View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4622-Insertion-3 (Length: 843)

Name: NF4622-Insertion-3
Description: NF4622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4622-Insertion-3
NF4622-Insertion-3
[»] chr4 (2 HSPs)
chr4 (33-843)||(31107524-31108335)
chr4 (768-805)||(31105078-31105115)


Alignment Details
Target: chr4 (Bit Score: 691; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 691; E-Value: 0
Query Start/End: Original strand, 33 - 843
Target Start/End: Original strand, 31107524 - 31108335
Alignment:
Q  33 caaatagaataaagtgttgaatacgccactaaaattttcattgagattttgtctgcgtcattgcctttgtgtgaaattgattgggaaaagcgagtatgat 132  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  31107524 caaatagaataaagtgttgaatacgccactaaaattttcattgagattttgtctgcgtcattgcctttgtgtgaaattgattgggaaaagcgagcatgat 31107623  T
Q  133 gatgaaggtaaccactaaaccagccatactacaaacttaacaaagcaatctctgaaaatccagaatataactagatgttgaggactacttgaggtattgt 232  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31107624 gatgaaggtaaccactaaaccagccatactacaaacttaacaaagcaatctctgaaaatccagaatataactagatgttgaggactacttgaggtattgt 31107723  T
Q  233 tttttnnnnnnnnn-tgaaaattatgaggtacatagaaatatgtatttaaatttatagatcagttacgatgcaagaaaaaatgataccttataaacaata 331  Q
    |||||          |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  31107724 tttttaaaaaaaaaatgaaaattatgaggtacatagaaatatgtatttaaatttatagatcagttacgatgcaagaaaaaatgatacgttataaacaata 31107823  T
Q  332 agctcaaacatggatctcaaaatctttataaagcttatcagaaaattatcgttaccaaacaactctgtcaccatnnnnnnnttataaatgattagatatc 431  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||       |||||||||||||||||||    
T  31107824 agctcaaacatggatctcaaaatctttataaagcttatcagaaaattatcgttaccaaacaactctatcaccataaaaaaattataaatgattagatatc 31107923  T
Q  432 agatcattgatcaatatgcaaaaaagtcttcattaatttcccaactttacctagctgcataaccttactactttaacactatcaaacctcagatacataa 531  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  31107924 agatcattgatcaatatgcaaaaaagtcttcatttatttcccaactttacctagctgcataaccttactactttaacactatcaaacctcagatacatga 31108023  T
Q  532 actgagttagttaatttctgttttctgctatatgtcattcaaatcatacgagggacaacttccatcaaaagaagaaaaaactattcatttgttttatacc 631  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31108024 actgagttagttaatttctgttttctgttatatgtcattcaaatcatacgagggacaacttccatcaaaagaagaaaaaactattcatttgttttatacc 31108123  T
Q  632 acttccatcatatatacatgagatatttaccagttacaaaaacatcaaagtaaagcnnnnnnnttctcaagggacaacttaatattaagataaaccaaaa 731  Q
    |||||||||||  |||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||| |||||||||| |||    
T  31108124 acttccatcatcaatacatgagatatttaccagttacaaaaacatcaaagtaaagcaaaaaaattctcaagggacaacttaatatgaagataaaccgaaa 31108223  T
Q  732 ttaaaactcaacaagcatcaaaaagtatatataagcatagaaaagaaaattgctgatgctataccctattcttcctttcttcttcaccttcctcagttga 831  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31108224 ttaaaactcaacaagcatcaaaaagtatatataagcatagaaaataaaattgctgatgctataccctattcttcctttcttcttcaccttcctcagttga 31108323  T
Q  832 tactctcatcca 843  Q
    ||||||||||||    
T  31108324 tactctcatcca 31108335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 768 - 805
Target Start/End: Original strand, 31105078 - 31105115
Alignment:
Q  768 atagaaaagaaaattgctgatgctataccctattcttc 805  Q
    ||||||||||||| ||||||||||||| ||||||||||    
T  31105078 atagaaaagaaaactgctgatgctatatcctattcttc 31105115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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