View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4621_low_2 (Length: 278)
Name: NF4621_low_2
Description: NF4621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4621_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 22 - 259
Target Start/End: Complemental strand, 11769783 - 11769548
Alignment:
| Q |
22 |
aggcttgcatctaagaattgtgtaaaagtctaactaaaaatgtttgaacatagcgtgtgggacttgaaaataaaaactctgagttccatatttggataat |
121 |
Q |
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| T |
11769783 |
aggcttgcatctaagaattgtgtaaaagtctaactaaaaatgtttgaagatagcgtgtgggacttgaaaataaaaact--gagttccatatttggataat |
11769686 |
T |
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| Q |
122 |
atactatactatagtacgtctaatttgaaaaatactaaagtctcacattgcttatacccacattggttagttttcaacattatgtaaggagtgctcatga |
221 |
Q |
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| T |
11769685 |
atagcatactatagtacgtctaatttgaaaaatactaaagtctcacattgcttatacccacattggttagttttcaacattatgtaaggagtgctcatga |
11769586 |
T |
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| Q |
222 |
ctcttttaaagtgcatcaatgctttaaacatttccaaa |
259 |
Q |
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| T |
11769585 |
ctcttttaaagtgcatcaatgctttagacatttccaaa |
11769548 |
T |
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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 43544176 - 43544130
Alignment:
| Q |
181 |
acattggttagttttcaacattatgtaaggagtgctcatgactcttt |
227 |
Q |
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| T |
43544176 |
acattggttatttttcaacattatataaggagtgctcatggctcttt |
43544130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 180 - 227
Target Start/End: Complemental strand, 8977459 - 8977412
Alignment:
| Q |
180 |
cacattggttagttttcaacattatgtaaggagtgctcatgactcttt |
227 |
Q |
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| T |
8977459 |
cacattggttagtttccaacattatataaggagtgttcacgactcttt |
8977412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 180 - 227
Target Start/End: Original strand, 7583900 - 7583947
Alignment:
| Q |
180 |
cacattggttagttttcaacattatgtaaggagtgctcatgactcttt |
227 |
Q |
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||||||||||||||| ||||||||| ||||||||| ||| |||||||| |
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| T |
7583900 |
cacattggttagtttccaacattatataaggagtgttcacgactcttt |
7583947 |
T |
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