View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4621-Insertion-8 (Length: 70)

Name: NF4621-Insertion-8
Description: NF4621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4621-Insertion-8
NF4621-Insertion-8
[»] chr4 (2 HSPs)
chr4 (7-70)||(41943018-41943081)
chr4 (7-70)||(10336084-10336147)
[»] chr1 (1 HSPs)
chr1 (7-70)||(31654575-31654638)
[»] scaffold0016 (1 HSPs)
scaffold0016 (7-70)||(107947-108010)
[»] chr8 (2 HSPs)
chr8 (7-70)||(9818178-9818241)
chr8 (7-70)||(42077472-42077535)
[»] chr7 (1 HSPs)
chr7 (7-70)||(10530141-10530204)
[»] scaffold0028 (1 HSPs)
scaffold0028 (37-70)||(148397-148430)


Alignment Details
Target: chr4 (Bit Score: 40; Significance: 0.00000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 70
Target Start/End: Complemental strand, 41943081 - 41943018
Alignment:
Q  7 aaagatttattgtgttttattannnnnnnngtagttgctaattataagaattggtgagttgcaa 70  Q
    ||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||    
T  41943081 aaagatttattgtgttttattatttttcttgtagttgctaattataagaattggtgagttgcaa 41943018  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 70
Target Start/End: Complemental strand, 10336147 - 10336084
Alignment:
Q  7 aaagatttattgtgttttattannnnnnnngtagttgctaattataagaattggtgagttgcaa 70  Q
    ||||||||| ||||||||||||        |||||||| |||||||||||||||||||||||||    
T  10336147 aaagatttagtgtgttttattatttttcttgtagttgcaaattataagaattggtgagttgcaa 10336084  T

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Target: chr1 (Bit Score: 40; Significance: 0.00000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 70
Target Start/End: Complemental strand, 31654638 - 31654575
Alignment:
Q  7 aaagatttattgtgttttattannnnnnnngtagttgctaattataagaattggtgagttgcaa 70  Q
    ||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||    
T  31654638 aaagatttattgtgttttattatttttcttgtagttgctaattataagaattggtgagttgcaa 31654575  T

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Target: scaffold0016 (Bit Score: 36; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 36; E-Value: 0.000000000005
Query Start/End: Original strand, 7 - 70
Target Start/End: Original strand, 107947 - 108010
Alignment:
Q  7 aaagatttattgtgttttattannnnnnnngtagttgctaattataagaattggtgagttgcaa 70  Q
    ||||||||||||| ||||||||        ||||||||||||||||||||||||||||||||||    
T  107947 aaagatttattgtattttattatttttgttgtagttgctaattataagaattggtgagttgcaa 108010  T

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Target: chr8 (Bit Score: 36; Significance: 0.000000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.000000000005
Query Start/End: Original strand, 7 - 70
Target Start/End: Complemental strand, 9818241 - 9818178
Alignment:
Q  7 aaagatttattgtgttttattannnnnnnngtagttgctaattataagaattggtgagttgcaa 70  Q
    |||||||||| |||||||||||        ||||||||||||||||||||||||||||||||||    
T  9818241 aaagatttatcgtgttttattatttttcttgtagttgctaattataagaattggtgagttgcaa 9818178  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.000000000005
Query Start/End: Original strand, 7 - 70
Target Start/End: Complemental strand, 42077535 - 42077472
Alignment:
Q  7 aaagatttattgtgttttattannnnnnnngtagttgctaattataagaattggtgagttgcaa 70  Q
    ||||||||||||||||||||||        ||||||| ||||||||||||||||||||||||||    
T  42077535 aaagatttattgtgttttattatttttcttgtagttgttaattataagaattggtgagttgcaa 42077472  T

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Target: chr7 (Bit Score: 36; Significance: 0.000000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.000000000005
Query Start/End: Original strand, 7 - 70
Target Start/End: Complemental strand, 10530204 - 10530141
Alignment:
Q  7 aaagatttattgtgttttattannnnnnnngtagttgctaattataagaattggtgagttgcaa 70  Q
    |||||||||| |||||||||||        ||||||||||||||||||||||||||||||||||    
T  10530204 aaagatttatcgtgttttattatttttcttgtagttgctaattataagaattggtgagttgcaa 10530141  T

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Target: scaffold0028 (Bit Score: 34; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 34; E-Value: 0.00000000008
Query Start/End: Original strand, 37 - 70
Target Start/End: Complemental strand, 148430 - 148397
Alignment:
Q  37 gtagttgctaattataagaattggtgagttgcaa 70  Q
    ||||||||||||||||||||||||||||||||||    
T  148430 gtagttgctaattataagaattggtgagttgcaa 148397  T

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