View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4622-Insertion-16 (Length: 119)

Name: NF4622-Insertion-16
Description: NF4622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4622-Insertion-16
NF4622-Insertion-16
[»] chr7 (4 HSPs)
chr7 (44-119)||(34649306-34649381)
chr7 (43-114)||(28467751-28467822)
chr7 (8-50)||(34649403-34649445)
chr7 (55-113)||(28537554-28537612)
[»] chr8 (2 HSPs)
chr8 (43-106)||(24214247-24214310)
chr8 (8-47)||(24214186-24214225)
[»] chr4 (1 HSPs)
chr4 (44-113)||(12269170-12269238)
[»] chr1 (1 HSPs)
chr1 (44-113)||(19516380-19516448)
[»] chr5 (1 HSPs)
chr5 (43-96)||(39082169-39082222)
[»] chr2 (2 HSPs)
chr2 (44-113)||(35030513-35030581)
chr2 (63-114)||(36148360-36148410)


Alignment Details
Target: chr7 (Bit Score: 72; Significance: 3e-33; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 3e-33
Query Start/End: Original strand, 44 - 119
Target Start/End: Complemental strand, 34649381 - 34649306
Alignment:
Q  44 ttttttggaagaaattatgtatgatttttatgagtttaaattataatatttaagttaatatttgccgctcttccaa 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  34649381 ttttttggaagaaattatgtatgatttttatgagtttaaattataatatttaagttaatatttgccgctcctccaa 34649306  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000004
Query Start/End: Original strand, 43 - 114
Target Start/End: Original strand, 28467751 - 28467822
Alignment:
Q  43 attttttggaagaaattatgtatgatttttatgagtttaaattataatatttaagttaatatttgccgctct 114  Q
    |||||||| | |||||||||||| | |||||||| ||| ||||||||||||| |||||||||||| ||||||    
T  28467751 attttttgaatgaaattatgtataacttttatgaatttcaattataatattttagttaatatttgtcgctct 28467822  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 50
Target Start/End: Complemental strand, 34649445 - 34649403
Alignment:
Q  8 ctatctagttagtagatagtatatttggagcttcaattttttg 50  Q
    |||||||||| ||||||||||||||||||||||||||||||||    
T  34649445 ctatctagttggtagatagtatatttggagcttcaattttttg 34649403  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 55 - 113
Target Start/End: Original strand, 28537554 - 28537612
Alignment:
Q  55 aaattatgtatgatttttatgagtttaaattataatatttaagttaatatttgccgctc 113  Q
    |||||||||| || |||||||| ||| ||||||||||||| |||||||||||| |||||    
T  28537554 aaattatgtacgacttttatgaatttcaattataatattttagttaatatttgacgctc 28537612  T

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Target: chr8 (Bit Score: 44; Significance: 2e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 43 - 106
Target Start/End: Original strand, 24214247 - 24214310
Alignment:
Q  43 attttttggaagaaattatgtatgatttttatgagtttaaattataatatttaagttaatattt 106  Q
    |||||||||| |||||||||||||| |||||||| ||| ||||||||||||| |||||||||||    
T  24214247 attttttggatgaaattatgtatgacttttatgaatttcaattataatattttagttaatattt 24214310  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 47
Target Start/End: Original strand, 24214186 - 24214225
Alignment:
Q  8 ctatctagttagtagatagtatatttggagcttcaatttt 47  Q
    |||||||||| |||||||||||||||||||||| ||||||    
T  24214186 ctatctagttggtagatagtatatttggagctttaatttt 24214225  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 44 - 113
Target Start/End: Complemental strand, 12269238 - 12269170
Alignment:
Q  44 ttttttggaagaaattatgtatgatttttatgagtttaaattataatatttaagttaatatttgccgctc 113  Q
    ||||| ||| |||||||| ||||| |||||||| ||||||||||||||||| ||||||||||||||||||    
T  12269238 tttttcggatgaaattatatatgacttttatgaatttaaattataatattt-agttaatatttgccgctc 12269170  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 44 - 113
Target Start/End: Original strand, 19516380 - 19516448
Alignment:
Q  44 ttttttggaagaaattatgtatgatttttatgagtttaaattataatatttaagttaatatttgccgctc 113  Q
    ||||||||| |||||| | ||||| |||||||| ||| ||||||||||||| ||||||||||||| ||||    
T  19516380 ttttttggatgaaattgtatatgacttttatgaatttcaattataatattt-agttaatatttgctgctc 19516448  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 43 - 96
Target Start/End: Complemental strand, 39082222 - 39082169
Alignment:
Q  43 attttttggaagaaattatgtatgatttttatgagtttaaattataatatttaa 96  Q
    |||||||||| |||||| | ||| |||||||||| ||| |||||||||||||||    
T  39082222 attttttggatgaaattgtatataatttttatgaatttcaattataatatttaa 39082169  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 44 - 113
Target Start/End: Complemental strand, 35030581 - 35030513
Alignment:
Q  44 ttttttggaagaaattatgtatgatttttatgagtttaaattataatatttaagttaatatttgccgctc 113  Q
    |||||||||| ||||| | ||||| |||||||| ||| ||||||||||||| |||||| |||||| ||||    
T  35030581 ttttttggaaaaaattgtatatgacttttatgaattttaattataatattt-agttaacatttgcggctc 35030513  T

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Target: chr2; HSP #2
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 63 - 114
Target Start/End: Complemental strand, 36148410 - 36148360
Alignment:
Q  63 tatgatttttatgagtttaaattataatatttaagttaatatttgccgctct 114  Q
    ||||| |||||||| ||| ||||||||||||| |||||||||||||| ||||    
T  36148410 tatgacttttatgaatttcaattataatattt-agttaatatttgccactct 36148360  T

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