View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4622-Insertion-12 (Length: 408)
Name: NF4622-Insertion-12
Description: NF4622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4622-Insertion-12 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 77 - 408
Target Start/End: Complemental strand, 34869325 - 34868981
Alignment:
| Q |
77 |
atcagaaaaatattaattttcttaattgcattttcaagtgaatcaattaactaaacaaatccaaaatgtatatcatcaatttagtttggtctattcaact |
176 |
Q |
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| T |
34869325 |
atcagaaaaatattaattttcttaattgcattttcaagtgaatcaattaactaaacaaatccaaaatgtatatcatcaatttagtttggtctattcaact |
34869226 |
T |
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| Q |
177 |
tttaaaaaatgatgaaaattgaacaaaatcaatgtaaaagacatctaatttaaaccttgatcacaac-------------gttttgccttttacctaaaa |
263 |
Q |
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| T |
34869225 |
tttaaaaaatgatgaaaattgaacaaaatcaatgtaaaagacatctaatttaaaccttgatcagaacgtttaatctaaaagttttaccttttatctaaaa |
34869126 |
T |
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| Q |
264 |
aggcaaaatgataattaactgttagaatttattgagaagcttctctcataagctaccgaaaacgcgtgaaattatgaaacggtcaacactctgcaactcg |
363 |
Q |
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| T |
34869125 |
aggcaaaatgataattaactgttagaatttattgagaagcttctctcataagctaccgaaaacacgtgaaattgtgaaacggtcaacactctgcaactcg |
34869026 |
T |
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| Q |
364 |
cgaaccctagcagcaccgtgtttctcctcttctccatcttccttc |
408 |
Q |
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| T |
34869025 |
cgaaccctagcagcaccgtgtctctcctcttctccatcttccttc |
34868981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 8 - 79
Target Start/End: Complemental strand, 34869435 - 34869364
Alignment:
| Q |
8 |
gcaacaaacacaaaagaatcaatcaatttagtttggtctgattccacttttaaaaaattaatttgtttgatc |
79 |
Q |
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| T |
34869435 |
gcaacaaacacaaaagaatcaatcaatttagtttggtctgactccacttttaaaaaattaatttgtttgatc |
34869364 |
T |
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