View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4621_low_3 (Length: 216)
Name: NF4621_low_3
Description: NF4621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4621_low_3 |
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| [»] chr6 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 118; Significance: 2e-60; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 9 - 146
Target Start/End: Complemental strand, 17514088 - 17513952
Alignment:
| Q |
9 |
acatcatcatgagaataaataagtactttacaatggaacctaccttctctttatttgagatccaatttatgctattcaatccttctaagatcaactattt |
108 |
Q |
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| T |
17514088 |
acatcatcatga-aataaataagtactttacaatggaacctaccttgtctttatttgagatccaatttatgctattcaatccttctaagatcaacacttt |
17513990 |
T |
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| Q |
109 |
gaagaacatgatatcgagacaacaacatcatttgaata |
146 |
Q |
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| T |
17513989 |
gaagaacatgatatcgagacaacaacatcatttgaata |
17513952 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 76 - 216
Target Start/End: Complemental strand, 17513546 - 17513405
Alignment:
| Q |
76 |
tatgctattcaatccttctaagatcaactatttgaagaacatgatatcgagacaacaacatcatttgaatagattag-nnnnnnntaattgattatttaa |
174 |
Q |
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| T |
17513546 |
tatgctattcaatccttctaagatcaactatttgaagaacatgatatcgagacaacaacatcatttgaatagattagaaaaaaaataattgattatttaa |
17513447 |
T |
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| Q |
175 |
atgatcaccactgaaattatgaattcacacacttcatctatt |
216 |
Q |
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| T |
17513446 |
atgatcaccgttgaaattatgaattcacacacttcatctatt |
17513405 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 86 - 152
Target Start/End: Complemental strand, 17513681 - 17513615
Alignment:
| Q |
86 |
aatccttctaagatcaactatttgaagaacatgatatcgagacaacaacatcatttgaatagattag |
152 |
Q |
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| T |
17513681 |
aatccttctaagatcaactatttgaagaacatgatatcgagacaacaacatcatttgaatagattag |
17513615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 169 - 216
Target Start/End: Complemental strand, 17513949 - 17513902
Alignment:
| Q |
169 |
atttaaatgatcaccactgaaattatgaattcacacacttcatctatt |
216 |
Q |
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| T |
17513949 |
atttaaatgatcaccattgaaattatgaattcacacacttcatctatt |
17513902 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 112; Significance: 8e-57; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 23 - 216
Target Start/End: Original strand, 1092470 - 1092662
Alignment:
| Q |
23 |
ataaataagtactttacaatggaacctaccttctctttatttgagatccaatttatgctattcaatccttctaagatcaactatttgaagaacatgatat |
122 |
Q |
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| T |
1092470 |
ataaataagtacttgacaatggaacctacctcgtctttatttgagatccaatttacactattcaattcttctaagatcaactattagaagaacatgatat |
1092569 |
T |
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| Q |
123 |
cgagacaacaacatcatttgaatagattagnnnnnnntaattgattatttaaatgatcaccactgaaattatgaattcacacacttcatctatt |
216 |
Q |
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| T |
1092570 |
ccagacaacaacatcatttgaatagattag-aaaaaataattgatcatttaaatgatcatcgttgagattatgaattcatacacttcatctatt |
1092662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 9 - 216
Target Start/End: Original strand, 11232308 - 11232510
Alignment:
| Q |
9 |
acatcatcatgagaataaataagtactttacaatggaacctaccttctctttatttgagatccaatttatgctattcaatccttctaagatcaactattt |
108 |
Q |
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| T |
11232308 |
acatcatcatgaga-taaataagtacttcacaacgaaacctacctcgtctctatttgagatccaatttatactattaaatccttctaagatcaactatta |
11232406 |
T |
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| Q |
109 |
gaagaacatgatatcgagacaacaacatcatttgaatagattagnnnnnnntaattgattatttaaatgatcaccactgaaattatgaattcacacactt |
208 |
Q |
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| T |
11232407 |
gaaacacatgatatcgagacaacaa---catttggatagattag-aaaaaataattgctcgtttaaatgaccgccattgagattatgaatacacacactt |
11232502 |
T |
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| Q |
209 |
catctatt |
216 |
Q |
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|||||||| |
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| T |
11232503 |
catctatt |
11232510 |
T |
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