View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4622-Insertion-6 (Length: 745)

Name: NF4622-Insertion-6
Description: NF4622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4622-Insertion-6
NF4622-Insertion-6
[»] chr8 (1 HSPs)
chr8 (10-745)||(2366637-2367373)


Alignment Details
Target: chr8 (Bit Score: 640; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 640; E-Value: 0
Query Start/End: Original strand, 10 - 745
Target Start/End: Original strand, 2366637 - 2367373
Alignment:
Q  10 atggaatggaaaaacggtacaattcacatgagaaaagtacacaggctcttaaaatgcttaccaatgttttctctcttgtgaccagatattaataatttct 109  Q
    ||||||||||||||| |||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  2366637 atggaatggaaaaacagtacaaatcacatgagaaaagtacacatgctcttaaaatgcttaccaatgttttctctcttgtgaccagatattaataatttat 2366736  T
Q  110 ctattttttccttatagnnnnnnn-ttgaaatttgtcacttacgaaagaaaaaacttataaatttgtaagtgttattaagaagttacattgtaatgtaaa 208  Q
    |||||||||||||||||        || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2366737 ctattttttccttatagaaaaaaaatttaaatttgtcacttacgaaagaaaaaacttataaatttgtaagtgttattaagaagttacattgtaatgtaaa 2366836  T
Q  209 gttcttatgttgcacatctctttcctagagggtaaggtctatagctttgtaatcagatattgtgatttttcactcctattaagctctttctcagaatcca 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||    
T  2366837 gttcttatgttgcacatctctttcctagagggtaaggtctatagctttgtaatcagatattgtgattattcactcctattaagctctttctcataatcca 2366936  T
Q  309 ataaagaaatttatcttagaaaaataagcctctcagattaatatgaaatttctctcctgatcagtcactactttaactagaatatatctgcctagactaa 408  Q
    ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2366937 ataaagaaatttatcttagaaaaataagcctctcagattaccatgaaatttctctcctgatcagtcactactttaactagaatatatctgcctagactaa 2367036  T
Q  409 cgttggcttagtttgtaagaagttggctcgcccataaggtcttggggatcaacttccattaccaatgcaaagatctctttggtgggtgatctataagtac 508  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||    
T  2367037 cgttggcttagtttgtaagaagttggctcgcccataaggtcatggggatcaaattccattaccaatgcaaagatctctttggtgagtgatctataagtac 2367136  T
Q  509 ctcatttccgtttcaccttcaaacatgtcacaccgcgctccgaggtattgtcctctttaggtgtaagctcttcacggttttaacgaaagacgaatcgttg 608  Q
    ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2367137 ctcttttccgtttcaccttcaaacatgtcacaccgcgttccgaggtattgtcctctttaggtgtaagctcttcacggttttaacgaaagacgaatcgttg 2367236  T
Q  609 tattgtatataaactacccttggttaatgttccattccactcacaagtacaccacatcatcttctcaggtattgtccactttgggtcgttgagtgacctt 708  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  2367237 tattgtatataaactaccgttggttaatgttccattccactcacaagtacaccacatcatcttctcaggtattgtccactttgggttgttgagtgacctt 2367336  T
Q  709 tcacagttttgtctgttataaaaagtgtctatttgga 745  Q
    ||||||||||||||||||||||||||||||| |||||    
T  2367337 tcacagttttgtctgttataaaaagtgtctagttgga 2367373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University