View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4622-Insertion-4 (Length: 804)

Name: NF4622-Insertion-4
Description: NF4622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4622-Insertion-4
NF4622-Insertion-4
[»] chr5 (14 HSPs)
chr5 (482-662)||(27845706-27845886)
chr5 (7-184)||(27846079-27846258)
chr5 (315-491)||(27845900-27846071)
chr5 (676-804)||(27845578-27845721)
chr5 (170-232)||(6515334-6515396)
chr5 (170-232)||(14206502-14206566)
chr5 (170-232)||(40223680-40223743)
chr5 (170-232)||(3141609-3141672)
chr5 (170-231)||(3634608-3634670)
chr5 (170-232)||(13613858-13613922)
chr5 (170-232)||(21749471-21749535)
chr5 (312-350)||(8787194-8787232)
chr5 (170-232)||(5130272-5130336)
chr5 (170-232)||(12661841-12661905)
[»] chr1 (13 HSPs)
chr1 (170-232)||(49425850-49425912)
chr1 (170-231)||(5304725-5304786)
chr1 (170-232)||(48872846-48872909)
chr1 (170-232)||(8391234-8391296)
chr1 (168-232)||(5367934-5367999)
chr1 (170-232)||(7503578-7503642)
chr1 (170-232)||(31480029-31480093)
chr1 (170-232)||(45272052-45272118)
chr1 (170-232)||(31703375-31703438)
chr1 (320-350)||(22674707-22674737)
chr1 (312-346)||(26585211-26585245)
chr1 (170-215)||(4638056-4638101)
chr1 (170-232)||(15061958-15062022)
[»] chr4 (18 HSPs)
chr4 (170-232)||(51039012-51039074)
chr4 (170-232)||(22257091-22257154)
chr4 (170-232)||(30973697-30973759)
chr4 (170-232)||(54036425-54036487)
chr4 (170-232)||(36792445-36792509)
chr4 (170-215)||(51318832-51318877)
chr4 (170-232)||(9567585-9567648)
chr4 (170-232)||(48099923-48099986)
chr4 (170-232)||(1580177-1580241)
chr4 (170-232)||(6953282-6953346)
chr4 (170-232)||(31240761-31240825)
chr4 (170-231)||(41952942-41953005)
chr4 (315-349)||(35017149-35017183)
chr4 (320-350)||(40629386-40629416)
chr4 (172-229)||(43168613-43168671)
chr4 (174-215)||(3664665-3664706)
chr4 (170-232)||(39241197-39241261)
chr4 (170-232)||(48372120-48372184)
[»] chr2 (10 HSPs)
chr2 (170-231)||(7428543-7428604)
chr2 (170-232)||(26321592-26321655)
chr2 (168-232)||(16577580-16577645)
chr2 (170-232)||(45515494-45515557)
chr2 (170-232)||(19913897-19913961)
chr2 (312-348)||(10288147-10288183)
chr2 (312-347)||(14891116-14891151)
chr2 (170-231)||(9202411-9202473)
chr2 (312-345)||(3091741-3091774)
chr2 (163-220)||(44287456-44287512)
[»] chr7 (11 HSPs)
chr7 (163-232)||(19426693-19426763)
chr7 (170-232)||(22330526-22330589)
chr7 (170-232)||(47424880-47424943)
chr7 (170-231)||(7390669-7390731)
chr7 (170-232)||(7807169-7807231)
chr7 (170-232)||(28596990-28597056)
chr7 (162-206)||(40842547-40842591)
chr7 (170-221)||(32154445-32154496)
chr7 (170-232)||(36990154-36990216)
chr7 (170-215)||(27778193-27778238)
chr7 (164-220)||(37352110-37352166)
[»] chr6 (4 HSPs)
chr6 (170-232)||(25166740-25166801)
chr6 (184-232)||(32149602-32149650)
chr6 (162-220)||(276989-277046)
chr6 (170-232)||(9954661-9954725)
[»] chr3 (10 HSPs)
chr3 (170-232)||(43169649-43169711)
chr3 (170-232)||(44365186-44365250)
chr3 (170-232)||(51650467-51650533)
chr3 (170-232)||(31249216-31249280)
chr3 (170-228)||(25828791-25828849)
chr3 (168-232)||(32687852-32687918)
chr3 (168-206)||(36318173-36318211)
chr3 (168-206)||(46003847-46003885)
chr3 (312-345)||(1295332-1295365)
chr3 (170-232)||(6126567-6126631)
[»] chr8 (16 HSPs)
chr8 (173-232)||(28570306-28570365)
chr8 (173-232)||(28577899-28577958)
chr8 (170-232)||(45101509-45101572)
chr8 (170-232)||(9963799-9963862)
chr8 (170-232)||(30925549-30925612)
chr8 (168-232)||(34474062-34474129)
chr8 (170-232)||(37101580-37101644)
chr8 (170-232)||(20473892-20473955)
chr8 (170-221)||(41703441-41703492)
chr8 (168-206)||(32175096-32175134)
chr8 (170-232)||(3650226-3650290)
chr8 (170-232)||(14029137-14029201)
chr8 (170-232)||(21648825-21648889)
chr8 (163-220)||(31249540-31249596)
chr8 (170-232)||(42543375-42543439)
chr8 (170-215)||(42768016-42768061)
[»] scaffold0060 (1 HSPs)
scaffold0060 (170-232)||(6930-6993)
[»] scaffold0001 (1 HSPs)
scaffold0001 (170-215)||(395993-396038)
[»] scaffold0204 (1 HSPs)
scaffold0204 (170-212)||(27474-27516)


Alignment Details
Target: chr5 (Bit Score: 143; Significance: 1e-74; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 482 - 662
Target Start/End: Complemental strand, 27845886 - 27845706
Alignment:
Q  482 ataaaactatgaaatataaagtttaaatttgggtaagattttagtctaacaatatcgtgtcaattgacatgaatacacttatttaatagannnnnnnnnn 581  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||              
T  27845886 ataaaactatgaaatataaagtttaaatttgggtaagattttagtctaacaatatcgtgtcaattgatatgaatatacttatttaatagatttttttttt 27845787  T
Q  582 acatggtctttaatcggttaaaatagaaatgaatctcactgaattaggctacacataaatagcatgtgtaatgaaaatgtt 662  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27845786 acatggtctttaatcggttaaaatagaaatgaatctcactgaattaggctacacataaatagcatgtgtaatgaaaatgtt 27845706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 7 - 184
Target Start/End: Complemental strand, 27846258 - 27846079
Alignment:
Q  7 aaaaagtaaataaatcttgttagggatcgatggcttgggagataaagctttgaatattgtttttcaaggttatttttgttgttgagatgaaaaggtggat 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||    
T  27846258 aaaaagtaaataaatcttgttagggatcgatggcttgggagataaagctttaaagattgtttttcaaggttatttttgttgttgagatgaaaaggtggat 27846159  T
Q  107 atgggatcctctgtaggagtgggatcgtaaatgttttatttttcatat--tatatacatgagaaatgatatttaaacaac 184  Q
    ||||| |||||| |||||||||||||||||||||||||||||| ||||  |||||| ||||||||||| |||| ||||||    
T  27846158 atggggtcctctataggagtgggatcgtaaatgttttattttttatattatatatatatgagaaatgaaatttgaacaac 27846079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 315 - 491
Target Start/End: Complemental strand, 27846071 - 27845900
Alignment:
Q  315 tcacgaaatagttgtacaaatatcatttctctatatgcatacatgcaccaaactccatatcannnnnnnnnnnnnggttacaaactccatatcattcaaa 414  Q
    ||||||| |||||||||| ||||||||| ||||||| |||||| ||||||||||||||||||              ||||||||||||||||||||||||    
T  27846071 tcacgaagtagttgtacagatatcatttttctatatacatacaggcaccaaactccatatcatttttttttt----gttacaaactccatatcattcaaa 27845976  T
Q  415 ctaccgtgaatacacnnnnnnnnnctctccttggacaaagtgtcataatacaacaaaaaacttacacataaaactat 491  Q
    | |||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27845975 ccaccgtgaatacactttttttt-ctctccttggacaaagtgtcataatacaacaaaaaacttacacataaaactat 27845900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 676 - 804
Target Start/End: Complemental strand, 27845721 - 27845578
Alignment:
Q  676 gtgtaatgaaaatgttgttagcataaggtcaatttcaaaattgatatgttttaagtctgatcta----------------ataaaaatgttgttaggatg 759  Q
    |||||||||||||||||||||||||||||||||||||||||  |||||||| ||||||||||||                ||||||||||||||||||||    
T  27845721 gtgtaatgaaaatgttgttagcataaggtcaatttcaaaatatatatgttt-aagtctgatctattatccgtcgtttgtaataaaaatgttgttaggatg 27845623  T
Q  760 gttcttccagccatatatgatatatactttgttactcaatgctag 804  Q
    | |||||||||||||||||||||||||||||||||||||||||||    
T  27845622 gatcttccagccatatatgatatatactttgttactcaatgctag 27845578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 170 - 232
Target Start/End: Original strand, 6515334 - 6515396
Alignment:
Q  170 tgatatttaaacaaccatttcatacaatttttggtgataattttttctctctcttttcattgg 232  Q
    |||||||| |||||||||||||||||| | ||||||| |||||||||||||||||||||||||    
T  6515334 tgatatttgaacaaccatttcatacaactgttggtgacaattttttctctctcttttcattgg 6515396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 170 - 232
Target Start/End: Complemental strand, 14206566 - 14206502
Alignment:
Q  170 tgatatttaaacaaccatttcatacaatttttggtgata--attttttctctctcttttcattgg 232  Q
    |||||||| |||||||||||||||||||||||||||| |   |||||||||||||||||||||||    
T  14206566 tgatatttgaacaaccatttcatacaatttttggtgacagttttttttctctctcttttcattgg 14206502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 170 - 232
Target Start/End: Original strand, 40223680 - 40223743
Alignment:
Q  170 tgatatttaaacaaccatttcatacaatttttggtgataa-ttttttctctctcttttcattgg 232  Q
    |||||||| |||||||||||||||||||||||||||| || |||||||| | ||||||||||||    
T  40223680 tgatatttgaacaaccatttcatacaatttttggtgacaacttttttctttgtcttttcattgg 40223743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 170 - 232
Target Start/End: Complemental strand, 3141672 - 3141609
Alignment:
Q  170 tgatatttaaacaaccatttcatacaatttttggtgataa-ttttttctctctcttttcattgg 232  Q
    |||||||| |||||||||||||||||| ||||| ||| || |||||| ||||||||||||||||    
T  3141672 tgatatttgaacaaccatttcatacaacttttgatgacaacttttttttctctcttttcattgg 3141609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 170 - 231
Target Start/End: Complemental strand, 3634670 - 3634608
Alignment:
Q  170 tgatatttaaacaaccatttcatacaatttttggtgataa-ttttttctctctcttttcattg 231  Q
    |||||||| |||||||||| ||||||| ||||| ||| || ||||||||||||||||||||||    
T  3634670 tgatatttgaacaaccattacatacaacttttgatgacaacttttttctctctcttttcattg 3634608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 232
Target Start/End: Original strand, 13613858 - 13613922
Alignment:
Q  170 tgatatttaaacaaccatttcatacaatttttggtgataatt--ttttctctctcttttcattgg 232  Q
    |||||||| ||||| |||||||||||| ||||||||| ||||  |||| ||||||||||||||||    
T  13613858 tgatatttgaacaatcatttcatacaacttttggtgacaatttcttttttctctcttttcattgg 13613922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 232
Target Start/End: Complemental strand, 21749535 - 21749471
Alignment:
Q  170 tgatatttaaacaaccatttcatacaatttttggtgataatt--ttttctctctcttttcattgg 232  Q
    |||||||| ||||||||||| ||| |||||||||||| ||||  |||| ||||||||||||||||    
T  21749535 tgatatttgaacaaccattttatataatttttggtgacaatttcttttttctctcttttcattgg 21749471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 312 - 350
Target Start/End: Original strand, 8787194 - 8787232
Alignment:
Q  312 ttatcacgaaatagttgtacaaatatcatttctctatat 350  Q
    ||||||| |||| ||||||||||||||||||||||||||    
T  8787194 ttatcactaaattgttgtacaaatatcatttctctatat 8787232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 232
Target Start/End: Original strand, 5130272 - 5130336
Alignment:
Q  170 tgatatttaaacaaccatttcatacaatttttggtgataa--ttttttctctctcttttcattgg 232  Q
    |||||||| |||||| |||||||||||||||| |||| ||  | |||| ||||||||||||||||    
T  5130272 tgatatttgaacaactatttcatacaattttttgtgacaacttcttttttctctcttttcattgg 5130336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 232
Target Start/End: Original strand, 12661841 - 12661905
Alignment:
Q  170 tgatatttaaacaaccatttcatacaatttttggtgataa--ttttttctctctcttttcattgg 232  Q
    |||||||| |||||| ||||||||||| ||||||||| ||  | |||| ||||||||||||||||    
T  12661841 tgatatttgaacaactatttcatacaacttttggtgacaacttcttttttctctcttttcattgg 12661905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 8e-20; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 170 - 232
Target Start/End: Complemental strand, 49425912 - 49425850
Alignment:
Q  170 tgatatttaaacaaccatttcatacaatttttggtgataattttttctctctcttttcattgg 232  Q
    |||||||| |||||||||||||||||| |||||||||||||||||| ||||||||||||||||    
T  49425912 tgatatttgaacaaccatttcatacaacttttggtgataattttttttctctcttttcattgg 49425850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 170 - 231
Target Start/End: Original strand, 5304725 - 5304786
Alignment:
Q  170 tgatatttaaacaaccatttcatacaatttttggtgataattttttctctctcttttcattg 231  Q
    |||||||| |||||||||||||||||||||||||||| || ||||| |||||||||||||||    
T  5304725 tgatatttgaacaaccatttcatacaatttttggtgacaactttttttctctcttttcattg 5304786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 170 - 232
Target Start/End: Original strand, 48872846 - 48872909
Alignment:
Q  170 tgatatttaaacaaccatttcatacaatttttggtgataa-ttttttctctctcttttcattgg 232  Q
    |||||||| |||||||||||||||||| ||||||||| || |||||||||||||||||||||||    
T  48872846 tgatatttgaacaaccatttcatacaacttttggtgacaacttttttctctctcttttcattgg 48872909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 170 - 232
Target Start/End: Original strand, 8391234 - 8391296
Alignment:
Q  170 tgatatttaaacaaccatttcatacaatttttggtgataattttttctctctcttttcattgg 232  Q
    |||||| | |||||||||||||||||||||||||||| |||| ||| ||||||||||||||||    
T  8391234 tgatatctgaacaaccatttcatacaatttttggtgacaattctttttctctcttttcattgg 8391296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 168 - 232
Target Start/End: Original strand, 5367934 - 5367999
Alignment:
Q  168 aatgatatttaaacaaccatttcatacaatttttggtgataa-ttttttctctctcttttcattgg 232  Q
    |||||||||| |||| ||||||||||||||||||||||| || ||||| |||||||||||||||||    
T  5367934 aatgatatttgaacatccatttcatacaatttttggtgacaactttttcctctctcttttcattgg 5367999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 170 - 232
Target Start/End: Complemental strand, 7503642 - 7503578
Alignment:
Q  170 tgatatttaaacaaccatttcatacaatttttggtgataa--ttttttctctctcttttcattgg 232  Q
    |||||||| |||||||||||||||||| ||||||||| ||  |||||| ||||||||||||||||    
T  7503642 tgatatttgaacaaccatttcatacaacttttggtgacaattttttttttctctcttttcattgg 7503578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 170 - 232
Target Start/End: Original strand, 31480029 - 31480093
Alignment:
Q  170 tgatatttaaacaaccatttcatacaatttttggtgataa--ttttttctctctcttttcattgg 232  Q
    |||||||| |||||| ||||||||||||||||||||| ||  |||||| ||||||||||||||||    
T  31480029 tgatatttgaacaactatttcatacaatttttggtgacaactttttttttctctcttttcattgg 31480093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 170 - 232
Target Start/End: Original strand, 45272052 - 45272118
Alignment:
Q  170 tgatatttaaacaaccatttcatacaatttttggtgataa----ttttttctctctcttttcattgg 232  Q
    |||||||| |||||||||||||||||| ||||||||||||    |||||| ||||||||||||||||    
T  45272052 tgatatttgaacaaccatttcatacaacttttggtgataactttttttttttctctcttttcattgg 45272118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 170 - 232
Target Start/End: Original strand, 31703375 - 31703438
Alignment:
Q  170 tgatatttaaacaaccatttcatacaatttttggtgataa-ttttttctctctcttttcattgg 232  Q
    |||||| | ||||||||||| |||||||||||||||| || |||||| ||||||||||||||||    
T  31703375 tgatatatgaacaaccattttatacaatttttggtgacaacttttttttctctcttttcattgg 31703438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 320 - 350
Target Start/End: Complemental strand, 22674737 - 22674707
Alignment:
Q  320 aaatagttgtacaaatatcatttctctatat 350  Q
    |||||||||||||||||||||||||||||||    
T  22674737 aaatagttgtacaaatatcatttctctatat 22674707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 312 - 346
Target Start/End: Original strand, 26585211 - 26585245
Alignment:
Q  312 ttatcacgaaatagttgtacaaatatcatttctct 346  Q
    ||||||| |||||||||||||||||||||||||||    
T  26585211 ttatcacaaaatagttgtacaaatatcatttctct 26585245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 215
Target Start/End: Complemental strand, 4638101 - 4638056
Alignment:
Q  170 tgatatttaaacaaccatttcatacaatttttggtgataatttttt 215  Q
    |||||||| |||||||||||||||||| ||||||||| | ||||||    
T  4638101 tgatatttgaacaaccatttcatacaacttttggtgacattttttt 4638056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 232
Target Start/End: Complemental strand, 15062022 - 15061958
Alignment:
Q  170 tgatatttaaacaaccatttcatacaatttttggtgataa--ttttttctctctcttttcattgg 232  Q
    |||||||| ||||||||||||||| || ||||||||| ||  |||||| |||||||||| |||||    
T  15062022 tgatatttgaacaaccatttcatataacttttggtgacaactttttttttctctctttttattgg 15061958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 2e-17; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 170 - 232
Target Start/End: Original strand, 51039012 - 51039074
Alignment:
Q  170 tgatatttaaacaaccatttcatacaatttttggtgataattttttctctctcttttcattgg 232  Q
    ||||||||||||||||||||||||||| ||||||||| |||||||| | ||||||||||||||    
T  51039012 tgatatttaaacaaccatttcatacaacttttggtgacaattttttttttctcttttcattgg 51039074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 170 - 232
Target Start/End: Original strand, 22257091 - 22257154
Alignment:
Q  170 tgatatttaaacaaccatttcatacaatttttggtgataa-ttttttctctctcttttcattgg 232  Q
    |||||||| |||||||||||||||||| ||||||||| || |||||||||||||||||||||||    
T  22257091 tgatatttgaacaaccatttcatacaacttttggtgacaacttttttctctctcttttcattgg 22257154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 170 - 232
Target Start/End: Complemental strand, 30973759 - 30973697
Alignment:
Q  170 tgatatttaaacaaccatttcatacaatttttggtgataattttttctctctcttttcattgg 232  Q
    |||||||| |||||| |||||||||||||||| ||||||||||||| |||||||||| |||||    
T  30973759 tgatatttgaacaactatttcatacaattttttgtgataattttttttctctctttttattgg 30973697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 170 - 232
Target Start/End: Original strand, 54036425 - 54036487
Alignment:
Q  170 tgatatttaaacaaccatttcatacaatttttggtgataattttttctctctcttttcattgg 232  Q
    |||||||| |||||||||||  ||||||||||||||| || ||||| ||||||||||||||||    
T  54036425 tgatatttgaacaaccattttgtacaatttttggtgacaactttttttctctcttttcattgg 54036487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 170 - 232
Target Start/End: Complemental strand, 36792509 - 36792445
Alignment:
Q  170 tgatatttaaacaaccatttcatacaatttttggtgataa--ttttttctctctcttttcattgg 232  Q
    |||||||| |||||||||||||||||| ||||||||| ||  | |||||||||||||||||||||    
T  36792509 tgatatttgaacaaccatttcatacaacttttggtgacaacttcttttctctctcttttcattgg 36792445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 170 - 215
Target Start/End: Complemental strand, 51318877 - 51318832
Alignment:
Q  170 tgatatttaaacaaccatttcatacaatttttggtgataatttttt 215  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||    
T  51318877 tgatatttaaacaaccatttcatataatttttggtgacaatttttt 51318832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 170 - 232
Target Start/End: Original strand, 9567585 - 9567648
Alignment:
Q  170 tgatatttaaacaaccatttcatacaatttttggtgataa-ttttttctctctcttttcattgg 232  Q
    |||||||| ||||||||||| |||||||||||||||| || |||||| | ||||||||||||||    
T  9567585 tgatatttgaacaaccattttatacaatttttggtgacaacttttttttttctcttttcattgg 9567648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 170 - 232
Target Start/End: Complemental strand, 48099986 - 48099923
Alignment:
Q  170 tgatatttaaacaaccatttcatacaatttttggtgataa-ttttttctctctcttttcattgg 232  Q
    ||||||||||||||||||||||||||| ||||||||| || |||||| | |||||||| |||||    
T  48099986 tgatatttaaacaaccatttcatacaacttttggtgacaacttttttttttctctttttattgg 48099923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 232
Target Start/End: Original strand, 1580177 - 1580241
Alignment:
Q  170 tgatatttaaacaaccatttcatacaatttttggtgataa--ttttttctctctcttttcattgg 232  Q
    |||||||| |||||||||||||||||| |||| |||| ||  |||||| ||||||||||||||||    
T  1580177 tgatatttgaacaaccatttcatacaactttttgtgacaactttttttttctctcttttcattgg 1580241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 232
Target Start/End: Original strand, 6953282 - 6953346
Alignment:
Q  170 tgatatttaaacaaccatttcatacaatttttggtgataa--ttttttctctctcttttcattgg 232  Q
    |||||||| |||||||||||| ||||| ||||||||| ||  | |||||||||||||||||||||    
T  6953282 tgatatttgaacaaccatttcttacaacttttggtgacaacttcttttctctctcttttcattgg 6953346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 232
Target Start/End: Complemental strand, 31240825 - 31240761
Alignment:
Q  170 tgatatttaaacaaccatttcatacaatttttggtgataa--ttttttctctctcttttcattgg 232  Q
    |||||||| |||||||||||||||||| ||||||||| ||  | |||| ||||||||||||||||    
T  31240825 tgatatttgaacaaccatttcatacaacttttggtgacaacttcttttttctctcttttcattgg 31240761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 231
Target Start/End: Complemental strand, 41953005 - 41952942
Alignment:
Q  170 tgatatttaaacaaccatttcatacaatttttggtgataa--ttttttctctctcttttcattg 231  Q
    |||||||| ||||||||||||||| || ||||||||| ||  |||||| |||||||||||||||    
T  41953005 tgatatttgaacaaccatttcatataacttttggtgacaactttttttttctctcttttcattg 41952942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 315 - 349
Target Start/End: Complemental strand, 35017183 - 35017149
Alignment:
Q  315 tcacgaaatagttgtacaaatatcatttctctata 349  Q
    |||| ||||||||||||||||||||||||||||||    
T  35017183 tcacaaaatagttgtacaaatatcatttctctata 35017149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 320 - 350
Target Start/End: Original strand, 40629386 - 40629416
Alignment:
Q  320 aaatagttgtacaaatatcatttctctatat 350  Q
    |||||||||||||||||||||||||||||||    
T  40629386 aaatagttgtacaaatatcatttctctatat 40629416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 172 - 229
Target Start/End: Original strand, 43168613 - 43168671
Alignment:
Q  172 atatttaaacaaccatttcatacaatttttggtgataa-ttttttctctctcttttcat 229  Q
    |||||| ||||||||||||||||| |||||||||| || |||||| | |||||||||||    
T  43168613 atatttgaacaaccatttcatacagtttttggtgacaacttttttttttctcttttcat 43168671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 215
Target Start/End: Original strand, 3664665 - 3664706
Alignment:
Q  174 atttaaacaaccatttcatacaatttttggtgataatttttt 215  Q
    ||||||||||| |||||||||||||||| |||| ||||||||    
T  3664665 atttaaacaacaatttcatacaattttttgtgacaatttttt 3664706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 232
Target Start/End: Original strand, 39241197 - 39241261
Alignment:
Q  170 tgatatttaaacaaccatttcatacaatttttggtgataa--ttttttctctctcttttcattgg 232  Q
    |||||||| ||||||||||| | |||| ||||||||| ||  | |||||||||||||||||||||    
T  39241197 tgatattttaacaaccatttgagacaacttttggtgacaacttattttctctctcttttcattgg 39241261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 232
Target Start/End: Original strand, 48372120 - 48372184
Alignment:
Q  170 tgatatttaaacaaccatttcatacaatttttggtgataa--ttttttctctctcttttcattgg 232  Q
    |||||||| |||||| |||||||||||||||| |||| ||  | |||| ||||||||||||||||    
T  48372120 tgatatttgaacaactatttcatacaatttttagtgacaacttcttttttctctcttttcattgg 48372184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 8e-17; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 170 - 231
Target Start/End: Complemental strand, 7428604 - 7428543
Alignment:
Q  170 tgatatttaaacaaccatttcatacaatttttggtgataattttttctctctcttttcattg 231  Q
    |||||||| |||||||||||||||||||||||||||| || ||||| |||||||||||||||    
T  7428604 tgatatttgaacaaccatttcatacaatttttggtgacaactttttttctctcttttcattg 7428543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 170 - 232
Target Start/End: Original strand, 26321592 - 26321655
Alignment:
Q  170 tgatatttaaacaaccatttcatacaatttttggtgataa-ttttttctctctcttttcattgg 232  Q
    |||||||| ||||| |||||||||||| |||||||||||| |||||| ||||||||||||||||    
T  26321592 tgatatttgaacaatcatttcatacaacttttggtgataacttttttttctctcttttcattgg 26321655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 168 - 232
Target Start/End: Complemental strand, 16577645 - 16577580
Alignment:
Q  168 aatgatatttaaacaaccatttcatacaatttttggtgataatttt-ttctctctcttttcattgg 232  Q
    |||||||||| || |||||||||||||||||||| |||| |||||| || ||||||||||||||||    
T  16577645 aatgatatttgaataaccatttcatacaattttttgtgacaattttcttatctctcttttcattgg 16577580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 170 - 232
Target Start/End: Original strand, 45515494 - 45515557
Alignment:
Q  170 tgatatttaaacaaccatttcatacaatttttggtgataa-ttttttctctctcttttcattgg 232  Q
    |||||||| |||||||||||||||||| ||||||||| || || ||| ||||||||||||||||    
T  45515494 tgatatttgaacaaccatttcatacaacttttggtgacaacttctttttctctcttttcattgg 45515557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 232
Target Start/End: Complemental strand, 19913961 - 19913897
Alignment:
Q  170 tgatatttaaacaaccatttcatacaatttttggtgataa--ttttttctctctcttttcattgg 232  Q
    |||||||| |||||||||||||||||| ||| ||||| ||  |||||| ||||||||||||||||    
T  19913961 tgatatttgaacaaccatttcatacaactttcggtgacaactttttttttctctcttttcattgg 19913897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 312 - 348
Target Start/End: Complemental strand, 10288183 - 10288147
Alignment:
Q  312 ttatcacgaaatagttgtacaaatatcatttctctat 348  Q
    ||||||| |||||||||||||||||||||||||||||    
T  10288183 ttatcacaaaatagttgtacaaatatcatttctctat 10288147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 312 - 347
Target Start/End: Original strand, 14891116 - 14891151
Alignment:
Q  312 ttatcacgaaatagttgtacaaatatcatttctcta 347  Q
    ||||||| ||||||||||||||||||||||||||||    
T  14891116 ttatcacaaaatagttgtacaaatatcatttctcta 14891151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 170 - 231
Target Start/End: Original strand, 9202411 - 9202473
Alignment:
Q  170 tgatatttaaacaaccatttcatacaatttttggtgataa-ttttttctctctcttttcattg 231  Q
    |||||||| |||||||||||||||||||||||  ||| || |||||| ||||||||| |||||    
T  9202411 tgatatttgaacaaccatttcatacaattttttatgacaatttttttttctctctttccattg 9202473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 312 - 345
Target Start/End: Complemental strand, 3091774 - 3091741
Alignment:
Q  312 ttatcacgaaatagttgtacaaatatcatttctc 345  Q
    ||||||| ||||||||||||||||||||||||||    
T  3091774 ttatcacaaaatagttgtacaaatatcatttctc 3091741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 220
Target Start/End: Complemental strand, 44287512 - 44287456
Alignment:
Q  163 tgagaaatgatatttaaacaaccatttcatacaatttttggtgataattttttctctc 220  Q
    ||||||||||||||| |||||| ||||  ||||| |||| ||||||||||||||||||    
T  44287512 tgagaaatgatatttgaacaactattttttacaactttt-gtgataattttttctctc 44287456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 163 - 232
Target Start/End: Complemental strand, 19426763 - 19426693
Alignment:
Q  163 tgagaaatgatatttaaacaaccatttcatacaatttttggtgataa-ttttttctctctcttttcattgg 232  Q
    |||||| |||||||| |||||||||||||||||| ||||||||| || |||||| ||||||||||||||||    
T  19426763 tgagaagtgatatttgaacaaccatttcatacaacttttggtgacaacttttttttctctcttttcattgg 19426693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 170 - 232
Target Start/End: Original strand, 22330526 - 22330589
Alignment:
Q  170 tgatatttaaacaaccatttcatacaatttttggtgataa-ttttttctctctcttttcattgg 232  Q
    |||||||| ||||||||||||||| |||||||||||| || |||||| ||||||||||||||||    
T  22330526 tgatatttgaacaaccatttcatataatttttggtgacaacttttttttctctcttttcattgg 22330589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 170 - 232
Target Start/End: Original strand, 47424880 - 47424943
Alignment:
Q  170 tgatatttaaacaaccatttcatacaatttttggtgataattttttct-ctctcttttcattgg 232  Q
    |||||||| |||||||||||||||||| ||||||||| |||||||| | ||||||||| |||||    
T  47424880 tgatatttgaacaaccatttcatacaacttttggtgacaattttttttcctctctttttattgg 47424943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 170 - 231
Target Start/End: Original strand, 7390669 - 7390731
Alignment:
Q  170 tgatatttaaacaaccatttcatacaatttttggtgataa-ttttttctctctcttttcattg 231  Q
    |||||||| |||||||||||||||||||||||||||| || || ||| |||||||||| ||||    
T  7390669 tgatatttgaacaaccatttcatacaatttttggtgacaacttctttttctctctttttattg 7390731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 170 - 232
Target Start/End: Complemental strand, 7807231 - 7807169
Alignment:
Q  170 tgatatttaaacaaccatttcatacaatttttggtgataattttttctctctcttttcattgg 232  Q
    |||||||| |||||||||||||||||| ||||| ||| || || || ||||||||||||||||    
T  7807231 tgatatttgaacaaccatttcatacaacttttgatgacaacttcttttctctcttttcattgg 7807169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 232
Target Start/End: Complemental strand, 28597056 - 28596990
Alignment:
Q  170 tgatatttaaacaaccatttcatacaatttttggtgataa----ttttttctctctcttttcattgg 232  Q
    |||||||| |||||||||||||||||| ||||||||| ||    |||||| ||||||||||||||||    
T  28597056 tgatatttgaacaaccatttcatacaacttttggtgacaaattcttttttttctctcttttcattgg 28596990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 206
Target Start/End: Complemental strand, 40842591 - 40842547
Alignment:
Q  162 atgagaaatgatatttaaacaaccatttcatacaatttttggtga 206  Q
    ||||| |||||||||| |||||||||||||||||| |||||||||    
T  40842591 atgagtaatgatatttgaacaaccatttcatacaacttttggtga 40842547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 221
Target Start/End: Original strand, 32154445 - 32154496
Alignment:
Q  170 tgatatttaaacaaccatttcatacaatttttggtgataattttttctctct 221  Q
    |||||||| |||||||||||||||||| ||||||||| || ||||| |||||    
T  32154445 tgatatttgaacaaccatttcatacaacttttggtgacaactttttttctct 32154496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 170 - 232
Target Start/End: Complemental strand, 36990216 - 36990154
Alignment:
Q  170 tgatatttaaacaaccatttcatacaatttttggtgataattttttctctctcttttcattgg 232  Q
    |||||||| ||||||||||||||| ||||||| |||| || ||||| ||||| |||| |||||    
T  36990216 tgatatttgaacaaccatttcatataattttttgtgacaaatttttttctctttttttattgg 36990154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 215
Target Start/End: Complemental strand, 27778238 - 27778193
Alignment:
Q  170 tgatatttaaacaaccatttcatacaatttttggtgataatttttt 215  Q
    |||||||| ||||||||||||||| || ||||||||| ||||||||    
T  27778238 tgatatttgaacaaccatttcatataacttttggtgacaatttttt 27778193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 220
Target Start/End: Original strand, 37352110 - 37352166
Alignment:
Q  164 gagaaatgatatttaaacaaccatttcat-acaatttttggtgataattttttctctc 220  Q
    |||||||||||||| |||||||||||  | ||||||||| ||||||||||||||||||    
T  37352110 gagaaatgatatttgaacaaccattttttgacaattttt-gtgataattttttctctc 37352166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 170 - 232
Target Start/End: Complemental strand, 25166801 - 25166740
Alignment:
Q  170 tgatatttaaacaaccatttcatacaatttttggtgataattttttctctctcttttcattgg 232  Q
    |||||||||||||||||||||||||||||||| |||| || ||||| ||||||||||||||||    
T  25166801 tgatatttaaacaaccatttcatacaattttttgtgacaacttttt-tctctcttttcattgg 25166740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 232
Target Start/End: Complemental strand, 32149650 - 32149602
Alignment:
Q  184 ccatttcatacaatttttggtgataattttttctctctcttttcattgg 232  Q
    |||||||||| ||||||||||||||||||||| | ||| ||||||||||    
T  32149650 ccatttcatataatttttggtgataattttttttttcttttttcattgg 32149602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 162 - 220
Target Start/End: Original strand, 276989 - 277046
Alignment:
Q  162 atgagaaatgatatttaaacaaccatttcatacaatttttggtgataattttttctctc 220  Q
    |||||||||||||||| |||||| ||||  || ||||||| ||||||||||||||||||    
T  276989 atgagaaatgatatttcaacaactattttttataattttt-gtgataattttttctctc 277046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 232
Target Start/End: Complemental strand, 9954725 - 9954661
Alignment:
Q  170 tgatatttaaacaaccatttcatacaatttttggtgataattttttc--tctctcttttcattgg 232  Q
    |||||||| ||||||||||| |||||| ||||||||| || || |||  ||||||||||||||||    
T  9954725 tgatatttgaacaaccatttaatacaacttttggtgacaacttcttctttctctcttttcattgg 9954661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 170 - 232
Target Start/End: Original strand, 43169649 - 43169711
Alignment:
Q  170 tgatatttaaacaaccatttcatacaatttttggtgataattttttctctctcttttcattgg 232  Q
    |||||||| |||||||||||||||||| ||||||||| || ||||| ||||||||||||||||    
T  43169649 tgatatttgaacaaccatttcatacaacttttggtgacaactttttttctctcttttcattgg 43169711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 170 - 232
Target Start/End: Original strand, 44365186 - 44365250
Alignment:
Q  170 tgatatttaaacaaccatttcatacaatttttggtgataa--ttttttctctctcttttcattgg 232  Q
    |||||||| ||||||||||| |||||||||||||||| ||  | |||||||||||||||||||||    
T  44365186 tgatatttgaacaaccattttatacaatttttggtgacaacttcttttctctctcttttcattgg 44365250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 170 - 232
Target Start/End: Complemental strand, 51650533 - 51650467
Alignment:
Q  170 tgatatttaaacaaccatttcatacaatttttggtgataa----ttttttctctctcttttcattgg 232  Q
    |||||||| |||||||||||||||||| ||||||||| ||    |||||||||||||||||||||||    
T  51650533 tgatatttgaacaaccatttcatacaacttttggtgacaacttcttttttctctctcttttcattgg 51650467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 232
Target Start/End: Original strand, 31249216 - 31249280
Alignment:
Q  170 tgatatttaaacaaccatttcatacaatttttggtgataa--ttttttctctctcttttcattgg 232  Q
    |||||||| |||||||||||||||||| ||||||||| ||  |||||| | ||||||||||||||    
T  31249216 tgatatttgaacaaccatttcatacaacttttggtgacaactttttttttttctcttttcattgg 31249280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 228
Target Start/End: Complemental strand, 25828849 - 25828791
Alignment:
Q  170 tgatatttaaacaaccatttcatacaatttttggtgataa-ttttttctctctcttttca 228  Q
    |||||||| |||||||||| ||||||||||||||||||||  ||||| ||||||||||||    
T  25828849 tgatatttgaacaaccatt-catacaatttttggtgataacctttttttctctcttttca 25828791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 232
Target Start/End: Original strand, 32687852 - 32687918
Alignment:
Q  168 aatgatatttaaacaaccatttcatacaatttttggtgataa--ttttttctctctcttttcattgg 232  Q
    |||||||||| |||||| |||| |||||| ||||||||||||  | |||| ||||||||||||||||    
T  32687852 aatgatatttgaacaactatttgatacaacttttggtgataacttcttttttctctcttttcattgg 32687918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 168 - 206
Target Start/End: Original strand, 36318173 - 36318211
Alignment:
Q  168 aatgatatttaaacaaccatttcatacaatttttggtga 206  Q
    |||||||||| ||||||||||||||| ||||||||||||    
T  36318173 aatgatatttgaacaaccatttcatataatttttggtga 36318211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 168 - 206
Target Start/End: Complemental strand, 46003885 - 46003847
Alignment:
Q  168 aatgatatttaaacaaccatttcatacaatttttggtga 206  Q
    |||||||||| |||||||||||||||||| |||||||||    
T  46003885 aatgatatttgaacaaccatttcatacaacttttggtga 46003847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 312 - 345
Target Start/End: Complemental strand, 1295365 - 1295332
Alignment:
Q  312 ttatcacgaaatagttgtacaaatatcatttctc 345  Q
    ||||||| ||||||||||||||||||||||||||    
T  1295365 ttatcacaaaatagttgtacaaatatcatttctc 1295332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 232
Target Start/End: Complemental strand, 6126631 - 6126567
Alignment:
Q  170 tgatatttaaacaaccatttcatacaatttttggtgataa--ttttttctctctcttttcattgg 232  Q
    |||||||| |||||||||||||||||| ||||||| | ||  | |||| ||||||||||||||||    
T  6126631 tgatatttgaacaaccatttcatacaacttttggttacaacttcttttttctctcttttcattgg 6126567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 173 - 232
Target Start/End: Original strand, 28570306 - 28570365
Alignment:
Q  173 tatttaaacaaccatttcatacaatttttggtgataattttttctctctcttttcattgg 232  Q
    ||||| |||||||||||||||||| ||||||||| ||||| || ||||||||||||||||    
T  28570306 tatttgaacaaccatttcatacaacttttggtgacaatttcttttctctcttttcattgg 28570365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 173 - 232
Target Start/End: Original strand, 28577899 - 28577958
Alignment:
Q  173 tatttaaacaaccatttcatacaatttttggtgataattttttctctctcttttcattgg 232  Q
    ||||| |||||||||||||||||| ||||||||| ||||| || ||||||||||||||||    
T  28577899 tatttgaacaaccatttcatacaacttttggtgacaatttcttttctctcttttcattgg 28577958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 170 - 232
Target Start/End: Complemental strand, 45101572 - 45101509
Alignment:
Q  170 tgatatttaaacaaccatttcatacaatttttggtgataa-ttttttctctctcttttcattgg 232  Q
    |||||||| |||||||||||||||||| ||||||||| || |||||| ||||||||||||||||    
T  45101572 tgatatttgaacaaccatttcatacaacttttggtgacaacttttttttctctcttttcattgg 45101509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 170 - 232
Target Start/End: Complemental strand, 9963862 - 9963799
Alignment:
Q  170 tgatatttaaacaaccatttcatacaatttttggtgataa-ttttttctctctcttttcattgg 232  Q
    |||||||| ||||||||||| |||||| ||||| |||||| |||||| ||||||||||||||||    
T  9963862 tgatatttgaacaaccattttatacaacttttgatgataacttttttttctctcttttcattgg 9963799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 170 - 232
Target Start/End: Original strand, 30925549 - 30925612
Alignment:
Q  170 tgatatttaaacaaccatttcatacaatttttggtgataa-ttttttctctctcttttcattgg 232  Q
    |||||||| ||||||||||| |||||| ||||||||| || |||||| ||||||||||||||||    
T  30925549 tgatatttgaacaaccattttatacaacttttggtgacaacttttttttctctcttttcattgg 30925612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 232
Target Start/End: Complemental strand, 34474129 - 34474062
Alignment:
Q  168 aatgatatttaaacaaccatttcatacaatttttggtgataa---ttttttctctctcttttcattgg 232  Q
    |||||||||| |||||||||||||||||| ||||||||| ||    ||||||||||| ||||||||||    
T  34474129 aatgatatttgaacaaccatttcatacaacttttggtgacaacttctttttctctcttttttcattgg 34474062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 232
Target Start/End: Original strand, 37101580 - 37101644
Alignment:
Q  170 tgatatttaaacaaccatttcatacaatttttggtgataa--ttttttctctctcttttcattgg 232  Q
    |||||||| ||||||||||||||||||||||| |||| ||  | |||| ||||||||||||||||    
T  37101580 tgatatttgaacaaccatttcatacaatttttcgtgacaacttcttttttctctcttttcattgg 37101644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 232
Target Start/End: Complemental strand, 20473955 - 20473892
Alignment:
Q  170 tgatatttaaacaaccatttcatacaatttttggtgataatt-ttttctctctcttttcattgg 232  Q
    |||||||| |||||| |||||||| || |||| |||| |||| |||||||||||||||||||||    
T  20473955 tgatatttgaacaactatttcatataacttttagtgacaattattttctctctcttttcattgg 20473892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 221
Target Start/End: Complemental strand, 41703492 - 41703441
Alignment:
Q  170 tgatatttaaacaaccatttcatacaatttttggtgataattttttctctct 221  Q
    |||||||| |||| |||||| ||| ||||||||||||||||||||| |||||    
T  41703492 tgatatttgaacacccattttatataatttttggtgataattttttttctct 41703441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 168 - 206
Target Start/End: Complemental strand, 32175134 - 32175096
Alignment:
Q  168 aatgatatttaaacaaccatttcatacaatttttggtga 206  Q
    |||||||||| |||||||||||||||||| |||||||||    
T  32175134 aatgatatttgaacaaccatttcatacaacttttggtga 32175096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 232
Target Start/End: Complemental strand, 3650290 - 3650226
Alignment:
Q  170 tgatatttaaacaaccatttcatacaatttttggtgataatt--ttttctctctcttttcattgg 232  Q
    |||||||| ||||||||||| | | || ||||||||| ||||  |||||||||||||||||||||    
T  3650290 tgatattttaacaaccatttgagataacttttggtgacaatttattttctctctcttttcattgg 3650226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 232
Target Start/End: Original strand, 14029137 - 14029201
Alignment:
Q  170 tgatatttaaacaaccatttcatacaatttttggtgataa--ttttttctctctcttttcattgg 232  Q
    |||||||| ||||||||||| | |||| ||||||||| ||  | |||||||||||||||||||||    
T  14029137 tgatattttaacaaccatttgagacaacttttggtgacaacttattttctctctcttttcattgg 14029201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 232
Target Start/End: Original strand, 21648825 - 21648889
Alignment:
Q  170 tgatatttaaacaaccatttcatacaatttttggtgataa--ttttttctctctcttttcattgg 232  Q
    |||||||| ||||||||||| | |||| ||||||||| ||  | |||||||||||||||||||||    
T  21648825 tgatattttaacaaccatttgagacaacttttggtgacaacttattttctctctcttttcattgg 21648889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 220
Target Start/End: Complemental strand, 31249596 - 31249540
Alignment:
Q  163 tgagaaatgatatttaaacaaccatttcatacaatttttggtgataattttttctctc 220  Q
    ||||||||||||||| |||||||||||  ||||| |||| |||| |||||||||||||    
T  31249596 tgagaaatgatatttgaacaaccattttttacaactttt-gtgacaattttttctctc 31249540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 232
Target Start/End: Original strand, 42543375 - 42543439
Alignment:
Q  170 tgatatttaaacaaccatttcatacaatttttggtgataa--ttttttctctctcttttcattgg 232  Q
    ||||| || |||||||||||||||||| ||||||||| ||  | |||| ||||||||||||||||    
T  42543375 tgataattgaacaaccatttcatacaacttttggtgacaacttcttttttctctcttttcattgg 42543439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 215
Target Start/End: Original strand, 42768016 - 42768061
Alignment:
Q  170 tgatatttaaacaaccatttcatacaatttttggtgataatttttt 215  Q
    |||||||| ||||| ||||||||||||||||| |||| ||||||||    
T  42768016 tgatatttgaacaaacatttcatacaatttttagtgacaatttttt 42768061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 170 - 232
Target Start/End: Complemental strand, 6993 - 6930
Alignment:
Q  170 tgatatttaaacaaccatttcatacaatttttggtgataa-ttttttctctctcttttcattgg 232  Q
    |||||||| ||||||||||| |||||| |||||| || || |||||||||||||||||||||||    
T  6993 tgatatttgaacaaccattttatacaacttttggcgacaacttttttctctctcttttcattgg 6930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 215
Target Start/End: Complemental strand, 396038 - 395993
Alignment:
Q  170 tgatatttaaacaaccatttcatacaatttttggtgataatttttt 215  Q
    |||||||| ||||||||||||||||||||||| |||| ||||||||    
T  396038 tgatatttgaacaaccatttcatacaattttttgtgacaatttttt 395993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 170 - 212
Target Start/End: Complemental strand, 27516 - 27474
Alignment:
Q  170 tgatatttaaacaaccatttcatacaatttttggtgataattt 212  Q
    |||||||| ||||||||||||||||||||||| |||| |||||    
T  27516 tgatatttgaacaaccatttcatacaatttttagtgacaattt 27474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University