View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4622-Insertion-1 (Length: 1089)
Name: NF4622-Insertion-1
Description: NF4622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4622-Insertion-1 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 507; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 7 - 537
Target Start/End: Complemental strand, 44995792 - 44995262
Alignment:
| Q |
7 |
atattgcacttgagtatttggaaaatgtttatggaatcacgccaatagtagaagatgtaagcataaaattcagtattgttcattcatatggttttaaagt |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
44995792 |
atattgcacttgagtatttggaaaatgtttatggaatcacgccaatagtagaagatgtaagcataaaattcagtattgttcgttcatatggttttaaagt |
44995693 |
T |
|
| Q |
107 |
gcagctgtggttatgctatgaccctatatactgtcgaaaaatgcagctaatgcgatcaaaattgtcgttgtgatgcttcatagactttaaaattattcac |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |
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|
| T |
44995692 |
gcagctgtggttatgctatgaccctatatactgtcgaaaaatgcagctaatgcgatcaaaattgtcgttgtgatactgcatagactttaaaattattcat |
44995593 |
T |
|
| Q |
207 |
atttaggctcttgataggtatgtatgtgactattgttgtgttttcgtgtaaggtttgggtttatgggaatagcttcaagtctgtgctagttgcagtagta |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44995592 |
atttaggctcttgataggtatgtatgtgactattgttgtgttttcgtgtaaggtttgggtttatgggaatagcttcaagtctgtgctagttgcagtagta |
44995493 |
T |
|
| Q |
307 |
gttccaaatgaagaaatcaccaagaaatgggcatacacaaatggtttcgtgggttctttctctgaactttgctctcttgacgagttcaagaaatatgtgt |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44995492 |
gttccaaatgaagaaatcaccaagaaatgggcatacacaaatggtttcgtgggttctttctctgaactttgctctcttgacgagttcaagaaatatgtgt |
44995393 |
T |
|
| Q |
407 |
tatctgaattgaagttgactgctgagagaaacaaggtaacatataaggatcctgaaataattcaaataaatgaaccaattgtatatttcttatgttattt |
506 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
44995392 |
tatctgaattgaagttgactgctgagagaaacaaggtaacatataaggatcctgaaataattcaaataaatgaaccaattgtatatttcttgtgttattt |
44995293 |
T |
|
| Q |
507 |
tcttcaagcacttattatttaagtagctgtg |
537 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |
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|
| T |
44995292 |
tcttcaagcacttattatttaagtacctgtg |
44995262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 599 - 1089
Target Start/End: Complemental strand, 44995200 - 44994702
Alignment:
| Q |
599 |
gctatcattgagaacttatagaaataagatgaaaataacttattagtctgtcataagttgtttctataagctctaacagatgtttaaagtagtagataag |
698 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |||||||| |
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|
| T |
44995200 |
gctatcattgagaacttatagaaataagatgaaaataacttattagtctgtcataagttatttccataagctctaacagatgtttaaagtaatagataag |
44995101 |
T |
|
| Q |
699 |
ttcaaataagtcaattcaaatacgctcttgattaggtgcttcaataannnnnnncttcttttattgttgttttcaatgtaccagcttaagggctttgaac |
798 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
44995100 |
ttcaaataagtcaattcaaatacgctcttgattaggtgcttcaataatttttttcttcttttattgttcttttcaatgtaccagcttaagggctttgaac |
44995001 |
T |
|
| Q |
799 |
aaataaaaggtgtcatattagatccacatccatttgatatggaaagagacttggtgactgcaacattgaaaaagagaagaaacaatatgctcaagtatta |
898 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44995000 |
aaataaaaggtgtcatattagatccacatccatttgatatggaaagagacttggtgacagcaacattgaaaaagagaagaaacaatatgctcaagtatta |
44994901 |
T |
|
| Q |
899 |
tcaggtaatctgatatccttttctcac-ttttcatttgctcttttcagggtcctttttatgtactactacatatttcaatttctgac-aattgttgatat |
996 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |
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|
| T |
44994900 |
tcaggtaatctgatatccttttctcactttttcatttgctcttttcagggtcctttttatgtactactacatatgtcaatttctgacaaattgttgatat |
44994801 |
T |
|
| Q |
997 |
atttcaaacag--tgaaatagatggagtatatcaaagatc-acgggagaatagcat--aatttgagatttcatgccgaataaga-tgttcagtattagt |
1089 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
44994800 |
atttcaaacaggttgaaatagatgaagtatatcaaagatcaacgggagataagcataaaatttgagatttcatgccgaataagattgttcagtattagt |
44994702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 953 - 1006
Target Start/End: Original strand, 44953752 - 44953806
Alignment:
| Q |
953 |
tttatgtactactacatatttcaatttctgac-aattgttgatatatttcaaaca |
1006 |
Q |
| |
|
|||| |||||||||||||||||||||||| || |||||||||||||||||||||| |
|
|
| T |
44953752 |
tttaagtactactacatatttcaatttctaacaaattgttgatatatttcaaaca |
44953806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 599 - 672
Target Start/End: Complemental strand, 42281566 - 42281493
Alignment:
| Q |
599 |
gctatcattgagaacttatagaaataagatgaaaataacttattagtctgtcataagttgtttctataagctct |
672 |
Q |
| |
|
||||||| ||||| |||||||||||||| |||||| || ||||| ||||||||| |||||||||||||||| |
|
|
| T |
42281566 |
gctatcactgagagcttatagaaataagctgaaaacaaattatttacatgtcataagctgtttctataagctct |
42281493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 687 - 720
Target Start/End: Original strand, 35267467 - 35267500
Alignment:
| Q |
687 |
gtagtagataagttcaaataagtcaattcaaata |
720 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| |
|
|
| T |
35267467 |
gtagtagataagctcaaataagtcaattcaaata |
35267500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 68; Significance: 8e-30; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 8e-30
Query Start/End: Original strand, 786 - 905
Target Start/End: Original strand, 38769300 - 38769419
Alignment:
| Q |
786 |
aagggctttgaacaaataaaaggtgtcatattagatccacatccatttgatatggaaagagacttggtgactgcaacattgaaaaagagaagaaacaata |
885 |
Q |
| |
|
||||| |||||||| || ||||| || |||||||| || | ||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||| | |
|
|
| T |
38769300 |
aagggatttgaacatatcaaaggggtaatattagacccgcttccatttgatatggaaagagacttggtaactgcaacattgaaaaagaaaaggaacaaca |
38769399 |
T |
|
| Q |
886 |
tgctcaagtattatcaggta |
905 |
Q |
| |
|
|||||||||||||| ||||| |
|
|
| T |
38769400 |
tgctcaagtattataaggta |
38769419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 260 - 320
Target Start/End: Original strand, 38768725 - 38768785
Alignment:
| Q |
260 |
tttgggtttatgggaatagcttcaagtctgtgctagttgcagtagtagttccaaatgaaga |
320 |
Q |
| |
|
||||||| |||||||||||||||||||| |||| |||||||||||||||||||||||||| |
|
|
| T |
38768725 |
tttgggtatatgggaatagcttcaagtcaatgctggttgcagtagtagttccaaatgaaga |
38768785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 599 - 672
Target Start/End: Complemental strand, 30259538 - 30259465
Alignment:
| Q |
599 |
gctatcattgagaacttatagaaataagatgaaaataacttattagtctgtcataagttgtttctataagctct |
672 |
Q |
| |
|
|||||||| |||| ||||| |||||||| |||||| || ||||| |||| ||||||||||||||||||||| |
|
|
| T |
30259538 |
gctatcatggagagcttatggaaataagttgaaaacaatttattgacatgtcgtaagttgtttctataagctct |
30259465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 599 - 661
Target Start/End: Original strand, 46110221 - 46110283
Alignment:
| Q |
599 |
gctatcattgagaacttatagaaataagatgaaaataacttattagtctgtcataagttgttt |
661 |
Q |
| |
|
||||| ||||||| |||||||||||||| |||||| ||||||| ||| | ||||||||||||| |
|
|
| T |
46110221 |
gctatgattgagagcttatagaaataagctgaaaacaacttatgagtatatcataagttgttt |
46110283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000006; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 608 - 672
Target Start/End: Original strand, 8010384 - 8010448
Alignment:
| Q |
608 |
gagaacttatagaaataagatgaaaataacttattagtctgtcataagttgtttctataagctct |
672 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||| | |||||| ||||||||||||||||||| |
|
|
| T |
8010384 |
gagaacttatagaaataaactgaaaatagcttatgaacatgtcatgagttgtttctataagctct |
8010448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 689 - 718
Target Start/End: Original strand, 13908360 - 13908389
Alignment:
| Q |
689 |
agtagataagttcaaataagtcaattcaaa |
718 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
13908360 |
agtagataagttcaaataagtcaattcaaa |
13908389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 599 - 672
Target Start/End: Original strand, 37273152 - 37273225
Alignment:
| Q |
599 |
gctatcattgagaacttatagaaataagatgaaaataacttattagtctgtcataagttgtttctataagctct |
672 |
Q |
| |
|
|||||| | |||||||||| |||||||| |||||| ||||||| |||||||||||||||| ||||||||| |
|
|
| T |
37273152 |
gctatcttggagaacttatggaaataagttgaaaacaacttatggacatgtcataagttgtttccataagctct |
37273225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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