
Q  8 aataataacataaaagttgatcttttttgcttatattt 45  Q
    ||||||||||||||||||| | ||||||||||||||||    
T  22111477 aataataacataaaagttggtattttttgcttatattt 22111514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 30082328 - 30082287
Alignment:
Q  11 aataacataaaagttgatcttttttgcttatattttgagaca 52  Q
    |||||||||||| ||| |||||||||||||||||||| ||||    
T  30082328 aataacataaaaattggtcttttttgcttatattttgggaca 30082287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 21654268 - 21654312
Alignment:
Q  8 aataataacataaaagttgatcttttttgcttatattttgagaca 52  Q
    ||||||| ||||||||||| || |||||| |||||||||||||||    
T  21654268 aataatagcataaaagttggtcctttttgtttatattttgagaca 21654312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 36576385 - 36576341
Alignment:
Q  8 aataataacataaaagttgatcttttttgcttatattttgagaca 52  Q
    ||||||| ||||||||||  |||||||| ||||||||||||||||    
T  36576385 aataatagcataaaagtttgtcttttttacttatattttgagaca 36576341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 45598871 - 45598827
Alignment:
Q  8 aataataacataaaagttgatcttttttgcttatattttgagaca 52  Q
    ||||||| ||||||| ||  |||||||||||||||||||||||||    
T  45598871 aataatagcataaaaattagtcttttttgcttatattttgagaca 45598827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 12278674 - 12278630
Alignment:
Q  8 aataataacataaaagttgatcttttttgcttatattttgagaca 52  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  12278674 aataataacataaaagttgatcttttttgcttatattttgagaca 12278630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 30766414 - 30766370
Alignment:
Q  8 aataataacataaaagttgatcttttttgcttatattttgagaca 52  Q
    ||||||||||||||||||||| |||||||||||||||||||||||    
T  30766414 aataataacataaaagttgattttttttgcttatattttgagaca 30766370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 10227880 - 10227836
Alignment:
Q  8 aataataacataaaagttgatcttttttgcttatattttgagaca 52  Q
    ||||||| ||||||||||| |||||||||||||||||||||||||    
T  10227880 aataatagcataaaagttggtcttttttgcttatattttgagaca 10227836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 17721998 - 17722042
Alignment:
Q  8 aataataacataaaagttgatcttttttgcttatattttgagaca 52  Q
    ||||||| ||||||||||| |||||||||||||||||||||||||    
T  17721998 aataatagcataaaagttggtcttttttgcttatattttgagaca 17722042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 50
Target Start/End: Complemental strand, 374067 - 374025
Alignment:
Q  8 aataataacataaaagttgatcttttttgcttatattttgaga 50  Q
    ||||||| ||||||||||| |||||||||||||||||||||||    
T  374067 aataatagcataaaagttggtcttttttgcttatattttgaga 374025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 17598261 - 17598212
Alignment:
Q  8 aataataacataaaagttgatcttttttgcttatattttgagacagaaaa 57  Q
    |||||||||||| |||||| |||||||||||||||||||| |||| ||||    
T  17598261 aataataacatacaagttggtcttttttgcttatattttgggacaaaaaa 17598212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 30949100 - 30949059
Alignment:
Q  11 aataacataaaagttgatcttttttgcttatattttgagaca 52  Q
    |||| ||||||||||  |||||||||||||||||||||||||    
T  30949100 aatagcataaaagttagtcttttttgcttatattttgagaca 30949059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 4529155 - 4529106
Alignment:
Q  8 aataataacataaaagttgatcttttttgcttatattttgagacagaaaa 57  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| ||||    
T  4529155 aataatagcataaaagttgatcttttttgcttatattttgagacaaaaaa 4529106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 36383896 - 36383852
Alignment:
Q  8 aataataacataaaagttgatcttttttgcttatattttgagaca 52  Q
    |||||||||||||||||||||||||||||||||||||||| ||||    
T  36383896 aataataacataaaagttgatcttttttgcttatattttgtgaca 36383852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 38942633 - 38942677
Alignment:
Q  8 aataataacataaaagttgatcttttttgcttatattttgagaca 52  Q
    ||||||| |||||||||||||||||||||||||||||||||||||    
T  38942633 aataatagcataaaagttgatcttttttgcttatattttgagaca 38942677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 46949289 - 46949245
Alignment:
Q  8 aataataacataaaagttgatcttttttgcttatattttgagaca 52  Q
    ||||||||||||||||||| |||||||||||||||||||||||||    
T  46949289 aataataacataaaagttggtcttttttgcttatattttgagaca 46949245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 50
Target Start/End: Complemental strand, 28017626 - 28017584
Alignment:
Q  8 aataataacataaaagttgatcttttttgcttatattttgaga 50  Q
    ||||||| |||||||||||||||||||||||||||||||||||    
T  28017626 aataatagcataaaagttgatcttttttgcttatattttgaga 28017584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 52
Target Start/End: Original strand, 40935808 - 40935849
Alignment:
Q  11 aataacataaaagttgatcttttttgcttatattttgagaca 52  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  40935808 aatagcataaaagttgatcttttttgcttatattttgagaca 40935849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 52
Target Start/End: Original strand, 40960669 - 40960710
Alignment:
Q  11 aataacataaaagttgatcttttttgcttatattttgagaca 52  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  40960669 aatagcataaaagttgatcttttttgcttatattttgagaca 40960710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 49924384 - 49924343
Alignment:
Q  11 aataacataaaagttgatcttttttgcttatattttgagaca 52  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  49924384 aatagcataaaagttgatcttttttgcttatattttgagaca 49924343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 9128011 - 9127967
Alignment:
Q  8 aataataacataaaagttgatcttttttgcttatattttgagaca 52  Q
    ||||||| ||||||||||| |||||||||||||||||||||||||    
T  9128011 aataatagcataaaagttggtcttttttgcttatattttgagaca 9127967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 29488716 - 29488672
Alignment:
Q  8 aataataacataaaagttgatcttttttgcttatattttgagaca 52  Q
    ||||||| ||||||||||| |||||||||||||||||||||||||    
T  29488716 aataatagcataaaagttggtcttttttgcttatattttgagaca 29488672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 35189168 - 35189124
Alignment:
Q  8 aataataacataaaagttgatcttttttgcttatattttgagaca 52  Q
    ||||||| ||||||||||| |||||||||||||||||||||||||    
T  35189168 aataataccataaaagttggtcttttttgcttatattttgagaca 35189124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 35941809 - 35941765
Alignment:
Q  8 aataataacataaaagttgatcttttttgcttatattttgagaca 52  Q
    ||||||| ||||||||||||| |||||||||||||||||||||||    
T  35941809 aataatagcataaaagttgattttttttgcttatattttgagaca 35941765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 44875147 - 44875103
Alignment:
Q  8 aataataacataaaagttgatcttttttgcttatattttgagaca 52  Q
    ||||||| ||||||||||| |||||||||||||||||||||||||    
T  44875147 aataatagcataaaagttggtcttttttgcttatattttgagaca 44875103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 39026441 - 39026487
Alignment:
Q  11 aataacataaaagttgatcttttttgcttatattttgagacagaaaa 57  Q
    |||| ||||||||||| ||||||||||||||||||||||||| ||||    
T  39026441 aatagcataaaagttggtcttttttgcttatattttgagacaaaaaa 39026487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 23874019 - 23874063
Alignment:
Q  8 aataataacataaaagttgatcttttttgcttatattttgagaca 52  Q
    ||||||| ||||||||||| |||||||||| ||||||||||||||    
T  23874019 aataatagcataaaagttggtcttttttgcgtatattttgagaca 23874063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 25990716 - 25990672
Alignment:
Q  8 aataataacataaaagttgatcttttttgcttatattttgagaca 52  Q
    ||||||| ||||||| ||| |||||||||||||||||||||||||    
T  25990716 aataatagcataaaaattggtcttttttgcttatattttgagaca 25990672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 26907281 - 26907325
Alignment:
Q  8 aataataacataaaagttgatcttttttgcttatattttgagaca 52  Q
    ||||||| ||||||||||| |||||||| ||||||||||||||||    
T  26907281 aataatagcataaaagttggtcttttttacttatattttgagaca 26907325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 8 - 55
Target Start/End: Complemental strand, 47996922 - 47996875
Alignment:
Q  8 aataataacataaaagttgatcttttttgcttatattttgagacagaa 55  Q
    ||||||| ||||||| ||||||||||||||||||||||| ||| ||||    
T  47996922 aataatagcataaaaattgatcttttttgcttatattttaagatagaa 47996875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 28916707 - 28916757
Alignment:
Q  8 aataataacataaaagttgatcttttttgcttatattttgagacagaaaat 58  Q
    ||||||| ||||||||||  |||||||| |||||||||||||||| |||||    
T  28916707 aataatagcataaaagtttgtcttttttacttatattttgagacaaaaaat 28916757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 46
Target Start/End: Complemental strand, 35884190 - 35884152
Alignment:
Q  8 aataataacataaaagttgatcttttttgcttatatttt 46  Q
    ||||||| ||||||||||| |||||||||||||||||||    
T  35884190 aataatagcataaaagttggtcttttttgcttatatttt 35884152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 11 - 48
Target Start/End: Original strand, 31970504 - 31970540
Alignment:
Q  11 aataacataaaagttgatcttttttgcttatattttga 48  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  31970504 aataacataaaagttgatctttttt-cttatattttga 31970540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 11 - 52
Target Start/End: Original strand, 45358071 - 45358112
Alignment:
Q  11 aataacataaaagttgatcttttttgcttatattttgagaca 52  Q
    |||| ||||||||||| | |||||||||||||||||||||||    
T  45358071 aatagcataaaagttggttttttttgcttatattttgagaca 45358112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 52
Target Start/End: Complemental strand, 15285764 - 15285728
Alignment:
Q  16 cataaaagttgatcttttttgcttatattttgagaca 52  Q
    ||||||| ||| |||||||||||||||||||||||||    
T  15285764 cataaaaattggtcttttttgcttatattttgagaca 15285728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 18036512 - 18036469
Alignment:
Q  8 aataataacataaaagttgatcttttttgcttatattttgagaca 52  Q
    ||||||| ||||||||||| |||||||| ||||||||||||||||    
T  18036512 aataatagcataaaagttggtctttttt-cttatattttgagaca 18036469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 18852191 - 18852147
Alignment:
Q  8 aataataacataaaagttgatcttttttgcttatattttgagaca 52  Q
    |||||| |||||||||| | |||||| ||||||||||||||||||    
T  18852191 aataatgacataaaagtaggtcttttatgcttatattttgagaca 18852147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 58
Target Start/End: Original strand, 18913560 - 18913588
Alignment:
Q  30 ttttttgcttatattttgagacagaaaat 58  Q
    |||||||||||||||||||||||||||||    
T  18913560 ttttttgcttatattttgagacagaaaat 18913588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 40220025 - 40219981
Alignment:
Q  8 aataataacataaaagttgatcttttttgcttatattttgagaca 52  Q
    ||||||| ||||||| ||  |||||||||||||||||||||||||    
T  40220025 aataatagcataaaaattagtcttttttgcttatattttgagaca 40219981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 43656229 - 43656272
Alignment:
Q  8 aataataacataaaagttgatcttttttgcttatattttgagaca 52  Q
    |||||| |||||||||||||| |||||| ||||||||||||||||    
T  43656229 aataatgacataaaagttgat-ttttttccttatattttgagaca 43656272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 24439542 - 24439498
Alignment:
Q  8 aataataacataaaagttgatcttttttgcttatattttgagaca 52  Q
    |||||||||||||||||||||||||||||||||||||||| ||||    
T  24439542 aataataacataaaagttgatcttttttgcttatattttgcgaca 24439498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 42365006 - 42364965
Alignment:
Q  11 aataacataaaagttgatcttttttgcttatattttgagaca 52  Q
    |||||||||||||||| |||||||||||||||||||||||||    
T  42365006 aataacataaaagttggtcttttttgcttatattttgagaca 42364965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 8146202 - 8146246
Alignment:
Q  8 aataataacataaaagttgatcttttttgcttatattttgagaca 52  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||    
T  8146202 aataataacataaaagttggtcttttttgcttatattttaagaca 8146246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 35462907 - 35462951
Alignment:
Q  8 aataataacataaaagttgatcttttttgcttatattttgagaca 52  Q
    ||||||| ||||||||||| |||||||||||||||||||||||||    
T  35462907 aataatagcataaaagttggtcttttttgcttatattttgagaca 35462951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 46
Target Start/End: Original strand, 31316993 - 31317028
Alignment:
Q  11 aataacataaaagttgatcttttttgcttatatttt 46  Q
    ||||||||||||||||||||||||||||||||||||    
T  31316993 aataacataaaagttgatcttttttgcttatatttt 31317028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 31690809 - 31690859
Alignment:
Q  8 aataataacataaaagttgatcttttttgcttatattttgagacagaaaat 58  Q
    ||||||| ||||||||||| ||||||||| ||||||||||||||| |||||    
T  31690809 aataatagcataaaagttggtcttttttgtttatattttgagacaaaaaat 31690859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 8143904 - 8143855
Alignment:
Q  8 aataataacataaaagttgatcttttttgcttatattttgagacagaaaa 57  Q
    ||||||| ||||||||||||||||||||||||||||| || |||| ||||    
T  8143904 aataatagcataaaagttgatcttttttgcttatattatgggacaaaaaa 8143855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 30086737 - 30086781
Alignment:
Q  8 aataataacataaaagttgatcttttttgcttatattttgagaca 52  Q
    |||||| |||||||||||| |||||||| ||||||||||||||||    
T  30086737 aataatgacataaaagttggtcttttttacttatattttgagaca 30086781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 57
Target Start/End: Original strand, 8541753 - 8541802
Alignment:
Q  8 aataataacataaaagttgatcttttttgcttatattttgagacagaaaa 57  Q
    ||||||||||||||||||| ||||||||  ||||||||| ||||| ||||    
T  8541753 aataataacataaaagttggtctttttttgttatattttaagacaaaaaa 8541802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 48
Target Start/End: Complemental strand, 13146699 - 13146659
Alignment:
Q  8 aataataacataaaagttgatcttttttgcttatattttga 48  Q
    ||||||| ||||||||||| ||||||||| |||||||||||    
T  13146699 aataatagcataaaagttggtcttttttgtttatattttga 13146659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 30776639 - 30776683
Alignment:
Q  8 aataataacataaaagttgatcttttttgcttatattttgagaca 52  Q
    ||||||||||||||||||| |||||||||||||||||||||||||    
T  30776639 aataataacataaaagttggtcttttttgcttatattttgagaca 30776683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 30777452 - 30777408
Alignment:
Q  8 aataataacataaaagttgatcttttttgcttatattttgagaca 52  Q
    ||||||||||||||||||| |||||||||||||||||||||||||    
T  30777452 aataataacataaaagttggtcttttttgcttatattttgagaca 30777408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 3043322 - 3043366
Alignment:
Q  8 aataataacataaaagttgatcttttttgcttatattttgagaca 52  Q
    ||||||| ||||||||||||||||||| |||||||||||||||||    
T  3043322 aataatagcataaaagttgatctttttcgcttatattttgagaca 3043366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 29180567 - 29180611
Alignment:
Q  8 aataataacataaaagttgatcttttttgcttatattttgagaca 52  Q
    ||||||||||||||||||  |||||||||||||||||||||||||    
T  29180567 aataataacataaaagtttgtcttttttgcttatattttgagaca 29180611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 46
Target Start/End: Original strand, 9798230 - 9798268
Alignment:
Q  8 aataataacataaaagttgatcttttttgcttatatttt 46  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  9798230 aataatagcataaaagttgatcttttttgcttatatttt 9798268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 47806861 - 47806819
Alignment:
Q  10 taataacataaaagttgatcttttttgcttatattttgagaca 52  Q
    ||||| ||||||| |||||||||||||||||||||||||||||    
T  47806861 taatagcataaaaattgatcttttttgcttatattttgagaca 47806819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 50768407 - 50768366
Alignment:
Q  11 aataacataaaagttgatcttttttgcttatattttgagaca 52  Q
    |||| ||||||||||| |||||||||||||||||||||||||    
T  50768407 aatagcataaaagttggtcttttttgcttatattttgagaca 50768366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 9 - 46
Target Start/End: Complemental strand, 51495116 - 51495079
Alignment:
Q  9 ataataacataaaagttgatcttttttgcttatatttt 46  Q
    |||||| |||||||||||||||||||||||||||||||    
T  51495116 ataatagcataaaagttgatcttttttgcttatatttt 51495079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 30012108 - 30012152
Alignment:
Q  8 aataataacataaaagttgatcttttttgcttatattttgagaca 52  Q
    |||||||  ||||||||||||||||||||||||||||||| ||||    
T  30012108 aataatagaataaaagttgatcttttttgcttatattttgggaca 30012152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 32012482 - 32012526
Alignment:
Q  8 aataataacataaaagttgatcttttttgcttatattttgagaca 52  Q
    ||||||| ||||||||||  |||||||||||||||||||||||||    
T  32012482 aataatagcataaaagtttgtcttttttgcttatattttgagaca 32012526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 50
Target Start/End: Original strand, 38187883 - 38187923
Alignment:
Q  10 taataacataaaagttgatcttttttgcttatattttgaga 50  Q
    ||||| |||||||||||||||||||| ||||||||||||||    
T  38187883 taatagcataaaagttgatcttttttacttatattttgaga 38187923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 38940834 - 38940790
Alignment:
Q  8 aataataacataaaagttgatcttttttgcttatattttgagaca 52  Q
    ||||||| ||||||||||| | |||||||||||||||||||||||    
T  38940834 aataatagcataaaagttggtattttttgcttatattttgagaca 38940790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 53677634 - 53677678
Alignment:
Q  8 aataataacataaaagttgatcttttttgcttatattttgagaca 52  Q
    ||||||| ||||||||||| | |||||||||||||||||||||||    
T  53677634 aataatagcataaaagttggttttttttgcttatattttgagaca 53677678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 52
Target Start/End: Complemental strand, 26916297 - 26916262
Alignment:
Q  17 ataaaagttgatcttttttgcttatattttgagaca 52  Q
    ||||||||| ||||||||||||||||||||||||||    
T  26916297 ataaaagtttatcttttttgcttatattttgagaca 26916262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 49080215 - 49080178
Alignment:
Q  17 ataaaagttgatcttttttgcttatattttgagacaga 54  Q
    |||||||||||||||||||||||||| |||| ||||||    
T  49080215 ataaaagttgatcttttttgcttataatttgggacaga 49080178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 49901992 - 49901947
Alignment:
Q  8 aataataacataaaagtt-gatcttttttgcttatattttgagaca 52  Q
    |||||||||||||||||| | | |||||||||||||||||||||||    
T  49901992 aataataacataaaagtttgtttttttttgcttatattttgagaca 49901947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 11 - 52
Target Start/End: Original strand, 55937861 - 55937902
Alignment:
Q  11 aataacataaaagttgatcttttttgcttatattttgagaca 52  Q
    |||| ||||||||||| ||||||||||||||||||| |||||    
T  55937861 aatatcataaaagttggtcttttttgcttatattttaagaca 55937902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 39970144 - 39970188
Alignment:
Q  8 aataataacataaaagttgatcttttttgcttatattttgagaca 52  Q
    ||||||| ||||||| ||  |||||||||||||||||||||||||    
T  39970144 aataatagcataaaaattagtcttttttgcttatattttgagaca 39970188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 52713028 - 52712984
Alignment:
Q  8 aataataacataaaagttgatcttttttgcttatattttgagaca 52  Q
    ||||||| ||||||| ||| |||||||| ||||||||||||||||    
T  52713028 aataatagcataaaaattggtcttttttacttatattttgagaca 52712984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 21654213 - 21654169
Alignment:
Q  8 aataataacataaaagttgatcttttttgcttatattttgagaca 52  Q
    ||||||||||||||||||| |||||||||||||||||||||||||    
T  21654213 aataataacataaaagttggtcttttttgcttatattttgagaca 21654169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 57
Target Start/End: Complemental strand, 43575924 - 43575878
Alignment:
Q  11 aataacataaaagttgatcttttttgcttatattttgagacagaaaa 57  Q
    |||| ||||||||||||||||||||||||||||||||||||| ||||    
T  43575924 aatagcataaaagttgatcttttttgcttatattttgagacaaaaaa 43575878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 49067080 - 49067038
Alignment:
Q  10 taataacataaaagttgatcttttttgcttatattttgagaca 52  Q
    ||||| |||||||||||||||||||||||||||||||||||||    
T  49067080 taatagcataaaagttgatcttttttgcttatattttgagaca 49067038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 45781363 - 45781322
Alignment:
Q  11 aataacataaaagttgatcttttttgcttatattttgagaca 52  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  45781363 aatagcataaaagttgatcttttttgcttatattttgagaca 45781322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 51255154 - 51255113
Alignment:
Q  11 aataacataaaagttgatcttttttgcttatattttgagaca 52  Q
    ||||||||||||||||||||||||| ||||||||||||||||    
T  51255154 aataacataaaagttgatcttttttacttatattttgagaca 51255113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 1335079 - 1335035
Alignment:
Q  8 aataataacataaaagttgatcttttttgcttatattttgagaca 52  Q
    ||||||||||||||| ||| |||||||||||||||||||||||||    
T  1335079 aataataacataaaaattggtcttttttgcttatattttgagaca 1335035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 13541246 - 13541202
Alignment:
Q  8 aataataacataaaagttgatcttttttgcttatattttgagaca 52  Q
    ||||||||||||||||||| |||||||| ||||||||||||||||    
T  13541246 aataataacataaaagttggtctttttttcttatattttgagaca 13541202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 16739306 - 16739350
Alignment:
Q  8 aataataacataaaagttgatcttttttgcttatattttgagaca 52  Q
    ||||||| ||||||||||| |||||||||||||||||||||||||    
T  16739306 aataatagcataaaagttggtcttttttgcttatattttgagaca 16739350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 45347828 - 45347863
Alignment:
Q  17 ataaaagttgatcttttttgcttatattttgagaca 52  Q
    ||||||||||||||||||||||||||||||||||||    
T  45347828 ataaaagttgatcttttttgcttatattttgagaca 45347863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 28793127 - 28793086
Alignment:
Q  11 aataacataaaagttgatcttttttgcttatattttgagaca 52  Q
    |||| ||||||||||| |||||||||||||||||||||||||    
T  28793127 aatagcataaaagttggtcttttttgcttatattttgagaca 28793086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 51426583 - 51426542
Alignment:
Q  11 aataacataaaagttgatcttttttgcttatattttgagaca 52  Q
    |||||||||||||||| ||||||||||||||||||| |||||    
T  51426583 aataacataaaagttggtcttttttgcttatattttaagaca 51426542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 23513536 - 23513492
Alignment:
Q  8 aataataacataaaagttgatcttttttgcttatattttgagaca 52  Q
    ||||||| ||||||||||| | |||||||||||||||||||||||    
T  23513536 aataatagcataaaagttggtattttttgcttatattttgagaca 23513492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 26641263 - 26641307
Alignment:
Q  8 aataataacataaaagttgatcttttttgcttatattttgagaca 52  Q
    ||||||| ||||||||||| | |||||||||||||||||||||||    
T  26641263 aataatagcataaaagttggtgttttttgcttatattttgagaca 26641307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 47
Target Start/End: Complemental strand, 34105509 - 34105473
Alignment:
Q  11 aataacataaaagttgatcttttttgcttatattttg 47  Q
    |||||||||||||||||||||||||| ||||||||||    
T  34105509 aataacataaaagttgatcttttttgtttatattttg 34105473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 37324239 - 37324283
Alignment:
Q  8 aataataacataaaagttgatcttttttgcttatattttgagaca 52  Q
    |||||| |||||||||||| ||||||||||||||||||| |||||    
T  37324239 aataatgacataaaagttggtcttttttgcttatattttaagaca 37324283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 46
Target Start/End: Complemental strand, 52252010 - 52251978
Alignment:
Q  14 aacataaaagttgatcttttttgcttatatttt 46  Q
    |||||||||||||||||||||||||||||||||    
T  52252010 aacataaaagttgatcttttttgcttatatttt 52251978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 8 - 47
Target Start/End: Original strand, 36189158 - 36189197
Alignment:
Q  8 aataataacataaaagttgatcttttttgcttatattttg 47  Q
    |||||||||||||||| || ||||||||||||||||||||    
T  36189158 aataataacataaaagatggtcttttttgcttatattttg 36189197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 46
Target Start/End: Original strand, 46296231 - 46296266
Alignment:
Q  11 aataacataaaagttgatcttttttgcttatatttt 46  Q
    |||| |||||||||||||||||||||||||||||||    
T  46296231 aatagcataaaagttgatcttttttgcttatatttt 46296266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 53020151 - 53020101
Alignment:
Q  8 aataataacataaaagttgatcttttttgcttatattttgagacagaaaat 58  Q
    ||||||| ||||||||||| | |||||| |||||||||||||||| |||||    
T  53020151 aataatagcataaaagttggtattttttacttatattttgagacaaaaaat 53020101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 46820015 - 46819974
Alignment:
Q  11 aataacataaaagttgatcttttttgcttatattttgagaca 52  Q
    |||| ||||||||||||||||||||  |||||||||||||||    
T  46820015 aatagcataaaagttgatcttttttatttatattttgagaca 46819974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 52
Target Start/End: Complemental strand, 31126173 - 31126137
Alignment:
Q  16 cataaaagttgatcttttttgcttatattttgagaca 52  Q
    ||||||||||| ||||||||| |||||||||||||||    
T  31126173 cataaaagttggtcttttttgtttatattttgagaca 31126137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 52
Target Start/End: Complemental strand, 46580497 - 46580461
Alignment:
Q  16 cataaaagttgatcttttttgcttatattttgagaca 52  Q
    ||||||||||| |||||||| ||||||||||||||||    
T  46580497 cataaaagttggtcttttttacttatattttgagaca 46580461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 49583925 - 49583885
Alignment:
Q  17 ataaaagttgatcttttttgcttatattttgagacagaaaa 57  Q
    |||||||||| ||||||||||||||| |||| |||||||||    
T  49583925 ataaaagttggtcttttttgcttataatttgggacagaaaa 49583885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 55400707 - 55400663
Alignment:
Q  8 aataataacataaaagttgatcttttttgcttatattttgagaca 52  Q
    ||||||| |||||||||   |||||||||||||||||||||||||    
T  55400707 aataatagcataaaagtaagtcttttttgcttatattttgagaca 55400663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 792544 - 792588
Alignment:
Q  8 aataataacataaaagttgatcttttttgcttatattttgagaca 52  Q
    ||||||||||||||||||| |||||||||||||||||||||||||    
T  792544 aataataacataaaagttggtcttttttgcttatattttgagaca 792588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 21539725 - 21539681
Alignment:
Q  8 aataataacataaaagttgatcttttttgcttatattttgagaca 52  Q
    ||||||||||||||||||| |||||||||||||||||||||||||    
T  21539725 aataataacataaaagttggtcttttttgcttatattttgagaca 21539681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 38549831 - 38549875
Alignment:
Q  8 aataataacataaaagttgatcttttttgcttatattttgagaca 52  Q
    ||||||| |||||||||||||||||||||||||||||||||||||    
T  38549831 aataatagcataaaagttgatcttttttgcttatattttgagaca 38549875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 55
Target Start/End: Complemental strand, 44803867 - 44803820
Alignment:
Q  8 aataataacataaaagttgatcttttttgcttatattttgagacagaa 55  Q
    |||||||||||||||||| ||||||||| |||||||||||||||||||    
T  44803867 aataataacataaaagtttatcttttttacttatattttgagacagaa 44803820  T

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Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 4033863 - 4033907
Alignment:
Q  8 aataataacataaaagttgatcttttttgcttatattttgagaca 52  Q
    ||||||| ||||||| |||||||||||||||||||||||||||||    
T  4033863 aataatagcataaaaattgatcttttttgcttatattttgagaca 4033907  T

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Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 29514207 - 29514251
Alignment:
Q  8 aataataacataaaagttgatcttttttgcttatattttgagaca 52  Q
    ||||||| ||||||||||| |||||||||||||||||||||||||    
T  29514207 aataatagcataaaagttggtcttttttgcttatattttgagaca 29514251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 15068711 - 15068670
Alignment:
Q  11 aataacataaaagttgatcttttttgcttatattttgagaca 52  Q
    ||||| |||||| |||||||||||||||||||||||||||||    
T  15068711 aataatataaaaattgatcttttttgcttatattttgagaca 15068670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 33635301 - 33635260
Alignment:
Q  11 aataacataaaagttgatcttttttgcttatattttgagaca 52  Q
    |||| ||||||||||| |||||||||||||||||||||||||    
T  33635301 aatagcataaaagttggtcttttttgcttatattttgagaca 33635260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 8784363 - 8784319
Alignment:
Q  8 aataataacataaaagttgatcttttttgcttatattttgagaca 52  Q
    ||||||| ||||||||||| |||||||| ||||||||||||||||    
T  8784363 aataatagcataaaagttggtcttttttacttatattttgagaca 8784319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 14565562 - 14565606
Alignment:
Q  8 aataataacataaaagttgatcttttttgcttatattttgagaca 52  Q
    ||||||| ||||||||||  |||||||||||||||||||||||||    
T  14565562 aataatagcataaaagttagtcttttttgcttatattttgagaca 14565606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 18834100 - 18834144
Alignment:
Q  8 aataataacataaaagttgatcttttttgcttatattttgagaca 52  Q
    |||||||  ||||||||||||||||||||||||||||||| ||||    
T  18834100 aataatagaataaaagttgatcttttttgcttatattttgggaca 18834144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 28424242 - 28424198
Alignment:
Q  8 aataataacataaaagttgatcttttttgcttatattttgagaca 52  Q
    ||||||| ||||||||||| ||||||||||||| |||||||||||    
T  28424242 aataatagcataaaagttggtcttttttgcttaaattttgagaca 28424198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 28492488 - 28492444
Alignment:
Q  8 aataataacataaaagttgatcttttttgcttatattttgagaca 52  Q
    ||||||| ||||||||||| ||||||||||||||||||| |||||    
T  28492488 aataatagcataaaagttggtcttttttgcttatattttaagaca 28492444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 43075718 - 43075668
Alignment:
Q  8 aataataacataaaagttgatcttttttgcttatattttgagacagaaaat 58  Q
    ||||||| ||||||||||| | ||||||||||||||||||| ||| |||||    
T  43075718 aataatagcataaaagttggtattttttgcttatattttgacacaaaaaat 43075668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 11 - 48
Target Start/End: Complemental strand, 43451481 - 43451444
Alignment:
Q  11 aataacataaaagttgatcttttttgcttatattttga 48  Q
    |||||||||||| |||||||||||| ||||||||||||    
T  43451481 aataacataaaaattgatcttttttacttatattttga 43451444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 4091978 - 4091934
Alignment:
Q  8 aataataacataaaagttgatcttttttgcttatattttgagaca 52  Q
    ||||||| ||||||||||| | ||| |||||||||||||||||||    
T  4091978 aataatagcataaaagttggtttttcttgcttatattttgagaca 4091934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 15858798 - 15858842
Alignment:
Q  8 aataataacataaaagttgatcttttttgcttatattttgagaca 52  Q
    ||||||| ||||||| ||| |||||||| ||||||||||||||||    
T  15858798 aataatagcataaaatttggtcttttttacttatattttgagaca 15858842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 29514663 - 29514706
Alignment:
Q  8 aataataacataaaagttgatcttttttgcttatattttgagaca 52  Q
    ||||||| ||||||||||| |||||||| ||||||||||||||||    
T  29514663 aataatagcataaaagttggtctttttt-cttatattttgagaca 29514706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0495 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0495
Description:

Target: scaffold0495; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 4599 - 4555
Alignment:
Q  8 aataataacataaaagttgatcttttttgcttatattttgagaca 52  Q
    ||||||| ||||||||||| |||||||||||||||||||||||||    
T  4599 aataatagcataaaagttggtcttttttgcttatattttgagaca 4555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 11044028 - 11043984
Alignment:
Q  8 aataataacataaaagttgatcttttttgcttatattttgagaca 52  Q
    ||||||| ||||||||||| |||||||||||||||||||||||||    
T  11044028 aataatagcataaaagttggtcttttttgcttatattttgagaca 11043984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 24612670 - 24612714
Alignment:
Q  8 aataataacataaaagttgatcttttttgcttatattttgagaca 52  Q
    ||||||| ||||||||||| |||||||||||||||||||||||||    
T  24612670 aataatagcataaaagttggtcttttttgcttatattttgagaca 24612714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 35260028 - 35259984
Alignment:
Q  8 aataataacataaaagttgatcttttttgcttatattttgagaca 52  Q
    ||||||| ||||||||||| |||||||||||||||||||||||||    
T  35260028 aataatagcataaaagttggtcttttttgcttatattttgagaca 35259984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 37598041 - 37597997
Alignment:
Q  8 aataataacataaaagttgatcttttttgcttatattttgagaca 52  Q
    ||||| ||||||||||||| |||||||||||||||||||||||||    
T  37598041 aataacaacataaaagttggtcttttttgcttatattttgagaca 37597997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 43
Target Start/End: Original strand, 44358681 - 44358716
Alignment:
Q  8 aataataacataaaagttgatcttttttgcttatat 43  Q
    ||||||||||||||||||||||||||||||||||||    
T  44358681 aataataacataaaagttgatcttttttgcttatat 44358716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 46
Target Start/End: Original strand, 32678699 - 32678737
Alignment:
Q  8 aataataacataaaagttgatcttttttgcttatatttt 46  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  32678699 aataataacataaaagtttatcttttttgcttatatttt 32678737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 49
Target Start/End: Original strand, 33851216 - 33851254
Alignment:
Q  11 aataacataaaagttgatcttttttgcttatattttgag 49  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  33851216 aatagcataaaagttgatcttttttgcttatattttgag 33851254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 50
Target Start/End: Complemental strand, 44052591 - 44052549
Alignment:
Q  8 aataataacataaaagttgatcttttttgcttatattttgaga 50  Q
    ||||||||||||||||||| | |||||||||||||||||||||    
T  44052591 aataataacataaaagttggttttttttgcttatattttgaga 44052549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 52
Target Start/End: Original strand, 25321779 - 25321820
Alignment:
Q  11 aataacataaaagttgatcttttttgcttatattttgagaca 52  Q
    |||| ||||||||||| |||||||||||||||||||||||||    
T  25321779 aatagcataaaagttggtcttttttgcttatattttgagaca 25321820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 35344337 - 35344293
Alignment:
Q  8 aataataacataaaagttgatcttttttgcttatattttgagaca 52  Q
    ||||||| ||||||| ||| |||||||||||||||||||||||||    
T  35344337 aataatagcataaaaattggtcttttttgcttatattttgagaca 35344293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 35346494 - 35346538
Alignment:
Q  8 aataataacataaaagttgatcttttttgcttatattttgagaca 52  Q
    ||||||| ||||||||||||||||||||  |||||||||||||||    
T  35346494 aataatagcataaaagttgatcttttttatttatattttgagaca 35346538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 27752554 - 27752513
Alignment:
Q  11 aataacataaaagttgatcttttttgcttatattttgagaca 52  Q
    |||| ||||||||||| ||||||||| |||||||||||||||    
T  27752554 aatagcataaaagttggtcttttttgtttatattttgagaca 27752513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 11 - 52
Target Start/End: Original strand, 31133777 - 31133818
Alignment:
Q  11 aataacataaaagttgatcttttttgcttatattttgagaca 52  Q
    |||| ||||||||||| |||||||| ||||||||||||||||    
T  31133777 aatagcataaaagttggtctttttttcttatattttgagaca 31133818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 36538026 - 36537985
Alignment:
Q  11 aataacataaaagttgatcttttttgcttatattttgagaca 52  Q
    |||| ||||||||||  |||||||||||||||||||||||||    
T  36538026 aatagcataaaagtttgtcttttttgcttatattttgagaca 36537985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 27621101 - 27621057
Alignment:
Q  8 aataataacataaaagttgatcttttttgcttatattttgagaca 52  Q
    ||||||| ||||||||||  |||||||||||||||| ||||||||    
T  27621101 aataatagcataaaagtttgtcttttttgcttatatattgagaca 27621057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 55
Target Start/End: Complemental strand, 39187204 - 39187156
Alignment:
Q  8 aataataacataaaagtt-gatcttttttgcttatattttgagacagaa 55  Q
    ||||||| |||||||||| | | ||||||||||||||||||||||||||    
T  39187204 aataatagcataaaagtttgtttttttttgcttatattttgagacagaa 39187156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 41809022 - 41809062
Alignment:
Q  17 ataaaagttgatcttttttgcttatattttgagacagaaaa 57  Q
    |||||||||  ||||||||||||||||||||||||| ||||    
T  41809022 ataaaagtttgtcttttttgcttatattttgagacaaaaaa 41809062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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