View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4622-Insertion-2 (Length: 903)
Name: NF4622-Insertion-2
Description: NF4622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4622-Insertion-2 |
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Alignment Details
Target: chr5 (Bit Score: 344; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 296 - 663
Target Start/End: Original strand, 2708531 - 2708898
Alignment:
| Q |
296 |
aacaatatacaaacatttgcattagtgctaaacattaactattgtctgttcacacaatcaacagaatatataccttgtctgcactatgcttcaacttgta |
395 |
Q |
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| T |
2708531 |
aacaatatacaaacatttgcattagtgcttaacattaactattgtctgttcacacaatcaacagaatatataccttgtctgcactatgcttcaacttgta |
2708630 |
T |
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| Q |
396 |
tattgataggctacgagacaaacccaacctcataggaggcatatcttgaacggcaagatcagttacaagttctgtcaactgatatcgaatacctcgcatt |
495 |
Q |
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| T |
2708631 |
tattgataggctaccagacaaacccaacctcatcggaggcatatcttgaacggcgagatcagttacaagttctgtcaactgatatcgaatacctcgcatt |
2708730 |
T |
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| Q |
496 |
agctccataacagcgttgttgtgaaaacatttgattttctgcaaagtaaccaacaaagttagctatttgatgaaagacatgtaaaacgtcgttacaagtt |
595 |
Q |
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| T |
2708731 |
agctccataacagcgttgttgtgaaaacatttgattttctgcaaagtaaccaacaaagttagctatttgatgaaagacatgtaaaacgtcgttacaagtt |
2708830 |
T |
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| Q |
596 |
actaggggaacttaagcagcacaccggtcccagtttttccttaatgatacaccccatttttgcatcag |
663 |
Q |
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| T |
2708831 |
actaggggaacttaagtagcacaccggtcccagtttttccttaatgatacaccccagttttgcatcag |
2708898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 804 - 903
Target Start/End: Original strand, 2709441 - 2709540
Alignment:
| Q |
804 |
tatcgaccttattatatggtaacaggtgctaataaatcctttagcatgtcaactcctaaacctccgacttctaacaaaagagttttgaagtttgattgta |
903 |
Q |
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| T |
2709441 |
tatcgaccttattatatggtatcaggtgctaataaatcctttagcatgtcaactcctaaacctccgacttctaacaaaagagtttagaagtttgattgta |
2709540 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 367 - 539
Target Start/End: Original strand, 2702663 - 2702835
Alignment:
| Q |
367 |
accttgtctgcactatgcttcaacttgtatattgataggctacgagacaaacccaacctcataggaggcatatcttgaacggcaagatcagttacaagtt |
466 |
Q |
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| T |
2702663 |
accttgtctgcactgaacttcaacttgtatcttgataggctatgagacaaacccaagctcatcggagccatgtcttgaacagcgaggccagttatgagtt |
2702762 |
T |
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| Q |
467 |
ctgtcaactgatatcgaatacctcgcattagctccataacagcgttgttgtgaaaacatttgattttctgcaa |
539 |
Q |
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| T |
2702763 |
ccgtcaactgatatcgaatacctcgcattatctccataacagcattgctgtgaacacagtcgattttctgcaa |
2702835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 666 - 732
Target Start/End: Original strand, 2709302 - 2709367
Alignment:
| Q |
666 |
aacaatttgaaaagggcaaaacctgctggagtttcaaataatacaagcatcttatcacttttccaac |
732 |
Q |
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| T |
2709302 |
aacaatttgaaaagggcaaaacctgctggagtttcaaataatac-agcatcttatcacttttccaac |
2709367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 15 - 94
Target Start/End: Original strand, 2702422 - 2702504
Alignment:
| Q |
15 |
ggaaaatgccagccata---ttctcgaaccctcatggcatatgcattcaattctttatcaaaattgtcaagtaaaccaatagc |
94 |
Q |
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| T |
2702422 |
ggaaaatgccagccataccattctcgaaccctcatggcatatgtattcaactctttatcgaggtcgtcgagtaaaccaatagc |
2702504 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 7e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 666 - 732
Target Start/End: Complemental strand, 39833075 - 39833009
Alignment:
| Q |
666 |
aacaatttgaaaagggcaaaacctgctggagtttcaaataatacaagcatcttatcacttttccaac |
732 |
Q |
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| T |
39833075 |
aacaatttgaaaagggcaaaacctgctggtgtttcaaataatacaagcatcttatcacttttccaac |
39833009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 365 - 536
Target Start/End: Complemental strand, 26713866 - 26713695
Alignment:
| Q |
365 |
ataccttgtctgcactatgcttcaacttgtatattgataggctacgagacaaacccaacctcataggaggcatatcttgaacggcaagatcagttacaag |
464 |
Q |
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| T |
26713866 |
ataccttgtcggcgctaaacttcagcctgtatctggataagctatgagacaaacccaagctcataggggccatgtcttgaacagctagacctgctatgag |
26713767 |
T |
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| Q |
465 |
ttctgtcaactgatatcgaatacctcgcattagctccataacagcgttgttgtgaaaacatttgattttctg |
536 |
Q |
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| T |
26713766 |
ttcattcaattgatatctgacacctctcatcaactccataacagcattgttgtgaacacattcgattttctg |
26713695 |
T |
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