View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4622-Insertion-10 (Length: 507)

Name: NF4622-Insertion-10
Description: NF4622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4622-Insertion-10
NF4622-Insertion-10
[»] chr3 (11 HSPs)
chr3 (7-507)||(51524880-51525377)
chr3 (400-507)||(29346811-29346918)
chr3 (399-507)||(16893090-16893198)
chr3 (439-507)||(35526600-35526668)
chr3 (182-281)||(29347075-29347174)
chr3 (176-284)||(35526300-35526407)
chr3 (169-232)||(18028321-18028384)
chr3 (398-480)||(8357463-8357545)
chr3 (441-507)||(31067188-31067255)
chr3 (176-237)||(3367240-3367301)
chr3 (165-230)||(21844687-21844752)
[»] chr2 (10 HSPs)
chr2 (171-507)||(18811473-18811812)
chr2 (400-496)||(31092340-31092436)
chr2 (399-480)||(18693141-18693222)
chr2 (399-480)||(14296257-14296338)
chr2 (176-284)||(31092563-31092671)
chr2 (176-257)||(30180093-30180174)
chr2 (399-507)||(8413816-8413924)
chr2 (402-476)||(37344663-37344737)
chr2 (176-232)||(13502883-13502939)
chr2 (167-281)||(37344844-37344957)
[»] chr8 (12 HSPs)
chr8 (176-506)||(27786551-27786893)
chr8 (270-401)||(13885821-13885964)
chr8 (165-292)||(29369342-29369469)
chr8 (165-284)||(399497-399616)
chr8 (400-507)||(29369116-29369223)
chr8 (182-284)||(36206250-36206351)
chr8 (413-496)||(36206433-36206516)
chr8 (441-494)||(8831263-8831316)
chr8 (176-326)||(3801196-3801347)
chr8 (176-225)||(14295242-14295291)
chr8 (177-228)||(3072279-3072330)
chr8 (165-228)||(8831003-8831066)
[»] chr5 (14 HSPs)
chr5 (165-507)||(36868305-36868659)
chr5 (400-507)||(19215395-19215502)
chr5 (399-486)||(32278705-32278792)
chr5 (399-507)||(788274-788382)
chr5 (176-318)||(19215620-19215763)
chr5 (176-281)||(32278448-32278552)
chr5 (401-473)||(36150646-36150718)
chr5 (443-494)||(15188089-15188140)
chr5 (177-283)||(1442695-1442800)
chr5 (163-284)||(20817439-20817558)
chr5 (165-202)||(7224592-7224629)
chr5 (182-232)||(15188267-15188317)
chr5 (176-257)||(788019-788100)
chr5 (189-280)||(37306954-37307043)
[»] chr1 (14 HSPs)
chr1 (165-507)||(41034773-41035132)
chr1 (400-507)||(13061962-13062069)
chr1 (399-480)||(49491879-49491960)
chr1 (398-476)||(3374347-3374425)
chr1 (205-283)||(44163527-44163605)
chr1 (182-273)||(39332585-39332676)
chr1 (176-283)||(19393905-19394010)
chr1 (398-478)||(39332376-39332456)
chr1 (443-507)||(50903525-50903589)
chr1 (399-494)||(17114714-17114808)
chr1 (439-494)||(19394166-19394221)
chr1 (167-228)||(3374577-3374637)
chr1 (165-282)||(9094295-9094410)
chr1 (176-283)||(14344329-14344434)
[»] chr6 (11 HSPs)
chr6 (205-351)||(29473426-29473576)
chr6 (399-494)||(25167869-25167964)
chr6 (399-494)||(10990050-10990145)
chr6 (399-476)||(4263368-4263445)
chr6 (165-283)||(3949611-3949728)
chr6 (191-257)||(5605422-5605488)
chr6 (165-283)||(25168119-25168237)
chr6 (402-503)||(3949351-3949452)
chr6 (176-283)||(2606608-2606714)
chr6 (399-477)||(5605651-5605729)
chr6 (164-232)||(13535385-13535452)
[»] chr4 (10 HSPs)
chr4 (401-507)||(24239844-24239950)
chr4 (175-292)||(7492265-7492382)
chr4 (399-476)||(37050045-37050122)
chr4 (176-292)||(7500316-7500432)
chr4 (441-507)||(16593810-16593876)
chr4 (441-507)||(19852497-19852563)
chr4 (177-283)||(37050277-37050382)
chr4 (399-507)||(16832139-16832247)
chr4 (176-232)||(18522037-18522093)
chr4 (182-232)||(19852784-19852833)
[»] chr7 (7 HSPs)
chr7 (402-507)||(19407845-19407950)
chr7 (164-281)||(7543832-7543949)
chr7 (176-257)||(19407632-19407713)
chr7 (205-346)||(26180301-26180443)
chr7 (399-507)||(26449535-26449643)
chr7 (176-333)||(29132186-29132344)
chr7 (172-283)||(34548156-34548266)
[»] scaffold0531 (2 HSPs)
scaffold0531 (399-507)||(10272-10380)
scaffold0531 (182-232)||(10559-10608)


Alignment Details
Target: chr3 (Bit Score: 420; Significance: 0; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 7 - 507
Target Start/End: Complemental strand, 51525377 - 51524880
Alignment:
Q  7 attaccgtgctcttgatttcactatcaattgaaatttaaataagactttgacacactcttatatcaggtaaaaaattgagttttaccaaatttacatgaa 106  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  51525377 attaccgtgctcttggtttcactatcaattgaaatttaaataagactttgacacactcttatatcaggtaaaaaattgagttttaccaaatttacgtgaa 51525278  T
Q  107 gtctacgtaatttgaacgtctagtccttttagcagggcaaacattggccatgaaagtattttttatttatttattaaagcactaaaatataaaagaccgg 206  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||     |||||||||||||||||||||||||||| ||    
T  51525277 gtctacgtaatttgaacgtctagtccttttagcggggcaaacattggccatgaaagtatttttt-----tttattaaagcactaaaatataaaagacagg 51525183  T
Q  207 agaggcctgagccaatacaacagagttacaatgtgtaaaatctatgaaaagtaaatccagatctatcccaagaaaggagaagacctgaggaaaaggagtc 306  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||    
T  51525182 agaggcctgagccaatacaacagagttacaatgtgtaaaacctatgaaaagtaaatccggatctatcccaagaaaggagaagacctgaggaaaatgagtc 51525083  T
Q  307 aaagaccaccatagtacatagaaactaacaactgctacaaaactaca--ctctatgaaaaagggttgatctacgaagttatattgttgccttcaaaccaa 404  Q
    |||||||||||||||||| ||||||||||||||||| ||||||||||  ||||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  51525082 aaagaccaccatagtacagagaaactaacaactgctgcaaaactacactctctatgaaaaagtgttgatctgcgaagttatattgttgccttcaaaccaa 51524983  T
Q  405 ctattctgtatctgtcaaggtagctttggaggagcccttttgggcacgggtcctcattccggctgagttaaagctataaggcctcactttatgcacctgc 504  Q
    ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51524982 ctattttgcatctgtcaaggtagctttggaggagcccttttgggcacgggtcctcattccggctgagttaaagctataaggcctcactttatgcacctgc 51524883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 400 - 507
Target Start/End: Complemental strand, 29346918 - 29346811
Alignment:
Q  400 accaactattctgtatctgtcaaggtagctttggaggagcccttttgggcacgggtcctcattccggctgagttaaagctataaggcctcactttatgca 499  Q
    |||||||||| ||||||||||||||  ||||||||||  | |||||| ||||||||||||||||||||| ||||||||||||||||| |||| || | ||    
T  29346918 accaactattatgtatctgtcaaggcggctttggaggtactcttttgtgcacgggtcctcattccggctaagttaaagctataaggcatcacgttgttca 29346819  T
Q  500 cctgcttc 507  Q
    ||||||||    
T  29346818 cctgcttc 29346811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 399 - 507
Target Start/End: Complemental strand, 16893198 - 16893090
Alignment:
Q  399 aaccaactattctgtatctgtcaaggtagctttggaggagcccttttgggcacgggtcctcattccggctgagttaaagctataaggcctcactttatgc 498  Q
    |||||||||||| |||| || ||||| |||||||||||  |||||||| |||||||||||||||||||||||||| || |||  |||| ||||||| | |    
T  16893198 aaccaactattcggtatatggcaaggcagctttggaggcacccttttgagcacgggtcctcattccggctgagttgaacctagtaggcttcactttgttc 16893099  T
Q  499 acctgcttc 507  Q
    |||||||||    
T  16893098 acctgcttc 16893090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 439 - 507
Target Start/End: Original strand, 35526600 - 35526668
Alignment:
Q  439 cccttttgggcacgggtcctcattccggctgagttaaagctataaggcctcactttatgcacctgcttc 507  Q
    ||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||| | ||||||||||    
T  35526600 cccttttgggcacgggtcctcattccggccgagttaaagctagaaggcatcactttgttcacctgcttc 35526668  T

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Target: chr3; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 182 - 281
Target Start/End: Complemental strand, 29347174 - 29347075
Alignment:
Q  182 aaagcactaaaatataaaagaccggagaggcctgagccaatacaacagagttacaatgtgtaaaatctatgaaaagtaaatccagatctatcccaagaaa 281  Q
    |||||| ||||||||||||||| |||||||||||| |||||||||||||| ||||  | |||||| ||||||||||  || || | ||||||||||||||    
T  29347174 aaagcaataaaatataaaagacaggagaggcctgaaccaatacaacagagatacatagagtaaaacctatgaaaagagaaaccgggtctatcccaagaaa 29347075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 176 - 284
Target Start/End: Original strand, 35526300 - 35526407
Alignment:
Q  176 tttattaaagcactaaaatataaaagaccggagaggcctgagccaatacaacagagttacaatgtgtaaaatctatgaaaagtaaatccagatctatccc 275  Q
    ||||| |||||| ||||||||||||||| | |||||||||| ||||||||| |||| ||||  | ||||||  |||||||||  || ||||| |||| ||    
T  35526300 tttatcaaagcaataaaatataaaagacag-agaggcctgaaccaatacaatagagatacatagagtaaaacttatgaaaagagaaaccagagctattcc 35526398  T
Q  276 aagaaagga 284  Q
    |||||||||    
T  35526399 aagaaagga 35526407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 169 - 232
Target Start/End: Original strand, 18028321 - 18028384
Alignment:
Q  169 ttatttatttattaaagcactaaaatataaaagaccggagaggcctgagccaatacaacagagt 232  Q
    |||||| ||||| |||||||||||||||||||||   |||| |||||| |||||||||||||||    
T  18028321 ttatttttttatcaaagcactaaaatataaaagatatgagatgcctgaaccaatacaacagagt 18028384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 398 - 480
Target Start/End: Original strand, 8357463 - 8357545
Alignment:
Q  398 aaaccaactattctgtatctgtcaaggtagctttggaggagcccttttgggcacgggtcctcattccggctgagttaaagcta 480  Q
    ||||||||||||  |||||||||||| || ||||| || | | ||||||| |||| |||||||||  ||||||||||||||||    
T  8357463 aaaccaactatttcgtatctgtcaagataactttgaagaaactcttttggacacgagtcctcattttggctgagttaaagcta 8357545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 441 - 507
Target Start/End: Complemental strand, 31067255 - 31067188
Alignment:
Q  441 cttttgggcacgggtcctcattccgg-ctgagttaaagctataaggcctcactttatgcacctgcttc 507  Q
    ||||| |||||||||||||||||| | ||||||||||||||  | |||||||||| ||||| ||||||    
T  31067255 cttttaggcacgggtcctcattcccgactgagttaaagctagcaagcctcactttgtgcacatgcttc 31067188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 237
Target Start/End: Original strand, 3367240 - 3367301
Alignment:
Q  176 tttattaaagcactaaaatataaaagaccggagaggcctgagccaatacaacagagttacaa 237  Q
    ||||| ||||||||||||||||||| || ||||| || |||  |||||||||||||| ||||    
T  3367240 tttatcaaagcactaaaatataaaaaacaggagatgcatgaatcaatacaacagagtcacaa 3367301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 230
Target Start/End: Original strand, 21844687 - 21844752
Alignment:
Q  165 ttttttatttatttattaaagcactaaaatataaaagaccggagaggcctgagccaatacaacaga 230  Q
    |||||| ||| ||||| ||| |||||||||||||||||| ||||| | |||| | |||||||||||    
T  21844687 ttttttttttttttatcaaaacactaaaatataaaagacaggagatgtctgaactaatacaacaga 21844752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 253; Significance: 1e-140; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 171 - 507
Target Start/End: Original strand, 18811473 - 18811812
Alignment:
Q  171 atttatttattaaagcactaaaatataaaagaccggagaggcctgagccaatacaacagagttacaatgtgtaaaatctatgaaaagtaaatccagatct 270  Q
    |||| ||||| |||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||| | |||||    
T  18811473 atttttttatcaaagcactaaaatataaaagacaggagaggcctgaaccaatacaacagagttacaatatgtaaaacctatgaaaagtaaattcggatct 18811572  T
Q  271 atcccaagaaaggagaagacctgaggaaaaggagtcaaagaccaccatagtacatagaaactaacaactgctacaaaactaca--ctctatg-aaaaagg 367  Q
    ||||||||||||||||||||||  |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||  ||||||| ||||||     
T  18811573 atcccaagaaaggagaagacctatggaaaaggtgtcaaagaccaccatagtacagagaaactaacaactgctacaaaactacactctctatgaaaaaagt 18811672  T
Q  368 gttgatctacgaagttatattgttgccttcaaaccaactattctgtatctgtcaaggtagctttggaggagcccttttgggcacgggtcctcattccggc 467  Q
    ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18811673 gttgatctacgcagttatactgttgccttcaaaccaactattctgtatctgtcaaggtagctttggaggagcccttttgggcacgggtcctcattccggc 18811772  T
Q  468 tgagttaaagctataaggcctcactttatgcacctgcttc 507  Q
    |||||||||||||||| || ||||||||||||||||||||    
T  18811773 tgagttaaagctataaagcttcactttatgcacctgcttc 18811812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 400 - 496
Target Start/End: Complemental strand, 31092436 - 31092340
Alignment:
Q  400 accaactattctgtatctgtcaaggtagctttggaggagcccttttgggcacgggtcctcattccggctgagttaaagctataaggcctcactttat 496  Q
    ||||||||||||||||||| ||||    |||||||||  |||||||||||||| ||||||||||||||||||||||| ||| ||||| |||||||||    
T  31092436 accaactattctgtatctggcaagacgactttggaggtacccttttgggcacgagtcctcattccggctgagttaaatctagaaggcatcactttat 31092340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 399 - 480
Target Start/End: Complemental strand, 18693222 - 18693141
Alignment:
Q  399 aaccaactattctgtatctgtcaaggtagctttggaggagcccttttgggcacgggtcctcattccggctgagttaaagcta 480  Q
    ||||||||||| |||||||||||||  | |||||||||| ||||||| ||||| |||||||||||||||| |||||||||||    
T  18693222 aaccaactattttgtatctgtcaagacaactttggaggaacccttttaggcacaggtcctcattccggcttagttaaagcta 18693141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 399 - 480
Target Start/End: Original strand, 14296257 - 14296338
Alignment:
Q  399 aaccaactattctgtatctgtcaaggtagctttggaggagcccttttgggcacgggtcctcattccggctgagttaaagcta 480  Q
    ||||||||||| |||||||| ||||| | |||||||||  ||||||||| |||| || ||||||||||||||||||||||||    
T  14296257 aaccaactattatgtatctgccaaggcatctttggaggtacccttttggacacgagtgctcattccggctgagttaaagcta 14296338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 176 - 284
Target Start/End: Complemental strand, 31092671 - 31092563
Alignment:
Q  176 tttattaaagcactaaaatataaaagaccggagaggcctgagccaatacaacagagttacaatgtgtaaaatctatgaaaagtaaatccagatctatccc 275  Q
    ||||| |||||| ||||||||||||||| |||||| ||||| ||||||||||| |  ||||  | |||||| ||||||||||  |||| ||||| |||||    
T  31092671 tttatcaaagcaataaaatataaaagacgggagagacctgaaccaatacaacaaatatacatagagtaaaacctatgaaaagagaatctagatcaatccc 31092572  T
Q  276 aagaaagga 284  Q
    |||||||||    
T  31092571 aagaaagga 31092563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 176 - 257
Target Start/End: Complemental strand, 30180174 - 30180093
Alignment:
Q  176 tttattaaagcactaaaatataaaagaccggagaggcctgagccaatacaacagagttacaatgtgtaaaatctatgaaaag 257  Q
    ||||| |||||| ||||||||||| |||  |||||||||||  ||||||| |||||| |||| |||||||||||||||||||    
T  30180174 tttatcaaagcaataaaatataaacgacgagagaggcctgaatcaatacaccagagtcacaaagtgtaaaatctatgaaaag 30180093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 399 - 507
Target Start/End: Original strand, 8413816 - 8413924
Alignment:
Q  399 aaccaactattctgtatctgtcaaggtagctttggaggagcccttttgggcacgggtcctcattccggctgagttaaagctataaggcctcactttatgc 498  Q
    |||||||||||| |||| || || |  |||||||||||  |||||||| ||||||||||||||||||| |||||| ||||||  |||| ||||||| | |    
T  8413816 aaccaactattcagtatatggcaggacagctttggaggtacccttttgagcacgggtcctcattccggttgagttgaagctagtaggcttcactttgttc 8413915  T
Q  499 acctgcttc 507  Q
     ||||||||    
T  8413916 gcctgcttc 8413924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 402 - 476
Target Start/End: Complemental strand, 37344737 - 37344663
Alignment:
Q  402 caactattctgtatctgtcaaggtagctttggaggagcccttttgggcacgggtcctcattccggctgagttaaa 476  Q
    |||||||| ||||| ||||||||  |||||||||   ||||||||||||||  ||||||||||||||||||||||    
T  37344737 caactattatgtatatgtcaaggcggctttggagatacccttttgggcacgaatcctcattccggctgagttaaa 37344663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 176 - 232
Target Start/End: Complemental strand, 13502939 - 13502883
Alignment:
Q  176 tttattaaagcactaaaatataaaagaccggagaggcctgagccaatacaacagagt 232  Q
    ||||| |||||||||||||||||||||| ||||| || |||  ||||||||||||||    
T  13502939 tttatcaaagcactaaaatataaaagacaggagatgcatgaatcaatacaacagagt 13502883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 167 - 281
Target Start/End: Complemental strand, 37344957 - 37344844
Alignment:
Q  167 ttttatttatttattaaagcactaaaatataaaagaccggagaggcctgagccaatacaacagagttacaatgtgtaaaatctatgaaaagtaaatccag 266  Q
    |||| ||| ||||| |||||| ||||||||||||| | |||||||  ||| |||||||| |||||| |||  |||||||| ||| ||||||  ||  | |    
T  37344957 ttttttttttttatcaaagcaataaaatataaaag-caggagaggtttgaaccaatacatcagagtcacatagtgtaaaacctacgaaaagagaaatcgg 37344859  T
Q  267 atctatcccaagaaa 281  Q
    |||||||||||||||    
T  37344858 atctatcccaagaaa 37344844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 149; Significance: 2e-78; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 176 - 506
Target Start/End: Original strand, 27786551 - 27786893
Alignment:
Q  176 tttattaaagcactaaaatataaaagaccggagaggcctgagccaatacaacagagttacaatgtgtaaaatctatgaaaagtaaatccagatctatccc 275  Q
    ||||| ||||||||||||||||||| || |||||||||||| ||||||||||| ||| ||||||||||| | |||||||||| |||  | ||||||||||    
T  27786551 tttatcaaagcactaaaatataaaatacaggagaggcctgaaccaatacaacaaagtcacaatgtgtaagacctatgaaaagaaaagtcggatctatccc 27786650  T
Q  276 aagaaaggagaagacctgaggaaaaggagtcaaagaccaccatagtacatagaaactaacaactgctacaaaactacac--tctatgaa----------a 363  Q
    ||||||||| ||||||| ||||||||| |||| | |||||||||||||| |||||||||| ||| |||||||||||| |  ||||||||          |    
T  27786651 aagaaaggaaaagacctaaggaaaaggtgtcacacaccaccatagtacagagaaactaaccactactacaaaactaccctttctatgaaaatttgaacca 27786750  T
Q  364 aagggttgatctacgaagttatattgttgccttcaaaccaactattctgtatctgtcaaggtagctttggaggagcccttttgggcacgggtcctcattc 463  Q
    ||| | ||||||||| |||||||  ||| ||||  ||||||||||| ||||||||||||||||||||||||||| || |||||||||||| |||||||||    
T  27786751 aagtgatgatctacgcagttataccgtttcctttgaaccaactattttgtatctgtcaaggtagctttggaggaaccattttgggcacggctcctcattc 27786850  T
Q  464 cggctgagttaaagctataaggcctcactttatgcacctgctt 506  Q
    ||||||||||||||||| ||||| ||||||||| || ||||||    
T  27786851 cggctgagttaaagctagaaggcttcactttattcatctgctt 27786893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 270 - 401
Target Start/End: Original strand, 13885821 - 13885964
Alignment:
Q  270 tatcccaagaaaggagaagacctgaggaaaaggagtcaaagaccaccatagtacatagaaactaacaactgctacaaaac--tacactctatga------ 361  Q
    ||||||||||||||||||||||| || |||||| ||||||||||||||||||||| ||||||||||||||| ||||||||  ||| ||||||||          
T  13885821 tatcccaagaaaggagaagacctaagaaaaaggtgtcaaagaccaccatagtacagagaaactaacaactgttacaaaactatactctctatgacaattt 13885920  T
Q  362 ----aaaagggttgatctacgaagttatattgttgccttcaaac 401  Q
        ||||| ||||||||||| ||||||||||||||||||||||    
T  13885921 gaacaaaagtgttgatctacgcagttatattgttgccttcaaac 13885964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 165 - 292
Target Start/End: Complemental strand, 29369469 - 29369342
Alignment:
Q  165 ttttttatttatttattaaagcactaaaatataaaagaccggagaggcctgagccaatacaacagagttacaatgtgtaaaatctatgaaaagtaaatcc 264  Q
    |||||| ||| ||||| |||||| ||||||||||||||| |||||||||||  |||||||||||||| ||||  | |||||| ||||||||||  |||||    
T  29369469 ttttttttttttttatcaaagcaataaaatataaaagacaggagaggcctggaccaatacaacagagatacatagagtaaaacctatgaaaagagaatcc 29369370  T
Q  265 agatctatcccaagaaaggagaagacct 292  Q
     |||| |||||||||||||| |||||||    
T  29369369 ggatcaatcccaagaaaggaaaagacct 29369342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 165 - 284
Target Start/End: Original strand, 399497 - 399616
Alignment:
Q  165 ttttttatttatttattaaagcactaaaatataaaagaccggagaggcctgagccaatacaacagagttacaatgtgtaaaatctatgaaaagtaaatcc 264  Q
    |||||| ||| ||||| ||| |||||||||||||||||| ||||| |||||| |||||||||||||||||||| ||| | |||   ||||||| ||||||    
T  399497 ttttttttttttttatcaaatcactaaaatataaaagacaggagatgcctgaaccaatacaacagagttacaaggtgaataatacgtgaaaagaaaatcc 399596  T
Q  265 agatctatcccaagaaagga 284  Q
    ||||||||||| | ||||||    
T  399597 agatctatccctataaagga 399616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 400 - 507
Target Start/End: Complemental strand, 29369223 - 29369116
Alignment:
Q  400 accaactattctgtatctgtcaaggtagctttggaggagcccttttgggcacgggtcctcattccggctgagttaaagctataaggcctcactttatgca 499  Q
    ||||||||||||||||||| |||||  | |||||| |   |||||||||||||||||||||||| |||| ||||||||||  ||||| ||||||||| ||    
T  29369223 accaactattctgtatctgccaaggcggatttggatgtatccttttgggcacgggtcctcattctggctcagttaaagcttgaaggcatcactttattca 29369124  T
Q  500 cctgcttc 507  Q
    | ||||||    
T  29369123 cgtgcttc 29369116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 182 - 284
Target Start/End: Original strand, 36206250 - 36206351
Alignment:
Q  182 aaagcactaaaatataaaagaccggagaggcctgagccaatacaacagagttacaatgtgtaaaatctatgaaaagtaaatccagatctatcccaagaaa 281  Q
    |||||||||||||||||||||| ||||||||||||  ||||||| |||| ||| ||||| |||||| |  |||||| ||| || ||||||||||||||||    
T  36206250 aaagcactaaaatataaaagacaggagaggcctgaatcaatacatcagatttaaaatgtataaaatttgggaaaag-aaaaccggatctatcccaagaaa 36206348  T
Q  282 gga 284  Q
    |||    
T  36206349 gga 36206351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 413 - 496
Target Start/End: Original strand, 36206433 - 36206516
Alignment:
Q  413 tatctgtcaaggtagctttggaggagcccttttgggcacgggtcctcattccggctgagttaaagctataaggcctcactttat 496  Q
    |||||||||||| | |||||||||| | ||||| |||||| |||||||||||| || ||||||||||| ||||| |||||||||    
T  36206433 tatctgtcaaggcaactttggaggaactcttttaggcacgagtcctcattccgactaagttaaagctagaaggcttcactttat 36206516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 441 - 494
Target Start/End: Original strand, 8831263 - 8831316
Alignment:
Q  441 cttttgggcacgggtcctcattccggctgagttaaagctataaggcctcacttt 494  Q
    |||||| |||||||||||||||||||||||||||||||||  ||||||||||||    
T  8831263 cttttgagcacgggtcctcattccggctgagttaaagctagcaggcctcacttt 8831316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 176 - 326
Target Start/End: Complemental strand, 3801347 - 3801196
Alignment:
Q  176 tttattaaagcactaaaatataaaagaccggagaggcctgagccaatacaacagagttacaatgtgtaaaatctatgaaaagtaaatccagatctatccc 275  Q
    ||||| |||| | ||||||||||||||| ||||||| |||| |||||||| ||||| ||||  |  ||||| ||||||||||  || || |||||||||     
T  3801347 tttatcaaagtaataaaatataaaagacaggagaggtctgaaccaatacatcagagatacatggaataaaacctatgaaaagagaaaccggatctatcct 3801248  T
Q  276 aagaaaggagaagacctgaggaaa-aggagtcaaagaccaccatagtacata 326  Q
    ||||||||  | ||||| |||||| ||| ||||||||| ||| || ||||||    
T  3801247 aagaaaggcaaggacctaaggaaagaggtgtcaaagacaaccgtattacata 3801196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 176 - 225
Target Start/End: Original strand, 14295242 - 14295291
Alignment:
Q  176 tttattaaagcactaaaatataaaagaccggagaggcctgagccaataca 225  Q
    ||||| |||||||||||||||||||||| |||||||||||| ||||||||    
T  14295242 tttatcaaagcactaaaatataaaagacaggagaggcctgaaccaataca 14295291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 177 - 228
Target Start/End: Original strand, 3072279 - 3072330
Alignment:
Q  177 ttattaaagcactaaaatataaaagaccggagaggcctgagccaatacaaca 228  Q
    |||| |||||||||||||||||||||| ||||| |||||| |||||||||||    
T  3072279 ttatcaaagcactaaaatataaaagacaggagatgcctgaaccaatacaaca 3072330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 165 - 228
Target Start/End: Original strand, 8831003 - 8831066
Alignment:
Q  165 ttttttatttatttattaaagcactaaaatataaaagaccggagaggcctgagccaatacaaca 228  Q
    |||||| ||| ||||| |||||||||||||||||||||| ||||| | |||| |||||||||||    
T  8831003 ttttttttttttttatcaaagcactaaaatataaaagacaggagatgtctgaaccaatacaaca 8831066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 145; Significance: 4e-76; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 165 - 507
Target Start/End: Complemental strand, 36868659 - 36868305
Alignment:
Q  165 ttttttatttatttattaaagcactaaaatataaaagaccggagaggcctgagccaatacaacagagttacaatgtgtaaaatctatgaaaagtaaatcc 264  Q
    |||||| ||| ||||| ||| |||||||||||||||||  |||||||||||| ||||||||||| ||| ||||||||||| | |||||||||| |||  |    
T  36868659 ttttttttttttttatcaaaacactaaaatataaaagataggagaggcctgaaccaatacaacacagtcacaatgtgtaagacctatgaaaagaaaaatc 36868560  T
Q  265 agatctatcccaagaaaggagaagacctgaggaaaaggagtcaaagaccaccatagtacatagaaactaacaactgctacaaaactacactct--atgaa 362  Q
     ||||||||||||||||||| ||||||| || |||||| ||||||||||||||| | ||| |||||| | | ||| |||||||||||| ||||  |||||    
T  36868559 ggatctatcccaagaaaggaaaagacctaagaaaaaggtgtcaaagaccaccatggaacacagaaaccacccactactacaaaactaccctctctatgaa 36868460  T
Q  363 aa----------agggttgatctacgaagttatattgttgccttcaaaccaactattctgtatctgtcaaggtagctttggaggagcccttttgggcacg 452  Q
    ||          |  ||||||||||| ||||||| |||||||||  ||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||    
T  36868459 aatttgaaccaaaatgttgatctacgcagttatactgttgcctttgaaccaactattatgtatctgtcaaggtagctttggaggaacccttttggacacg 36868360  T
Q  453 ggtcctcattccggctgagttaaagctataaggcctcactttatgcacctgcttc 507  Q
    || ||||||||||||||||||||||||| ||||| ||||||||| ||| ||||||    
T  36868359 ggccctcattccggctgagttaaagctagaaggcttcactttattcacttgcttc 36868305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 400 - 507
Target Start/End: Complemental strand, 19215502 - 19215395
Alignment:
Q  400 accaactattctgtatctgtcaaggtagctttggaggagcccttttgggcacgggtcctcattccggctgagttaaagctataaggcctcactttatgca 499  Q
    ||||||||||||||||||| ||||| || |||| |||  ||||||||||| ||||||||||||| |||||||||||||||| | ||| ||||||| | ||    
T  19215502 accaactattctgtatctgccaaggcagttttgaaggtacccttttgggctcgggtcctcattcgggctgagttaaagctagacggcatcactttgttca 19215403  T
Q  500 cctgcttc 507  Q
    ||||||||    
T  19215402 cctgcttc 19215395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 399 - 486
Target Start/End: Original strand, 32278705 - 32278792
Alignment:
Q  399 aaccaactattctgtatctgtcaaggtagctttggaggagcccttttgggcacgggtcctcattccggctgagttaaagctataaggc 486  Q
    |||| |||||||||||||||||||||  ||||||||||  |||||||||| |||  || ||||||||||||||||||| ||| |||||    
T  32278705 aacccactattctgtatctgtcaaggcggctttggaggtacccttttgggaacgaatcttcattccggctgagttaaaactagaaggc 32278792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 399 - 507
Target Start/End: Original strand, 788274 - 788382
Alignment:
Q  399 aaccaactattctgtatctgtcaaggtagctttggaggagcccttttgggcacgggtcctcattccggctgagttaaagctataaggcctcactttatgc 498  Q
    |||||| |||||| ||| ||||||||  ||||||||||| |||||||||||||| ||||||||  || ||||||||||| || ||||| ||| ||| | |    
T  788274 aaccaattattctatatatgtcaaggcggctttggaggaacccttttgggcacgagtcctcatagcgtctgagttaaagttagaaggcttcattttgttc 788373  T
Q  499 acctgcttc 507  Q
    | |||||||    
T  788374 atctgcttc 788382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 176 - 318
Target Start/End: Complemental strand, 19215763 - 19215620
Alignment:
Q  176 tttattaaagcactaaaatataaaagaccggagaggcctgagccaatacaacagagttacaatgtgtaaaatctatgaaaagtaaatccagatctatccc 275  Q
    ||||| |||| | ||||||||||||||  |||||||||||| |||||||||||||| | ||  |  ||||| ||||||||||  || | |||||||| ||    
T  19215763 tttatcaaagtaataaaatataaaagataggagaggcctgaaccaatacaacagagatgcatagactaaaacctatgaaaagagaaactagatctattcc 19215664  T
Q  276 aagaaaggagaagacctgaggaaa-aggagtcaaagaccaccat 318  Q
    ||||||||| | ||||| | |||| ||| ||||||||| |||||    
T  19215663 aagaaaggaaaggacctaatgaaataggtgtcaaagacaaccat 19215620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 176 - 281
Target Start/End: Original strand, 32278448 - 32278552
Alignment:
Q  176 tttattaaagcactaaaatataaaagaccggagaggcctgagccaatacaacagagttacaatgtgtaaaatctatgaaaagtaaatccagatctatccc 275  Q
    ||||| || ||| ||||||||||||| | | |||||||||| |||||||| |||||| |||  |||||||| ||||||||||  || || ||||||||||    
T  32278448 tttatcaaggcaataaaatataaaag-cagaagaggcctgaaccaatacatcagagtcacatagtgtaaaacctatgaaaagagaaaccggatctatccc 32278546  T
Q  276 aagaaa 281  Q
    ||||||    
T  32278547 aagaaa 32278552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 401 - 473
Target Start/End: Original strand, 36150646 - 36150718
Alignment:
Q  401 ccaactattctgtatctgtcaaggtagctttggaggagcccttttgggcacgggtcctcattccggctgagtt 473  Q
    |||||||||  |||| || | |||||||||||||||   ||||||||||||| ||||||||||||||||||||    
T  36150646 ccaactatttggtatatgccgaggtagctttggaggtatccttttgggcacgagtcctcattccggctgagtt 36150718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 443 - 494
Target Start/End: Complemental strand, 15188140 - 15188089
Alignment:
Q  443 tttgggcacgggtcctcattccggctgagttaaagctataaggcctcacttt 494  Q
    |||||||||||||||||||||  |||||||||||||||| |||| |||||||    
T  15188140 tttgggcacgggtcctcattctagctgagttaaagctatcaggcttcacttt 15188089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 177 - 283
Target Start/End: Original strand, 1442695 - 1442800
Alignment:
Q  177 ttattaaagcactaaaatataaaagaccggagaggcctgagccaatacaacagagttacaatgtgtaaaatctatgaaaagtaaatccagatctatccca 276  Q
    |||| |||||| ||||||||||||| | |||||||| ||| |||||||| |||||| |||   |||||||  || ||||||  || ||||||||||||||    
T  1442695 ttatcaaagcaataaaatataaaag-caggagaggcatgaaccaatacatcagagtcacatattgtaaaacataagaaaagagaaaccagatctatccca 1442793  T
Q  277 agaaagg 283  Q
    |||||||    
T  1442794 agaaagg 1442800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 163 - 284
Target Start/End: Original strand, 20817439 - 20817558
Alignment:
Q  163 tattttttatttatttattaaagcactaaaatataaaagaccggagaggcctgagccaatacaacagagttacaatgtgtaaaatctatgaaaagtaaat 262  Q
    |||||||| ||| ||||| |||||| |||||||  |||||  ||||||||||||  ||||||| |||| | | ||||| ||||| || ||||||| |||     
T  20817439 tattttttttttttttatcaaagcattaaaata--aaagataggagaggcctgattcaatacatcagattcaaaatgtataaaacctgtgaaaagaaaaa 20817536  T
Q  263 ccagatctatcccaagaaagga 284  Q
     ||||||||||| |||||||||    
T  20817537 tcagatctatcctaagaaagga 20817558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 165 - 202
Target Start/End: Complemental strand, 7224629 - 7224592
Alignment:
Q  165 ttttttatttatttattaaagcactaaaatataaaaga 202  Q
    |||||||||||||||||||| |||||||||||||||||    
T  7224629 ttttttatttatttattaaaacactaaaatataaaaga 7224592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 182 - 232
Target Start/End: Complemental strand, 15188317 - 15188267
Alignment:
Q  182 aaagcactaaaatataaaagaccggagaggcctgagccaatacaacagagt 232  Q
    ||||||||||||||||||||||  |||| |||||| | |||||||||||||    
T  15188317 aaagcactaaaatataaaagacaagagatgcctgaacgaatacaacagagt 15188267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 257
Target Start/End: Original strand, 788019 - 788100
Alignment:
Q  176 tttattaaagcactaaaatataaaagaccggagaggcctgagccaatacaacagagttacaatgtgtaaaatctatgaaaag 257  Q
    ||||| ||| || ||||||||||||||| ||||| |||||| |||||||||||  ||  ||  ||||||||||||| |||||    
T  788019 tttatcaaaacaataaaatataaaagacaggagaagcctgaaccaatacaacatggtcgcatagtgtaaaatctataaaaag 788100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 189 - 280
Target Start/End: Original strand, 37306954 - 37307043
Alignment:
Q  189 taaaatataaaagaccggagaggcctgagccaatacaacagagttacaatgtgtaaaatctatgaaaagtaaatccagatctatcccaagaa 280  Q
    |||||||||||||||  ||||  | ||| ||||||||||| ||| ||||  ||||||||||| |||||| |||  | |||||||||||||||    
T  37306954 taaaatataaaagacaagaga--cttgaaccaatacaacaaagtcacaaaatgtaaaatctacgaaaagaaaaatcggatctatcccaagaa 37307043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 140; Significance: 4e-73; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 165 - 507
Target Start/End: Original strand, 41034773 - 41035132
Alignment:
Q  165 ttttttatttatttattaaagcactaaaatataaaagaccggagaggcctgagccaatacaacagagttacaatgtgtaaaatctatgaaaagtaaatcc 264  Q
    |||||||||| ||||| |||||||||||||||||||||| ||||||| |||| |||||||| |||||| |||||||| |||| |||||||||| ||| ||    
T  41034773 ttttttattt-tttatcaaagcactaaaatataaaagacaggagaggtctgaaccaatacaccagagtcacaatgtgaaaaacctatgaaaagaaaaacc 41034871  T
Q  265 agatctatcccaagaaaggagaagacctgaggaaaaggagtcaaagaccaccatagtacatagaaactaacaactgctacaaaactacactct--atga- 361  Q
     |||||||| |||||||||| ||||||  ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||  ||||     
T  41034872 cgatctatcacaagaaaggaaaagacccaaggaaaaggtgtcaaagaccaccatagtacagagaaactaacaactgctacaaaactaccctctcgatgaa 41034971  T
Q  362 ---------aaaagggttgatctacgaagtt------atattgttgccttcaaaccaactattctgtatctgtcaaggtagctttggaggagcccttttg 446  Q
             ||||| |||||| |||| ||||      ||| | |||| ||| |||||||||||| | || || ||||||||||||||||||||| |||||    
T  41034972 aatttgaacaaaagtgttgatatacgcagttaaactaatactattgctttctaaccaactattcagaatttgccaaggtagctttggaggagcctttttg 41035071  T
Q  447 ggcacgggtcctcattccggctgagttaaagctataaggcctcactttatgcacctgcttc 507  Q
    |||||||||||||||||||||||||||||||||| ||||| |||   ||| ||||||||||    
T  41035072 ggcacgggtcctcattccggctgagttaaagctagaaggcttcaaaatattcacctgcttc 41035132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 400 - 507
Target Start/End: Original strand, 13061962 - 13062069
Alignment:
Q  400 accaactattctgtatctgtcaaggtagctttggaggagcccttttgggcacgggtcctcattccggctgagttaaagctataaggcctcactttatgca 499  Q
    ||||| |||||||||| ||||||||  ||||||||||  | |||||  ||||||||||||||| ||||||||||||||||| ||||| ||||||| | ||    
T  13061962 accaattattctgtatttgtcaaggcggctttggaggtactcttttcagcacgggtcctcatttcggctgagttaaagctaaaaggcatcactttgttca 13062061  T
Q  500 cctgcttc 507  Q
    ||||||||    
T  13062062 cctgcttc 13062069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 399 - 480
Target Start/End: Original strand, 49491879 - 49491960
Alignment:
Q  399 aaccaactattctgtatctgtcaaggtagctttggaggagcccttttgggcacgggtcctcattccggctgagttaaagcta 480  Q
    |||||||||||| ||||  | ||||| | |||||||||  ||||||||||||||||||||||||||||||||||| ||||||    
T  49491879 aaccaactattcggtatacgccaaggcaactttggaggtacccttttgggcacgggtcctcattccggctgagttgaagcta 49491960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 398 - 476
Target Start/End: Complemental strand, 3374425 - 3374347
Alignment:
Q  398 aaaccaactattctgtatctgtcaaggtagctttggaggagcccttttgggcacgggtcctcattccggctgagttaaa 476  Q
    ||||||||||||||||| ||  ||||| ||||||||||   |||||||||||||  |||||||||||||||||||||||    
T  3374425 aaaccaactattctgtagcttccaaggcagctttggagctacccttttgggcacatgtcctcattccggctgagttaaa 3374347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 205 - 283
Target Start/End: Original strand, 44163527 - 44163605
Alignment:
Q  205 ggagaggcctgagccaatacaacagagttacaatgtgtaaaatctatgaaaagtaaatccagatctatcccaagaaagg 283  Q
    |||||||||||| ||||||||||||||| |||  |||||||| ||||||||||  || || ||||||||||||||||||    
T  44163527 ggagaggcctgaaccaatacaacagagtcacatagtgtaaaacctatgaaaagagaaaccggatctatcccaagaaagg 44163605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 182 - 273
Target Start/End: Complemental strand, 39332676 - 39332585
Alignment:
Q  182 aaagcactaaaatataaaagaccggagaggcctgagccaatacaacagagttacaatgtgtaaaatctatgaaaagtaaatccagatctatc 273  Q
    |||||||||||||||||||||| ||||| ||||||  |||||||||||||| | |  ||| | ||  ||||||||| |||||||||||||||    
T  39332676 aaagcactaaaatataaaagacaggagatgcctgaatcaatacaacagagtcatatagtggataacttatgaaaagaaaatccagatctatc 39332585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 176 - 283
Target Start/End: Original strand, 19393905 - 19394010
Alignment:
Q  176 tttattaaagcactaaaatataaaagaccggagaggcctgagccaatacaacagagttacaatgtgtaaaatctatgaaaagtaaatccagatctatccc 275  Q
    ||||| |||||||||||||||||||||| ||||| | |||| ||||||||  ||||| ||| |||| | || ||||| ||||  |||| |||||||||||    
T  19393905 tttatcaaagcactaaaatataaaagacaggagatgtctgaaccaataca--agagtcacattgtggagaacctatggaaagagaatctagatctatccc 19394002  T
Q  276 aagaaagg 283  Q
     |||||||    
T  19394003 tagaaagg 19394010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 398 - 478
Target Start/End: Complemental strand, 39332456 - 39332376
Alignment:
Q  398 aaaccaactattctgtatctgtcaaggtagctttggaggagcccttttgggcacgggtcctcattccggctgagttaaagc 478  Q
    ||||||| ||||||||| ||| ||||  |  |||| |||  |||||||||||||||||||||||| |||||||||||||||    
T  39332456 aaaccaattattctgtagctgccaagtcatttttgaaggtacccttttgggcacgggtcctcatttcggctgagttaaagc 39332376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 443 - 507
Target Start/End: Original strand, 50903525 - 50903589
Alignment:
Q  443 tttgggcacgggtcctcattccggctgagttaaagctataaggcctcactttatgcacctgcttc 507  Q
    |||||||||||||||||||| |||||||||| ||||||  |||| ||||||| | ||||||||||    
T  50903525 tttgggcacgggtcctcatttcggctgagttgaagctagtaggcttcactttgttcacctgcttc 50903589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 399 - 494
Target Start/End: Original strand, 17114714 - 17114808
Alignment:
Q  399 aaccaactattctgtatctgtcaaggtagctttggaggagcccttttgggcacgggtcctcattccggctgagttaaagctataaggcctcacttt 494  Q
    ||||||||||||| || ||| |||||  ||||||||||  ||||||||| || |||||||||||| ||| ||||||||||||  |||| |||||||    
T  17114714 aaccaactattctatagctg-caaggccgctttggaggtacccttttggacatgggtcctcattctggcagagttaaagctagcaggcttcacttt 17114808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 439 - 494
Target Start/End: Original strand, 19394166 - 19394221
Alignment:
Q  439 cccttttgggcacgggtcctcattccggctgagttaaagctataaggcctcacttt 494  Q
    |||||||||||||||||||||||||| ||| ||||||||| | ||||| |||||||    
T  19394166 cccttttgggcacgggtcctcattccagctaagttaaagcaagaaggcttcacttt 19394221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 167 - 228
Target Start/End: Complemental strand, 3374637 - 3374577
Alignment:
Q  167 ttttatttatttattaaagcactaaaatataaaagaccggagaggcctgagccaatacaaca 228  Q
    |||||||| ||||| ||||||||||||||||||||||   ||| |||||| |||||||||||    
T  3374637 ttttattt-tttatcaaagcactaaaatataaaagacataagatgcctgaaccaatacaaca 3374577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 282
Target Start/End: Original strand, 9094295 - 9094410
Alignment:
Q  165 ttttttatttatttattaaagcactaaaatataaaagaccggagaggcctgagccaatacaacagagttacaatgtgtaaaatctatgaaaagtaaatcc 264  Q
    |||||||||| ||||| |||||| |||||||||||||   |||||||| | | || ||||| ||||||||||  |||||||| ||||||||||  ||       
T  9094295 ttttttattt-tttataaaagcaataaaatataaaag-taggagaggcttaaacccatacatcagagttacatagtgtaaaacctatgaaaagagaaata 9094392  T
Q  265 agatctatcccaagaaag 282  Q
    |||||||| |||||||||    
T  9094393 agatctattccaagaaag 9094410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 176 - 283
Target Start/End: Complemental strand, 14344434 - 14344329
Alignment:
Q  176 tttattaaagcactaaaatataaaagaccggagaggcctgagccaatacaacagagttacaatgtgtaaaatctatgaaaagtaaatccagatctatccc 275  Q
    ||||| |||||| |||||||||||  |  ||||| ||||||  ||||| | | |||||||| |||||||||| ||||||||| |||  | ||||||||||    
T  14344434 tttatcaaagcaataaaatataaagta--ggagaagcctgaatcaataaatcggagttacattgtgtaaaatttatgaaaagaaaaatcggatctatccc 14344337  T
Q  276 aagaaagg 283  Q
    || |||||    
T  14344336 aaaaaagg 14344329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 74; Significance: 1e-33; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 205 - 351
Target Start/End: Original strand, 29473426 - 29473576
Alignment:
Q  205 ggagaggcctgagccaatacaacagagttacaatgtgtaaaatcta----tgaaaagtaaatccagatctatcccaagaaaggagaagacctgaggaaaa 300  Q
    |||||||||||| |||||||| ||||||||||||||| |||| |||    ||||||| ||| |  ||||||||||||||||||| ||||||  |||||||    
T  29473426 ggagaggcctgaaccaatacaccagagttacaatgtgaaaaacctacctatgaaaagaaaaacatgatctatcccaagaaaggaaaagacccaaggaaaa 29473525  T
Q  301 ggagtcaaagaccaccatagtacatagaaactaacaactgctacaaaacta 351  Q
    || ||||||||||||||||||| | ||||||||||||||||||| ||||||    
T  29473526 ggcgtcaaagaccaccatagtataaagaaactaacaactgctacgaaacta 29473576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 399 - 494
Target Start/End: Complemental strand, 25167964 - 25167869
Alignment:
Q  399 aaccaactattctgtatctgtcaaggtagctttggaggagcccttttgggcacgggtcctcattccggctgagttaaagctataaggcctcacttt 494  Q
    ||||||||||||||||||||||||||  ||||||||||  |||||||||||| | |||||| |||||||||||||||| ||| ||||| |||||||    
T  25167964 aaccaactattctgtatctgtcaaggcggctttggaggtacccttttgggcatgagtcctctttccggctgagttaaaactagaaggcttcacttt 25167869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 399 - 494
Target Start/End: Complemental strand, 10990145 - 10990050
Alignment:
Q  399 aaccaactattctgtatctgtcaaggtagctttggaggagcccttttgggcacgggtcctcattccggctgagttaaagctataaggcctcacttt 494  Q
    ||||||||||| ||||||||| | || |||||||||||| |||||||| ||||| ||||||||| ||||| ||||||||||| ||||  |||||||    
T  10990145 aaccaactattttgtatctgttagggcagctttggaggaacccttttgtgcacgagtcctcatttcggctaagttaaagctagaaggattcacttt 10990050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 399 - 476
Target Start/End: Original strand, 4263368 - 4263445
Alignment:
Q  399 aaccaactattctgtatctgtcaaggtagctttggaggagcccttttgggcacgggtcctcattccggctgagttaaa 476  Q
    |||||||||||| ||||||| ||||  |  ||||||||| |||||||| |||||||||||||||||||||||||||||    
T  4263368 aaccaactattccgtatctgccaagacaattttggaggaacccttttgagcacgggtcctcattccggctgagttaaa 4263445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 165 - 283
Target Start/End: Complemental strand, 3949728 - 3949611
Alignment:
Q  165 ttttttatttatttattaaagcactaaaatataaaagaccggagaggcctgagccaatacaacagagttacaatgtgtaaaatctatgaaaagtaaatcc 264  Q
    |||||||||| ||||| |||||| ||||||||||||| |  |||||| |||| ||||||||||||||  |||  |||||||| ||||||||||  || ||    
T  3949728 ttttttatttttttatcaaagcaataaaatataaaag-catgagaggtctgaaccaatacaacagagacacatagtgtaaaacctatgaaaagagaaacc 3949630  T
Q  265 agatctatcccaagaaagg 283  Q
     ||||||||| ||||||||    
T  3949629 ggatctatcctaagaaagg 3949611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 191 - 257
Target Start/End: Original strand, 5605422 - 5605488
Alignment:
Q  191 aaatataaaagaccggagaggcctgagccaatacaacagagttacaatgtgtaaaatctatgaaaag 257  Q
    ||||||| ||||  |||||||| ||||||||||||||||||| ||||||||||||| ||||||||||    
T  5605422 aaatatagaagataggagaggcttgagccaatacaacagagtcacaatgtgtaaaacctatgaaaag 5605488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 165 - 283
Target Start/End: Complemental strand, 25168237 - 25168119
Alignment:
Q  165 ttttttatttatttatt-aaagcactaaaatataaaagaccggagaggcctgagccaatacaacagagttacaatgtgtaaaatctatgaaaagtaaatc 263  Q
    |||||| ||| |||||| |||||| |||||||||||||   |||||||||||| ||||||||||||||| |||  |||||||| ||||||||||  || |    
T  25168237 ttttttttttttttattcaaagcagtaaaatataaaagta-ggagaggcctgaaccaatacaacagagtcacatagtgtaaaacctatgaaaagagaaac 25168139  T
Q  264 cagatctatcccaagaaagg 283  Q
     | ||||||||||| |||||    
T  25168138 taaatctatcccaataaagg 25168119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 402 - 503
Target Start/End: Complemental strand, 3949452 - 3949351
Alignment:
Q  402 caactattctgtatctgtcaaggtagctttggaggagcccttttgggcacgggtcctcattccggctgagttaaagctataaggcctcactttatgcacc 501  Q
    ||||||||||| |||||||||||  ||||||||||  ||||| ||  |||| |||||||||| |||| ||||||| ||| || || ||||||||| ||||    
T  3949452 caactattctgcatctgtcaaggcggctttggaggtacccttctgaacacgagtcctcattctggctcagttaaaactaaaaagcttcactttattcacc 3949353  T
Q  502 tg 503  Q
    ||    
T  3949352 tg 3949351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 176 - 283
Target Start/End: Original strand, 2606608 - 2606714
Alignment:
Q  176 tttattaaagcactaaaatataaaagaccggagaggcctgagccaatacaacagagttacaatgtgtaaaatctatgaaaagtaaatccagatctatccc 275  Q
    ||||| |||||| ||||||||||||| | ||||| |||||| |||||||| |||||| |||| ||| |||| ||||||||||  || |  |||||||||     
T  2606608 tttatcaaagcagtaaaatataaaag-ctggagaagcctgaaccaatacatcagagtcacaaagtgaaaaacctatgaaaagagaaactggatctatcct 2606706  T
Q  276 aagaaagg 283  Q
    ||||||||    
T  2606707 aagaaagg 2606714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 399 - 477
Target Start/End: Original strand, 5605651 - 5605729
Alignment:
Q  399 aaccaactattctgtatctgtcaaggtagctttggaggagcccttttgggcacgggtcctcattccggctgagttaaag 477  Q
    ||||||||||| ||||||||| |||| ||||||| || | |  ||||| ||||| | |||| |||||||||||||||||    
T  5605651 aaccaactattttgtatctgttaaggcagctttgaagaaactattttgagcacgagccctcgttccggctgagttaaag 5605729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 164 - 232
Target Start/End: Complemental strand, 13535452 - 13535385
Alignment:
Q  164 attttttatttatttattaaagcactaaaatataaaagaccggagaggcctgagccaatacaacagagt 232  Q
    ||||||| ||| ||||| |||||||||||||| ||||||| ||||| | |||| ||||||||| |||||    
T  13535452 attttttttttttttatcaaagcactaaaata-aaaagacaggagatgtctgaaccaatacaatagagt 13535385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 4e-27; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 401 - 507
Target Start/End: Original strand, 24239844 - 24239950
Alignment:
Q  401 ccaactattctgtatctgtcaaggtagctttggaggagcccttttgggcacgggtcctcattccggctgagttaaagctataaggcctcactttatgcac 500  Q
    ||||||||| |||||||| |||| ||||||| ||||  ||||||||||||||||||||||||||||||||||||||||||  |||| ||||||||| |||    
T  24239844 ccaactattatgtatctgccaagatagcttttgaggtacccttttgggcacgggtcctcattccggctgagttaaagctagtaggcttcactttattcac 24239943  T
Q  501 ctgcttc 507  Q
    || ||||    
T  24239944 ctacttc 24239950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 175 - 292
Target Start/End: Complemental strand, 7492382 - 7492265
Alignment:
Q  175 atttattaaagcactaaaatataaaagaccggagaggcctgagccaatacaacagagttacaatgtgtaaaatctatgaaaagtaaatccagatctatcc 274  Q
    |||||| |||| | ||||||||||||||| ||| |||||| | |||||||||||||| ||||  | |||||| |||| |||||  ||||| |||| ||||    
T  7492382 atttatcaaagtaataaaatataaaagacaggataggcctcaaccaatacaacagagatacatagagtaaaacctattaaaagagaatccggatcaatcc 7492283  T
Q  275 caagaaaggagaagacct 292  Q
    |||||||||| |||||||    
T  7492282 caagaaaggaaaagacct 7492265  T

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Target: chr4; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 399 - 476
Target Start/End: Complemental strand, 37050122 - 37050045
Alignment:
Q  399 aaccaactattctgtatctgtcaaggtagctttggaggagcccttttgggcacgggtcctcattccggctgagttaaa 476  Q
    ||||||||||| ||||||| |||| |  ||||||||||  |||||||||||||| |||||||||||||||||||||||    
T  37050122 aaccaactattttgtatctctcaaagcggctttggaggtacccttttgggcacgagtcctcattccggctgagttaaa 37050045  T

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Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 176 - 292
Target Start/End: Complemental strand, 7500432 - 7500316
Alignment:
Q  176 tttattaaagcactaaaatataaaagaccggagaggcctgagccaatacaacagagttacaatgtgtaaaatctatgaaaagtaaatccagatctatccc 275  Q
    ||||| |||||| |||||||||| |||| ||| |||||||| |||||||||||||  ||||  | |||||| |||| |||||  ||||| |||| |||||    
T  7500432 tttatcaaagcaataaaatataacagacaggataggcctgaaccaatacaacagaaatacatagagtaaaacctattaaaagagaatccggatcaatccc 7500333  T
Q  276 aagaaaggagaagacct 292  Q
    ||||||||| |||||||    
T  7500332 aagaaaggaaaagacct 7500316  T

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Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 441 - 507
Target Start/End: Original strand, 16593810 - 16593876
Alignment:
Q  441 cttttgggcacgggtcctcattccggctgagttaaagctataaggcctcactttatgcacctgcttc 507  Q
    ||||||||||||||| |||||||||||| ||||||| |||  |||||||||||| ||||| ||||||    
T  16593810 cttttgggcacgggttctcattccggctaagttaaaactagcaggcctcactttgtgcacgtgcttc 16593876  T

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Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 441 - 507
Target Start/End: Complemental strand, 19852563 - 19852497
Alignment:
Q  441 cttttgggcacgggtcctcattccggctgagttaaagctataaggcctcactttatgcacctgcttc 507  Q
    ||||||||||||||| |||||||||| ||||||||| |||  |||||||||||| ||||| ||||||    
T  19852563 cttttgggcacgggttctcattccgggtgagttaaaactagcaggcctcactttgtgcacgtgcttc 19852497  T

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Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 177 - 283
Target Start/End: Complemental strand, 37050382 - 37050277
Alignment:
Q  177 ttattaaagcactaaaatataaaagaccggagaggcctgagccaatacaacagagttacaatgtgtaaaatctatgaaaagtaaatccagatctatccca 276  Q
    |||| |||||| ||||||||||||| |  |||||||| || ||||||||||||||| |||  |||||||| ||||||||||  || |  |||||||||||    
T  37050382 ttatcaaagcaataaaatataaaag-catgagaggcccgaaccaatacaacagagtcacatagtgtaaaacctatgaaaagagaaactggatctatccca 37050284  T
Q  277 agaaagg 283  Q
    | |||||    
T  37050283 ataaagg 37050277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 399 - 507
Target Start/End: Original strand, 16832139 - 16832247
Alignment:
Q  399 aaccaactattctgtatctgtcaaggtagctttggaggagcccttttgggcacgggtcctcattccggctgagttaaagctataaggcctcactttatgc 498  Q
    |||| |||||| |||||||| ||||  |||||||||||  ||||||||  |||| |||||||||||  ||||||||||| ||  |||| ||||||| | |    
T  16832139 aaccgactattatgtatctgccaagacagctttggaggcacccttttgaacacgtgtcctcattccaactgagttaaagttagtaggcttcactttgttc 16832238  T
Q  499 acctgcttc 507  Q
    || ||||||    
T  16832239 acatgcttc 16832247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 176 - 232
Target Start/End: Original strand, 18522037 - 18522093
Alignment:
Q  176 tttattaaagcactaaaatataaaagaccggagaggcctgagccaatacaacagagt 232  Q
    ||||| |||||| ||||||||||||||| |||||||||||| |||||| | ||||||    
T  18522037 tttatcaaagcaataaaatataaaagacaggagaggcctgaaccaatatatcagagt 18522093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 182 - 232
Target Start/End: Complemental strand, 19852833 - 19852784
Alignment:
Q  182 aaagcactaaaatataaaagaccggagaggcctgagccaatacaacagagt 232  Q
    |||||||||||||| ||||||| ||||| |||||| |||||||||||||||    
T  19852833 aaagcactaaaata-aaaagacaggagatgcctgaaccaatacaacagagt 19852784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 9e-22; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 402 - 507
Target Start/End: Original strand, 19407845 - 19407950
Alignment:
Q  402 caactattctgtatctgtcaaggtagctttggaggagcccttttgggcacgggtcctcattccggctgagttaaagctataaggcctcactttatgcacc 501  Q
    ||||||| |||||||||  | ||  ||||||||||  |||||||||||||||||||||||||||||||||||||||||| ||||  ||||||| | ||||    
T  19407845 caactatactgtatctgctagggcggctttggaggtacccttttgggcacgggtcctcattccggctgagttaaagctagaaggaatcactttgttcacc 19407944  T
Q  502 tgcttc 507  Q
    ||||||    
T  19407945 tgcttc 19407950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 164 - 281
Target Start/End: Original strand, 7543832 - 7543949
Alignment:
Q  164 attttttatttatttattaaagcactaaaatataaaagaccggagaggcctgagccaatacaacagagttacaatgtgtaaaatctatgaaaagtaaatc 263  Q
    ||||||| ||| || || |||||| ||||||||||||||| |||||||||||| |||||||||||||| ||||  | |||||| ||||||||||  || |    
T  7543832 atttttttttttttaataaaagcaataaaatataaaagacaggagaggcctgaaccaatacaacagagatacatagagtaaaacctatgaaaagagaaac 7543931  T
Q  264 cagatctatcccaagaaa 281  Q
    | | ||||||||||||||    
T  7543932 cgggtctatcccaagaaa 7543949  T

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Target: chr7; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 176 - 257
Target Start/End: Original strand, 19407632 - 19407713
Alignment:
Q  176 tttattaaagcactaaaatataaaagaccggagaggcctgagccaatacaacagagttacaatgtgtaaaatctatgaaaag 257  Q
    ||||| |||| | ||||||||||||||| |||||||||||| |||||||||||||| ||||  |||||||| ||||||||||    
T  19407632 tttatcaaagtaataaaatataaaagacaggagaggcctgaaccaatacaacagagatacatagtgtaaaacctatgaaaag 19407713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 205 - 346
Target Start/End: Complemental strand, 26180443 - 26180301
Alignment:
Q  205 ggagaggcctgagccaatacaacagagttacaatgtgtaaaatctatgaaaagtaaatccagatctatcccaagaaaggagaagacctgaggaaa-agga 303  Q
    ||||||||||||  ||||||| |||||| |||||| ||||||| || |||||| ||| |  ||||||||| || |||||| ||| |||||| ||| ||      
T  26180443 ggagaggcctgaaacaatacatcagagtcacaatgggtaaaatatacgaaaagaaaaactggatctatcctaaaaaaggaaaagtcctgagaaaagagat 26180344  T
Q  304 gtcaaagaccaccatagtacatagaaactaacaactgctacaa 346  Q
    |||||||||||||||  |||  | |||||||||||||||||||    
T  26180343 gtcaaagaccaccattatacggaaaaactaacaactgctacaa 26180301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 399 - 507
Target Start/End: Original strand, 26449535 - 26449643
Alignment:
Q  399 aaccaactattctgtatctgtcaaggtagctttggaggagcccttttgggcacgggtcctcattccggctgagttaaagctataaggcctcactttatgc 498  Q
    |||||||||||  |||| |||| ||| || ||||||||  ||||||||| |||| |||||||||||||||||| | ||||||  |||| ||||| | | |    
T  26449535 aaccaactatttggtatatgtcgaggcagttttggaggtacccttttggacacgagtcctcattccggctgagctgaagctagtaggcttcactctgttc 26449634  T
Q  499 acctgcttc 507  Q
    |||||||||    
T  26449635 acctgcttc 26449643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 176 - 333
Target Start/End: Original strand, 29132186 - 29132344
Alignment:
Q  176 tttattaaagcactaaaatataaaagaccggagaggcctgagccaatacaacagagttacaatgtgtaaaatctatgaaaagtaaatccagatctatccc 275  Q
    ||||| |||||| ||| ||||||||||| | |||| | ||| ||||||||  ||||| || | ||||||||  ||||||||| ||| ||  |||||||||    
T  29132186 tttatcaaagcaataacatataaaagacagaagagacatgaaccaatacagtagagtcacgaagtgtaaaacttatgaaaagaaaaaccgaatctatccc 29132285  T
Q  276 aagaaaggagaagacctgaggaaa-aggagtcaaagaccaccatagtacatagaaacta 333  Q
    ||||||||| |||  || |  ||| ||| ||||||||| ||||| ||||||| ||||||    
T  29132286 aagaaaggaaaagttctaaaaaaagaggtgtcaaagacgaccattgtacataaaaacta 29132344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 172 - 283
Target Start/End: Complemental strand, 34548266 - 34548156
Alignment:
Q  172 tttatttattaaagcactaaaatataaaagaccggagaggcctgagccaatacaacagagttacaatgtgtaaaatctatgaaaagtaaatccagatcta 271  Q
    |||||| || |||||| |||||||||||||   ||||||| |||| |||||||| |||||| ||   ||| |||||||||||||||  ||  | ||||||    
T  34548266 tttattgatcaaagcagtaaaatataaaagta-ggagaggtctgaaccaatacatcagagtcacttagtgaaaaatctatgaaaagagaaatcggatcta 34548168  T
Q  272 tcccaagaaagg 283  Q
    ||||||||||||    
T  34548167 tcccaagaaagg 34548156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0531 (Bit Score: 49; Significance: 8e-19; HSPs: 2)
Name: scaffold0531
Description:

Target: scaffold0531; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 399 - 507
Target Start/End: Complemental strand, 10380 - 10272
Alignment:
Q  399 aaccaactattctgtatctgtcaaggtagctttggaggagcccttttgggcacgggtcctcattccggctgagttaaagctataaggcctcactttatgc 498  Q
    ||||||||||| |||| ||| ||||  ||||||||||   | ||||| |||||||||||||||||||||||||||||| |||  |||||||||||| |||    
T  10380 aaccaactattatgtagctgccaagacagctttggagttactcttttaggcacgggtcctcattccggctgagttaaaactagcaggcctcactttgtgc 10281  T
Q  499 acctgcttc 507  Q
    || ||||||    
T  10280 acgtgcttc 10272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0531; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 182 - 232
Target Start/End: Complemental strand, 10608 - 10559
Alignment:
Q  182 aaagcactaaaatataaaagaccggagaggcctgagccaatacaacagagt 232  Q
    |||||||||||||| ||||||| ||||| |||||| |||||||||||||||    
T  10608 aaagcactaaaata-aaaagacaggagatgcctgaaccaatacaacagagt 10559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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