View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4622-Insertion-7 (Length: 659)

Name: NF4622-Insertion-7
Description: NF4622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4622-Insertion-7
NF4622-Insertion-7
[»] chr1 (5 HSPs)
chr1 (8-659)||(7554367-7555019)
chr1 (469-613)||(29658926-29659070)
chr1 (339-404)||(19468333-19468398)
chr1 (469-610)||(29718953-29719094)
chr1 (340-482)||(9581193-9581335)
[»] chr6 (20 HSPs)
chr6 (11-477)||(9411482-9411948)
chr6 (472-634)||(9411259-9411421)
chr6 (472-604)||(6585270-6585402)
chr6 (493-633)||(6402765-6402905)
chr6 (485-632)||(7994228-7994375)
chr6 (472-633)||(14820598-14820759)
chr6 (508-611)||(6415893-6415996)
chr6 (476-610)||(19632367-19632501)
chr6 (485-610)||(6603248-6603373)
chr6 (486-611)||(11936322-11936447)
chr6 (486-611)||(11948302-11948427)
chr6 (472-611)||(14818309-14818448)
chr6 (472-611)||(6432088-6432227)
chr6 (493-611)||(7119084-7119202)
chr6 (568-633)||(6394769-6394834)
chr6 (364-480)||(7119284-7119397)
chr6 (493-611)||(7131562-7131680)
chr6 (364-480)||(7131762-7131875)
chr6 (95-151)||(6588601-6588657)
chr6 (362-480)||(10579593-10579708)
[»] chr5 (6 HSPs)
chr5 (472-613)||(41901568-41901709)
chr5 (493-632)||(32267381-32267520)
chr5 (472-602)||(41889587-41889717)
chr5 (367-482)||(32267597-32267712)
chr5 (362-482)||(41901392-41901512)
chr5 (569-610)||(17205527-17205568)
[»] chr8 (6 HSPs)
chr8 (472-611)||(27922435-27922574)
chr8 (472-611)||(18315306-18315445)
chr8 (494-552)||(32151287-32151345)
chr8 (372-479)||(34936027-34936134)
chr8 (493-611)||(17636455-17636572)
chr8 (506-611)||(28246360-28246465)
[»] chr3 (7 HSPs)
chr3 (493-632)||(51113835-51113974)
chr3 (472-611)||(13470765-13470904)
chr3 (37-161)||(513939-514063)
chr3 (472-611)||(51120926-51121065)
chr3 (49-156)||(51763672-51763779)
chr3 (493-611)||(51764494-51764612)
chr3 (382-476)||(1657378-1657472)
[»] chr2 (3 HSPs)
chr2 (493-633)||(45245139-45245279)
chr2 (485-611)||(1037710-1037836)
chr2 (275-450)||(32785542-32785717)
[»] chr4 (24 HSPs)
chr4 (497-611)||(546840-546954)
chr4 (485-611)||(55908774-55908900)
chr4 (11-162)||(8186594-8186745)
chr4 (37-156)||(21833568-21833687)
chr4 (486-552)||(1524533-1524599)
chr4 (472-633)||(1548457-1548618)
chr4 (472-656)||(1513440-1513621)
chr4 (472-651)||(8184063-8184242)
chr4 (38-156)||(1601179-1601300)
chr4 (472-610)||(640843-640981)
chr4 (472-613)||(7307785-7307926)
chr4 (362-480)||(1600546-1600664)
chr4 (494-611)||(558425-558542)
chr4 (126-159)||(7225501-7225534)
chr4 (562-611)||(53761892-53761941)
chr4 (533-605)||(1489455-1489527)
chr4 (126-158)||(8183638-8183670)
chr4 (472-551)||(553466-553545)
chr4 (472-555)||(570334-570417)
chr4 (37-156)||(7308230-7308349)
chr4 (472-611)||(12121490-12121629)
chr4 (569-611)||(553406-553448)
chr4 (362-436)||(8186945-8187019)
chr4 (569-633)||(1524613-1524677)
[»] scaffold0295 (1 HSPs)
scaffold0295 (485-611)||(670-796)
[»] chr7 (2 HSPs)
chr7 (497-634)||(15092209-15092346)
chr7 (497-610)||(10614521-10614634)
[»] scaffold0014 (1 HSPs)
scaffold0014 (424-480)||(88943-88999)


Alignment Details
Target: chr1 (Bit Score: 613; Significance: 0; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 613; E-Value: 0
Query Start/End: Original strand, 8 - 659
Target Start/End: Complemental strand, 7555019 - 7554367
Alignment:
Q  8 attactacatcaacgacatatcacttgttcacttgtttaagaactgcaagcttctccaagaggttatcatgtttgagtgtgatggcataaccaaagcagg 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  7555019 attactacatcaacgacatatcacttgttcacttgtttaagaactgcaagcttctccaagaggttatcatgtttgagtgtgatggcataaccaaagctgg 7554920  T
Q  108 catttttt-cagctctccatgagagaccaacattgaggtctttatcctttaccgatcacgaatcaagaaacttcgcaacgctgtttgcactcattaagaa 206  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  7554919 catttttttcagctctccatgagagaccaacattgaggtctttatcctttaccgatcacgaatcaagaaacttcgcaacgctgtttgcactcgttaagaa 7554820  T
Q  207 ctatccttcacttagtgaggttaaactggaatacacatatttcacaaaaaataatatggagaagtcttattctttgatggattttgttgtaagccccaac 306  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  7554819 ctatccttcacttagtgagattaaactggaatacacatatttcacaaaaaataatatggagaattcttattctttgatggattttgttgtaagccccaac 7554720  T
Q  307 ttaaagtctctatgtttgggtcacagtttacagttaagagatgaaaacatcaaggtgttagcttccatctttcccaatttagagctgcttgatttgaaaa 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||    
T  7554719 ttaaagtctctatgtttgggtcacagtttacagttaagagatgaaaacatcaaagtcttagcttccatctttcccaatttagagctgcttgatttgaaaa 7554620  T
Q  407 attgctatgacatatctaaagaaggtatttttcacattttaagaagatgtcataacattagacatttgaacttatcgtatacaagtgttgatgatgaagc 506  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  7554619 attgctatgacatatctaaagaaggtatttttcacattttaagaagatgtcataacattagacatttgaacttatcatatacaagtgttgatgatgaagc 7554520  T
Q  507 actctatatgatctcaaagagttgtggtggacttttacaactgttacttaaaggatgtgataatgtcacagaaaagggagtgaagcatgtggtagaaaac 606  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7554519 actctatatgatctcaaagagttgtggtggacttttacaactgttactgaaaggatgtgataatgtcacagaaaagggagtgaagcatgtggtagaaaac 7554420  T
Q  607 tgcacgctactcaaagagattaatttgcagaattgtggtaaagtgaatggcaa 659  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7554419 tgcacgctactcaaagagattaatttgcagaattgtggtaaagtgaatggcaa 7554367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 469 - 613
Target Start/End: Original strand, 29658926 - 29659070
Alignment:
Q  469 catttgaacttatcgtatacaagtgttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttacttaaaggatgtgata 568  Q
    ||||||||||| || ||||| |  ||||||||| |||||||| |||| || |||| ||||||| |||| ||||| ||| |||||||  || | |||   |    
T  29658926 catttgaacttgtcatataccaaagttgatgataaagcactccatatcatatcaacgagttgttgtggccttttgcaattgttactggaatgttgtacga 29659025  T
Q  569 atgtcacagaaaagggagtgaagcatgtggtagaaaactgcacgc 613  Q
    |||||||||| || ||||| || ||||||||  ||||||||||||    
T  29659026 atgtcacagagaatggagtaaaacatgtggttcaaaactgcacgc 29659070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 339 - 404
Target Start/End: Original strand, 19468333 - 19468398
Alignment:
Q  339 gttaagagatgaaaacatcaaggtgttagcttccatctttcccaatttagagctgcttgatttgaa 404  Q
    |||||| |||||||||||||   |||| |||||||| |||||||||||  ||||||||||||||||    
T  19468333 gttaagcgatgaaaacatcataatgtttgcttccatttttcccaatttgcagctgcttgatttgaa 19468398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 469 - 610
Target Start/End: Original strand, 29718953 - 29719094
Alignment:
Q  469 catttgaacttatcgtatacaagtgttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttacttaaaggatgtgata 568  Q
    ||||||||||| || ||||| |  ||||||||| || ||||| |||| || |||| ||||||| |||| ||||| ||| |||||||  || | |||   |    
T  29718953 catttgaacttgtcatataccaacgttgatgataaatcactccatatcatatcaacgagttgttgtggccttttgcaattgttactggaaagttgtatga 29719052  T
Q  569 atgtcacagaaaagggagtgaagcatgtggtagaaaactgca 610  Q
    |||||||||| || |||||||| ||||||||  |||||||||    
T  29719053 atgtcacagagaatggagtgaaacatgtggttcaaaactgca 29719094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 340 - 482
Target Start/End: Complemental strand, 9581335 - 9581193
Alignment:
Q  340 ttaagagatgaaaacatcaaggtgttagcttccatctttcccaatttagagctgcttgatttgaaaaattgctatgacatatctaaagaaggtatttttc 439  Q
    ||||||||| |||||||||   |||| ||||| || || ||||||||  ||||||||||| ||    |||||| | |||||||||||  |||||||| ||    
T  9581335 ttaagagataaaaacatcataatgtttgcttcaattttccccaatttgcagctgcttgatctgcgccattgctgtaacatatctaaaagaggtatttgtc 9581236  T
Q  440 acattttaagaagatgtcataacattagacatttgaacttatc 482  Q
    |  |||||| |||||||  | | ||||||||||||||| ||||    
T  9581235 aagttttaaaaagatgttgtcagattagacatttgaacatatc 9581193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 5e-36; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 11 - 477
Target Start/End: Complemental strand, 9411948 - 9411482
Alignment:
Q  11 actacatcaacgacatatcacttgttcacttgtttaagaactgcaagcttctccaagaggttatcatgtttgagtgtgatggcataaccaaagcaggcat 110  Q
    ||||||||||||||| ||||||  |  |||||||||||||||| |||||||||||||||||||||||||||   |||  | ||||||||||||  |||||    
T  9411948 actacatcaacgacacatcactcttcaacttgtttaagaactgtaagcttctccaagaggttatcatgtttcgctgtcgtagcataaccaaagttggcat 9411849  T
Q  111 tttttcagctctccatgagagaccaacattgaggtctttatcctttaccgatca---cgaatcaagaaacttcgcaacgctgtttgcactcattaagaac 207  Q
    | |||| ||||||  |||||||||||| ||||||||||| ||||||||  || |    |||   | |||| | |||| | ||| || |||| ||  ||||    
T  9411848 tgtttctgctctctgtgagagaccaaccttgaggtctttgtcctttactaattattttgaaattaaaaacattgcaatgttgtatgaactcgttgggaac 9411749  T
Q  208 tatccttcacttagtgaggttaaactggaatacacatatttcacaaaaaataatatggagaagtcttattctttgatggattttgttgtaagccccaact 307  Q
    ||||||| |||||||||| ||||| |||||||| ||    | |   | | || ||| || || ||| ||||||||||| |||||| |||||| ||| | |    
T  9411748 tatcctttacttagtgagattaaaatggaatacgcaccacttagtgagattagtatagaaaattctaattctttgatgaattttgctgtaaggccccaat 9411649  T
Q  308 taaagtctctatgtttgggtcacagtttacagttaagagatgaaaacatcaaggtgttagcttccatctttcccaatttagagctgcttgatttgaaaaa 407  Q
    | ||||||||| |||||| || || ||    |||||||||| ||||||||||   ||| |||||||| || ||||||||  |||||||||||||||        
T  9411648 tgaagtctctaggtttggttcgcaatt---ggttaagagataaaaacatcaaaaggtttgcttccattttccccaatttgcagctgcttgatttgagcgg 9411552  T
Q  408 ttgctatgacatatctaaagaaggtatttttcacattttaagaagatgtcataacattagacatttgaac 477  Q
     || | | |||||||||| ||||||||||| ||  ||||||| ||||||  |||||||||||||||||||    
T  9411551 atgttgtaacatatctaacgaaggtattttgcaggttttaaggagatgtggtaacattagacatttgaac 9411482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 472 - 634
Target Start/End: Complemental strand, 9411421 - 9411259
Alignment:
Q  472 ttgaacttatcgtatacaagtgttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttacttaaaggatgtgataatg 571  Q
    |||||||| || |||||| |||||   ||||||  |||||||  ||||||||||| |||| |||||||||| |||||||||||  || | ||| ||||||    
T  9411421 ttgaacttgtcatatacaggtgttttcgatgaaatactctatgagatctcaaagaattgtcgtggacttttgcaactgttactgcaatgctgtcataatg 9411322  T
Q  572 tcacagaaaagggagtgaagcatgtggtagaaaactgcacgctactcaaagagattaatttgc 634  Q
    ||| ||| |||||||||| ||||||||||| ||| |||  || |||||||||||| |||||||    
T  9411321 tcagagataagggagtgatgcatgtggtaggaaattgcctgcaactcaaagagatcaatttgc 9411259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 472 - 604
Target Start/End: Original strand, 6585270 - 6585402
Alignment:
Q  472 ttgaacttatcgtatacaagtgttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttacttaaaggatgtgataatg 571  Q
    |||||||| ||  ||||||  |||||||||||| |||||||| |||||||||||||||||  ||  |||||  |||| ||||| ||||| ||||| ||||    
T  6585270 ttgaacttgtcagatacaaaggttgatgatgaaacactctatgtgatctcaaagagttgttctgcgcttttggaactattactgaaaggttgtgaaaatg 6585369  T
Q  572 tcacagaaaagggagtgaagcatgtggtagaaa 604  Q
    ||||||| |||||| |||| |||||||||||||    
T  6585370 tcacagagaagggactgaaacatgtggtagaaa 6585402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 493 - 633
Target Start/End: Complemental strand, 6402905 - 6402765
Alignment:
Q  493 gttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttacttaaaggatgtgataatgtcacagaaaagggagtgaagc 592  Q
    |||||||||||| |||||||| |||||||||||| |||| |||| |||||  |||| ||| | | ||  ||| ||||||||||||||||||||| ||| |    
T  6402905 gttgatgatgaaacactctatgtgatctcaaagaattgtagtgggcttttgaaactattattgagagattgttataatgtcacagaaaagggagcgaaac 6402806  T
Q  593 atgtggtagaaaactgcacgctactcaaagagattaatttg 633  Q
    ||||| |||||||||| || | ||| | ||||||| |||||    
T  6402805 atgtgatagaaaactgtacacaactgagagagatttatttg 6402765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 485 - 632
Target Start/End: Original strand, 7994228 - 7994375
Alignment:
Q  485 atacaagtgttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttacttaaaggatgtgataatgtcacagaaaaggg 584  Q
    ||||||| ||| |||| ||| |||| ||| |||||||||||| ||||  ||||||||| ||||| |||||| ||   ||| || |||| || ||  ||||    
T  7994228 atacaagggttaatgacgaaacactatatgtgatctcaaagaattgttctggacttttgcaactattacttgaactttgtaatgatgttaccgaggaggg 7994327  T
Q  585 agtgaagcatgtggtagaaaactgcacgctactcaaagagattaattt 632  Q
    |||||| |||||||||||||||||||||| ||| ||||||||| ||||    
T  7994328 agtgaaacatgtggtagaaaactgcacgcaactgaaagagatttattt 7994375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 472 - 633
Target Start/End: Complemental strand, 14820759 - 14820598
Alignment:
Q  472 ttgaacttatcgtatacaagtgttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttacttaaaggatgtgataatg 571  Q
    |||||||||||  ||||||  |||||| ||||| |||| ||||||||||| |||| |||| |||| ||||| | | | |||||| ||  |||| || |||    
T  14820759 ttgaacttatcaaatacaaaggttgataatgaaacactttatatgatctccaagaattgttgtgggcttttgcgattattacttgaaaaatgtaatgatg 14820660  T
Q  572 tcacagaaaagggagtgaagcatgtggtagaaaactgcacgctactcaaagagattaatttg 633  Q
    ||||||| ||||| ||||| ||||||||| |||||||||| |  || | |||||||||||||    
T  14820659 tcacagagaagggtgtgaaacatgtggtaaaaaactgcacacagctgagagagattaatttg 14820598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 508 - 611
Target Start/End: Complemental strand, 6415996 - 6415893
Alignment:
Q  508 ctctatatgatctcaaagagttgtggtggacttttacaactgttacttaaaggatgtgataatgtcacagaaaagggagtgaagcatgtggtagaaaact 607  Q
    |||||| |||||||||||| |||| | || ||||| ||||| |||||| ||   ||||||||||||||||||  ||||||||| ||||||||||| ||||    
T  6415996 ctctatgtgatctcaaagaattgtagcgggcttttgcaactattacttgaattttgtgataatgtcacagaagtgggagtgaaacatgtggtagagaact 6415897  T
Q  608 gcac 611  Q
    ||||    
T  6415896 gcac 6415893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 476 - 610
Target Start/End: Complemental strand, 19632501 - 19632367
Alignment:
Q  476 acttatcgtatacaagtgttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttacttaaaggatgtgataatgtcac 575  Q
    |||| ||||||||||  |||||||||||   ||| | | |||||||||||| |||| |||| ||||| ||||| ||||| |||   |||| |||| ||||    
T  19632501 acttgtcgtatacaaaggttgatgatgagcaactttttgtgatctcaaagaattgttgtgggcttttgcaactcttactgaaaaattgtgctaatatcac 19632402  T
Q  576 agaaaagggagtgaagcatgtggtagaaaactgca 610  Q
    ||| ||||||||||| || ||||||||||||||||    
T  19632401 agagaagggagtgaaacacgtggtagaaaactgca 19632367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 485 - 610
Target Start/End: Original strand, 6603248 - 6603373
Alignment:
Q  485 atacaagtgttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttacttaaaggatgtgataatgtcacagaaaaggg 584  Q
    ||||| |||||||||||||| || |||||  ||||||||||||||||  ||| |||||  |||| ||| | |||   ||| || |||||||||| || ||    
T  6603248 atacaggtgttgatgatgaaacagtctatgcgatctcaaagagttgtcctgggcttttggaactattattgaaatattgttattatgtcacagagaaagg 6603347  T
Q  585 agtgaagcatgtggtagaaaactgca 610  Q
    |||||| |||||||||||||||||||    
T  6603348 agtgaaacatgtggtagaaaactgca 6603373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 486 - 611
Target Start/End: Original strand, 11936322 - 11936447
Alignment:
Q  486 tacaagtgttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttacttaaaggatgtgataatgtcacagaaaaggga 585  Q
    |||||| ||||| ||| || ||||||||  |||||||||||||||| |||| ||||| ||||||| |||||||   |||||   ||||||||| || |||    
T  11936322 tacaagagttgacgataaatcactctattggatctcaaagagttgtagtgggcttttgcaactgtcacttaaattttgtgaaggtgtcacagacaaagga 11936421  T
Q  586 gtgaagcatgtggtagaaaactgcac 611  Q
    |||| ||||||||| ||||| |||||    
T  11936422 gtgacgcatgtggttgaaaaatgcac 11936447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 486 - 611
Target Start/End: Original strand, 11948302 - 11948427
Alignment:
Q  486 tacaagtgttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttacttaaaggatgtgataatgtcacagaaaaggga 585  Q
    |||||| ||||| ||| || ||||||||  |||||||||||||||| |||| ||||| ||||||| |||||||   |||||   ||||||||| || |||    
T  11948302 tacaagagttgacgataaatcactctattggatctcaaagagttgtagtgggcttttgcaactgtcacttaaattttgtgaaggtgtcacagacaaagga 11948401  T
Q  586 gtgaagcatgtggtagaaaactgcac 611  Q
    |||| ||||||||| ||||| |||||    
T  11948402 gtgacgcatgtggttgaaaaatgcac 11948427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 472 - 611
Target Start/End: Complemental strand, 14818448 - 14818309
Alignment:
Q  472 ttgaacttatcgtatacaagtgttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttacttaaaggatgtgataatg 571  Q
    |||||||||||  ||||||  |||||| ||||| |||| ||||||||||| |||| ||||  ||| ||||| | | | |||||| ||   ||| ||||||    
T  14818448 ttgaacttatcaaatacaaaggttgataatgaaacactttatatgatctccaagaattgttctgggcttttgcgattattacttgaaaattgtaataatg 14818349  T
Q  572 tcacagaaaagggagtgaagcatgtggtagaaaactgcac 611  Q
    ||||||| ||||| ||||| ||||| ||||||||||||||    
T  14818348 tcacagagaagggtgtgaaacatgtagtagaaaactgcac 14818309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 472 - 611
Target Start/End: Complemental strand, 6432227 - 6432088
Alignment:
Q  472 ttgaacttatcgtatacaagtgttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttacttaaaggatgtgataatg 571  Q
    |||||||| ||  ||||||| |||||||||||| |||| ||| |||||| ||||| |||| |||| ||| | ||||| || ||  |    ||||||||||    
T  6432227 ttgaacttgtcaaatacaagcgttgatgatgaaacactttatgtgatcttaaagaattgttgtgggcttctgcaactattcctgtacaattgtgataatg 6432128  T
Q  572 tcacagaaaagggagtgaagcatgtggtagaaaactgcac 611  Q
    ||||| | ||||||||||| | |||||||||||| |||||    
T  6432127 tcacacagaagggagtgaaacttgtggtagaaaaatgcac 6432088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 493 - 611
Target Start/End: Complemental strand, 7119202 - 7119084
Alignment:
Q  493 gttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttacttaaaggatgtgataatgtcacagaaaagggagtgaagc 592  Q
    |||||||||||| ||||| || ||||||| |||| |||| | || |||||  |||| ||||| ||||  ||| || |||||||| |||| | |||||| |    
T  7119202 gttgatgatgaaacactccatgtgatctcgaagaattgttgcgggcttttggaactattactgaaagattgttattatgtcacaaaaaaagaagtgaaac 7119103  T
Q  593 atgtggtagaaaactgcac 611  Q
    |||||| ||||||||||||    
T  7119102 atgtggaagaaaactgcac 7119084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 568 - 633
Target Start/End: Complemental strand, 6394834 - 6394769
Alignment:
Q  568 aatgtcacagaaaagggagtgaagcatgtggtagaaaactgcacgctactcaaagagattaatttg 633  Q
    ||||||||||||||||| ||| | |||||||||||||||||||| | | | | |||||||||||||    
T  6394834 aatgtcacagaaaagggtgtggaacatgtggtagaaaactgcacacaattgagagagattaatttg 6394769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 364 - 480
Target Start/End: Complemental strand, 7119397 - 7119284
Alignment:
Q  364 ttagcttccatctttcccaatttagagctgcttgatttgaaaaattgctatgacatatctaaagaaggtatttttcacattttaagaagatgtcataaca 463  Q
    ||||||||| | || ||||||||| | || ||||||||||| | |||| || ||||||||   |||||||||| |||  ||||||| ||||||  ||| |    
T  7119397 ttagcttcctttttccccaatttacaacttcttgatttgaatacttgcaataacatatct---gaaggtatttgtcaagttttaaggagatgttctaaga 7119301  T
Q  464 ttagacatttgaactta 480  Q
    ||| |||||||||||||    
T  7119300 ttaaacatttgaactta 7119284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 493 - 611
Target Start/End: Complemental strand, 7131680 - 7131562
Alignment:
Q  493 gttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttacttaaaggatgtgataatgtcacagaaaagggagtgaagc 592  Q
    |||||||||||| ||||| || ||||||| |||| |||| | || |||||  |||| ||||| ||||  ||| || |||||||| | || | |||||| |    
T  7131680 gttgatgatgaaacactccatgtgatctcgaagaattgttgcgggcttttggaactattactgaaagattgttattatgtcacaaacaaagcagtgaaac 7131581  T
Q  593 atgtggtagaaaactgcac 611  Q
    |||||| ||||||||||||    
T  7131580 atgtggaagaaaactgcac 7131562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 364 - 480
Target Start/End: Complemental strand, 7131875 - 7131762
Alignment:
Q  364 ttagcttccatctttcccaatttagagctgcttgatttgaaaaattgctatgacatatctaaagaaggtatttttcacattttaagaagatgtcataaca 463  Q
    ||||||||| | || ||||||||| | || ||||||||||| | |||| || ||||||||   |||||||||| |||  ||||||| ||||||  ||| |    
T  7131875 ttagcttcctttttccccaatttacaacttcttgatttgaatacttgcaataacatatct---gaaggtatttgtcaagttttaaggagatgttctaaga 7131779  T
Q  464 ttagacatttgaactta 480  Q
    ||| |||||||||||||    
T  7131778 ttaaacatttgaactta 7131762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 95 - 151
Target Start/End: Original strand, 6588601 - 6588657
Alignment:
Q  95 taaccaaagcaggcattttttcagctctccatgagagaccaacattgaggtctttat 151  Q
    ||||||| |||||||||  ||| ||||||| ||||||||||| ||||| ||||||||    
T  6588601 taaccaatgcaggcattgcttctgctctccgtgagagaccaaaattgacgtctttat 6588657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 362 - 480
Target Start/End: Original strand, 10579593 - 10579708
Alignment:
Q  362 tgttagcttccatctttcccaatttagagctgcttgatttgaaaaattgctatgacatatctaaagaaggtatttttcacattttaagaagatgtcataa 461  Q
    ||||||||||| | || ||||||||  |||||||||||||||| | |||| |  ||||||||   ||||||||||||||  ||| | ||||||||  |||    
T  10579593 tgttagcttcctttttccccaatttgcagctgcttgatttgaatacttgcgaatacatatct---gaaggtatttttcaagtttcaggaagatgtggtaa 10579689  T
Q  462 cattagacatttgaactta 480  Q
     ||||  ||||||||||||    
T  10579690 gattaagcatttgaactta 10579708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 3e-31; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 472 - 613
Target Start/End: Original strand, 41901568 - 41901709
Alignment:
Q  472 ttgaacttatcgtatacaagtgttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttacttaaaggatgtgataatg 571  Q
    |||||||| || |||||||  ||||||||||||||||| ||||||||||||||||||||| ||||||||||  || ||| |||| |||  ||| || |||    
T  41901568 ttgaacttgtcatatacaaaagttgatgatgaagcactttatatgatctcaaagagttgttgtggacttttgaaattgtcacttcaagattgtaatgatg 41901667  T
Q  572 tcacagaaaagggagtgaagcatgtggtagaaaactgcacgc 613  Q
    ||||| | ||||||||||||||||||||||||||||| ||||    
T  41901668 tcacaaagaagggagtgaagcatgtggtagaaaactgtacgc 41901709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 493 - 632
Target Start/End: Complemental strand, 32267520 - 32267381
Alignment:
Q  493 gttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttacttaaaggatgtgataatgtcacagaaaagggagtgaagc 592  Q
    ||||||||||||||||| ||||||||||||||||||||| |||| |||||  || ||| |||||||   ||| || || ||||| | |||||||||||||    
T  32267520 gttgatgatgaagcactttatatgatctcaaagagttgttgtgggcttttgaaattgtcacttaaaaattgtaatgatatcacaaagaagggagtgaagc 32267421  T
Q  593 atgtggtagaaaactgcacgctactcaaagagattaattt 632  Q
    |||| |||||||||||||||| ||| | | ||||||||||    
T  32267420 atgtagtagaaaactgcacgcaacttagaaagattaattt 32267381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 472 - 602
Target Start/End: Original strand, 41889587 - 41889717
Alignment:
Q  472 ttgaacttatcgtatacaagtgttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttacttaaaggatgtgataatg 571  Q
    ||||||||||| |||||||  |||||||||||| |||| |||| |||||||||||||||| | || ||||   || |||||||||||   ||| || |||    
T  41889587 ttgaacttatcatatacaaaagttgatgatgaaacactttataagatctcaaagagttgttgcgggctttcgaaattgttacttaaaaattgttatgatg 41889686  T
Q  572 tcacagaaaagggagtgaagcatgtggtaga 602  Q
    ||||| | ||||||||||| |||||||||||    
T  41889687 tcacaaagaagggagtgaatcatgtggtaga 41889717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 367 - 482
Target Start/End: Complemental strand, 32267712 - 32267597
Alignment:
Q  367 gcttccatctttcccaatttagagctgcttgatttgaaaaattgctatgacatatctaaagaaggtatttttcacattttaagaagatgtcataacatta 466  Q
    |||||||||||  |||||||  |||||||||||||||  ||||| | |  ||||||| ||||||||||  ||||  ||||||| | ||||  ||||||||    
T  32267712 gcttccatcttctccaatttgcagctgcttgatttgagcaattgttgtcgcatatctgaagaaggtatcgttcaatttttaaggatatgttgtaacatta 32267613  T
Q  467 gacatttgaacttatc 482  Q
    ||||||||||||||||    
T  32267612 gacatttgaacttatc 32267597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 362 - 482
Target Start/End: Original strand, 41901392 - 41901512
Alignment:
Q  362 tgttagcttccatctttcccaatttagagctgcttgatttgaaaaattgctatgacatatctaaagaaggtatttttcacattttaagaagatgtcataa 461  Q
    |||| |||||||| || ||||||||  |||||||||||||||  ||||| | |  ||||| | ||||||||||| ||||  ||||||| |  |||  |||    
T  41901392 tgttcgcttccattttccccaatttgcagctgcttgatttgagcaattgttgtcgcatatttgaagaaggtattgttcaagttttaaggatgtgttgtaa 41901491  T
Q  462 cattagacatttgaacttatc 482  Q
    |||||||||||||||||||||    
T  41901492 cattagacatttgaacttatc 41901512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 569 - 610
Target Start/End: Complemental strand, 17205568 - 17205527
Alignment:
Q  569 atgtcacagaaaagggagtgaagcatgtggtagaaaactgca 610  Q
    ||||||||||||| ||| |||| |||||||||||||||||||    
T  17205568 atgtcacagaaaaaggattgaaacatgtggtagaaaactgca 17205527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 3e-25; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 472 - 611
Target Start/End: Complemental strand, 27922574 - 27922435
Alignment:
Q  472 ttgaacttatcgtatacaagtgttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttacttaaaggatgtgataatg 571  Q
    |||||||| || ||||||| |||||||||||||||||| ||||||||||||||||||||| |||| |||||  || ||| |||| ||   ||| || ||     
T  27922574 ttgaacttgtcatatacaaatgttgatgatgaagcactttatatgatctcaaagagttgttgtgggcttttgaaattgtcacttgaaaattgtaatgatt 27922475  T
Q  572 tcacagaaaagggagtgaagcatgtggtagaaaactgcac 611  Q
    ||||| | ||||||||||| ||||||||||||||||||||    
T  27922474 tcacaaagaagggagtgaaccatgtggtagaaaactgcac 27922435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 472 - 611
Target Start/End: Original strand, 18315306 - 18315445
Alignment:
Q  472 ttgaacttatcgtatacaagtgttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttacttaaaggatgtgataatg 571  Q
    |||||||| ||  ||||||  ||||||||||||||||||||| ||||||||||||||||| || | ||||| ||||||||| |  || | |||  | |||    
T  18315306 ttgaacttgtcacatacaaaagttgatgatgaagcactctatgtgatctcaaagagttgtcgtaggcttttgcaactgttattggaacgctgttgtgatg 18315405  T
Q  572 tcacagaaaagggagtgaagcatgtggtagaaaactgcac 611  Q
    ||||||| || ||||  ||| |||||||||||||||||||    
T  18315406 tcacagagaaaggagaaaagtatgtggtagaaaactgcac 18315445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 494 - 552
Target Start/End: Complemental strand, 32151345 - 32151287
Alignment:
Q  494 ttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgtta 552  Q
    ||||||||||| |||||||| ||||||||||||||||| |||| ||||| |||||||||    
T  32151345 ttgatgatgaaacactctatgtgatctcaaagagttgtagtgggcttttgcaactgtta 32151287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 372 - 479
Target Start/End: Original strand, 34936027 - 34936134
Alignment:
Q  372 catctttcccaatttagagctgcttgatttgaaaaattgctatgacatatctaaagaaggtatttttcacattttaagaagatgtcataacattagacat 471  Q
    |||||||||||||||  | |||||||||||||   |||||  || |||||||||  ||||||||| |||  ||||||| ||||||  | |||||||||||    
T  34936027 catctttcccaatttgcatctgcttgatttgagcgattgcagtggcatatctaatcaaggtatttatcatgttttaaggagatgttgtgacattagacat 34936126  T
Q  472 ttgaactt 479  Q
    ||| ||||    
T  34936127 ttgtactt 34936134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 493 - 611
Target Start/End: Original strand, 17636455 - 17636572
Alignment:
Q  493 gttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttacttaaaggatgtgataatgtcacagaaaagggagtgaagc 592  Q
    ||||| ||||||||| | ||| |||||||||||||||||  | ||||||| ||| ||| |||| ||   |||| ||||||||| || || ||||||| ||    
T  17636455 gttgacgatgaagcattgtatgtgatctcaaagagttgtcttagacttttgcaattgtcacttgaatattgtgttaatgtcac-gagaaaggagtgaggc 17636553  T
Q  593 atgtggtagaaaactgcac 611  Q
    ||||| ||||||| |||||    
T  17636554 atgtgctagaaaattgcac 17636572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 506 - 611
Target Start/End: Original strand, 28246360 - 28246465
Alignment:
Q  506 cactctatatgatctcaaagagttgtggtggacttttacaactgttacttaaaggatgtgataatgtcacagaaaagggagtgaagcatgtggtagaaaa 605  Q
    ||||||||  |||||||||||||||| | || ||||| ||||||| |||||||   |||||   ||||||||| ||  |||||| ||||||||| |||||    
T  28246360 cactctattggatctcaaagagttgtagcgggcttttgcaactgtcacttaaattttgtgaaggtgtcacagacaaatgagtgacgcatgtggttgaaaa 28246459  T
Q  606 ctgcac 611  Q
     |||||    
T  28246460 atgcac 28246465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 3e-25; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 493 - 632
Target Start/End: Original strand, 51113835 - 51113974
Alignment:
Q  493 gttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttacttaaaggatgtgataatgtcacagaaaagggagtgaagc 592  Q
    |||||||||||| |||||||| ||||||| ||||||||| |||| ||||| ||||||||||| |||   ||| |  |||||||||| |||||||||||||    
T  51113835 gttgatgatgaaacactctatgtgatctcgaagagttgttgtgggcttttgcaactgttactgaaaaattgttaccatgtcacagagaagggagtgaagc 51113934  T
Q  593 atgtggtagaaaactgcacgctactcaaagagattaattt 632  Q
    ||||||||||||| |||||   ||| | ||||||||||||    
T  51113935 atgtggtagaaaaatgcacaaaactaagagagattaattt 51113974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 472 - 611
Target Start/End: Original strand, 13470765 - 13470904
Alignment:
Q  472 ttgaacttatcgtatacaagtgttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttacttaaaggatgtgataatg 571  Q
    |||||||| ||  ||||||  ||| ||||| || ||||||||||||||||||||| |||| |||| ||||| ||||| |||||| ||   ||| ||||||    
T  13470765 ttgaacttgtcaaatacaaaggttaatgataaaacactctatatgatctcaaagaattgttgtgggcttttgcaactattacttgaactttgtcataatg 13470864  T
Q  572 tcacagaaaagggagtgaagcatgtggtagaaaactgcac 611  Q
    |||||||| |||||||||| ||||||||||| ||||||||    
T  13470865 tcacagaagagggagtgaaacatgtggtagagaactgcac 13470904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 37 - 161
Target Start/End: Original strand, 513939 - 514063
Alignment:
Q  37 cacttgtttaagaactgcaagcttctccaagaggttatcatgtttgagtgtgatggcataaccaaagcaggcattttttcagctctccatgagagaccaa 136  Q
    |||||||| || ||||| |||||||| |||||||||||||| ||| | || ||| |||||||||||  ||| |||  ||| ||||||| |||||||||||    
T  513939 cacttgttcaaaaactgtaagcttcttcaagaggttatcatctttaattgcgatcgcataaccaaacaaggtattgcttctgctctccgtgagagaccaa 514038  T
Q  137 cattgaggtctttatcctttaccga 161  Q
    ||||||  ||| |||||||| ||||    
T  514039 cattgacctctatatccttttccga 514063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 472 - 611
Target Start/End: Original strand, 51120926 - 51121065
Alignment:
Q  472 ttgaacttatcgtatacaagtgttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttacttaaaggatgtgataatg 571  Q
    |||||||| ||| ||||||| ||||||||||||  ||| ||| | ||||||||||||||| |||| ||||| ||| |||  ||  || | |||    |||    
T  51120926 ttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtgggcttttgcaattgtctctagaaagctgtttgtatg 51121025  T
Q  572 tcacagaaaagggagtgaagcatgtggtagaaaactgcac 611  Q
    ||||| |||| |||||||| ||||||||||||||||||||    
T  51121026 tcacacaaaaaggagtgaaacatgtggtagaaaactgcac 51121065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 49 - 156
Target Start/End: Original strand, 51763672 - 51763779
Alignment:
Q  49 aactgcaagcttctccaagaggttatcatgtttgagtgtgatggcataaccaaagcaggcattttttcagctctccatgagagaccaacattgaggtctt 148  Q
    ||||| |||||||||||||| || ||||||||||| ||||||   |||||||| |||||  |   ||| ||||||| ||| ||||||||||||| |||||    
T  51763672 aactgtaagcttctccaagatgtcatcatgtttgactgtgatcaaataaccaatgcaggagtcacttctgctctccgtgaaagaccaacattgacgtctt 51763771  T
Q  149 tatccttt 156  Q
    ||||||||    
T  51763772 tatccttt 51763779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 493 - 611
Target Start/End: Original strand, 51764494 - 51764612
Alignment:
Q  493 gttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttacttaaaggatgtgataatgtcacagaaaagggagtgaagc 592  Q
    ||||||||| || ||||||||  ||||||||||| |||| | || ||||| ||||| |||||  ||   |||||||||||||  || ||||||||||| |    
T  51764494 gttgatgataaaacactctatgcgatctcaaagaattgttgcgggcttttgcaactattactggaacattgtgataatgtcaaggagaagggagtgaaac 51764593  T
Q  593 atgtggtagaaaactgcac 611  Q
    ||||||| |||||||||||    
T  51764594 atgtggttgaaaactgcac 51764612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 382 - 476
Target Start/End: Complemental strand, 1657472 - 1657378
Alignment:
Q  382 aatttagagctgcttgatttgaaaaattgctatgacatatctaaagaaggtatttttcacattttaagaagatgtcataacattagacatttgaa 476  Q
    |||||| |||| ||||||||||   ||||| | ||||||||| ||||||||||| ||||  ||||||  | ||||  ||||||||||||||||||    
T  1657472 aatttacagctacttgatttgagccattgcaaagacatatctgaagaaggtattgttcatgttttaatgatatgttgtaacattagacatttgaa 1657378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 2e-23; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 493 - 633
Target Start/End: Original strand, 45245139 - 45245279
Alignment:
Q  493 gttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttacttaaaggatgtgataatgtcacagaaaagggagtgaagc 592  Q
    |||||||||||| ||||| || ||||||||||||||||| |||| ||||| ||||| ||| | |||  |||| || |||||||||| ||||||||||| |    
T  45245139 gttgatgatgaaacactccatgtgatctcaaagagttgtcgtgggcttttgcaactattattgaaaaaatgttatcatgtcacagataagggagtgaaac 45245238  T
Q  593 atgtggtagaaaactgcacgctactcaaagagattaatttg 633  Q
    ||||||||||||| ||||| | ||| | |||||| ||||||    
T  45245239 atgtggtagaaaattgcacacaacttacagagatcaatttg 45245279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 485 - 611
Target Start/End: Original strand, 1037710 - 1037836
Alignment:
Q  485 atacaagtgttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttacttaaaggatgtgataatgtcacagaaaaggg 584  Q
    ||||| |||||||||||||| ||||||||||||||||||||| |||| |||| |||||||||||||| ||  ||   |||||| | |||||||| || ||    
T  1037710 atacatgtgttgatgatgaaacactctatatgatctcaaagaattgttgtgggcttttacaactgtttctggaaaattgtgatgaagtcacagagaatgg 1037809  T
Q  585 agtgaagcatgtggtagaaaactgcac 611  Q
     ||||| ||||| || |||||||||||    
T  1037810 tgtgaaacatgtagtcgaaaactgcac 1037836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 275 - 450
Target Start/End: Original strand, 32785542 - 32785717
Alignment:
Q  275 attctttgatggattttgttgtaagccccaacttaaagtctctatgtttgggtcacagtttacagttaagagatgaaaacatcaaggtgttagcttccat 374  Q
    |||||||||||||||||||||||| |||  | ||||||| |||   ||||| || || ||    |||||||||||||| ||||| | ||||  |||| ||    
T  32785542 attctttgatggattttgttgtaatccctcaattaaagtttctccatttggctcgcaattattggttaagagatgaaagcatcaggatgttttcttctat 32785641  T
Q  375 ctttcccaatttagagctgcttgatttgaaaaattgctatgacatatctaaagaaggtatttttcacattttaaga 450  Q
     ||| |||||||  | || ||||||||||   |||||||| |||||||| |||||||||||| |||  ||||||||    
T  32785642 tttttccaatttgcaactacttgatttgagctattgctataacatatctgaagaaggtatttgtcaatttttaaga 32785717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 7e-20; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 497 - 611
Target Start/End: Complemental strand, 546954 - 546840
Alignment:
Q  497 atgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttacttaaaggatgtgataatgtcacagaaaagggagtgaagcatgt 596  Q
    |||||||| |||||||| ||||||||||||||||| |||| |||||  || |||||||  ||| ||||  | |||||||||| ||||||||||| |||||    
T  546954 atgatgaaacactctatgtgatctcaaagagttgttgtgggcttttggaattgttactggaagaatgttttcatgtcacagagaagggagtgaaacatgt 546855  T
Q  597 ggtagaaaactgcac 611  Q
    | |||||||||||||    
T  546854 gctagaaaactgcac 546840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 485 - 611
Target Start/End: Original strand, 55908774 - 55908900
Alignment:
Q  485 atacaagtgttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttacttaaaggatgtgataatgtcacagaaaaggg 584  Q
    ||||| |||||||||||||| ||||||||||||||||||||| |||| |||| |||||||||||||| ||  ||   |||||| | |||||||| || ||    
T  55908774 atacatgtgttgatgatgaaacactctatatgatctcaaagaattgttgtgggcttttacaactgtttctggaaaattgtgatgaagtcacagagaatgg 55908873  T
Q  585 agtgaagcatgtggtagaaaactgcac 611  Q
     ||||| ||||| || |||||||||||    
T  55908874 tgtgaaacatgtagtcgaaaactgcac 55908900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 11 - 162
Target Start/End: Original strand, 8186594 - 8186745
Alignment:
Q  11 actacatcaacgacatatcacttgttcacttgtttaagaactgcaagcttctccaagaggttatcatgtttgagtgtgatggcataaccaaagcaggcat 110  Q
    |||| |||||||||| ||  ||| |||||||||| ||||| || |||| |||| ||||||||||||||||| |||||  |    ||||||||||||||||    
T  8186594 actatatcaacgacaaattgctttttcacttgttaaagaattgtaagcatctcgaagaggttatcatgtttaagtgttctcagttaaccaaagcaggcat 8186693  T
Q  111 tttttcagctctccatgagagaccaacattgaggtctttatcctttaccgat 162  Q
    |  ||| || ||    ||||||||||| ||||||||||||||||||||||||    
T  8186694 tgcttctgccctatgggagagaccaacgttgaggtctttatcctttaccgat 8186745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 37 - 156
Target Start/End: Original strand, 21833568 - 21833687
Alignment:
Q  37 cacttgtttaagaactgcaagcttctccaagaggttatcatgtttgagtgtgatggcataaccaaagcaggcattttttcagctctccatgagagaccaa 136  Q
    |||||| | ||||| || ||||||||  ||||||| ||||||||||| ||||||   |||| || || |||||||  ||||||||||| |||||||||||    
T  21833568 cacttgctaaagaattgtaagcttcttgaagaggtcatcatgtttgattgtgatcaaataagcagagaaggcattgcttcagctctccgtgagagaccaa 21833667  T
Q  137 cattgaggtctttatccttt 156  Q
    ||||||| ||||||||||||    
T  21833668 cattgagttctttatccttt 21833687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 486 - 552
Target Start/End: Original strand, 1524533 - 1524599
Alignment:
Q  486 tacaagtgttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgtta 552  Q
    ||||||||||||||||||| ||||||||||||||||| |||||||| |||| ||||| |||||||||    
T  1524533 tacaagtgttgatgatgaaacactctatatgatctcacagagttgtcgtgggcttttgcaactgtta 1524599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 472 - 633
Target Start/End: Original strand, 1548457 - 1548618
Alignment:
Q  472 ttgaacttatcgtatacaagtgttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttacttaaaggatgtgataatg 571  Q
    |||||||| ||  |||||||| ||||||||||| ||||| || ||||||||||||||||| |||| ||||| ||  ||||||  ||| | ||| | |||     
T  1548457 ttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgttgtgggcttttgcacttgttacaaaaacgttgtaaaaata 1548556  T
Q  572 tcacagaaaagggagtgaagcatgtggtagaaaactgcacgctactcaaagagattaatttg 633  Q
    ||||||| ||||||||||| ||| | | |||||||||| ||| ||| | ||| |||||||||    
T  1548557 tcacagagaagggagtgaaacatatagaagaaaactgctcgcaactgagagaaattaatttg 1548618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 472 - 656
Target Start/End: Original strand, 1513440 - 1513621
Alignment:
Q  472 ttgaacttatcgtatacaagtgttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttacttaaaggatgtgataatg 571  Q
    |||||||| || | ||||| ||||||||||||| |||||||  | ||||||||| ||||| |||| ||||| |||||  |||| ||||| ||   || ||    
T  1513440 ttgaacttgtcatttacaaatgttgatgatgaaacactctacgtaatctcaaagtgttgtcgtgggcttttgcaactcatactgaaaggttg---tattg 1513536  T
Q  572 tcacagaaaagggagtgaagcatgtggtagaaaactgcacgctactcaaagagattaatttgcagaattgtggtaaagtgaatgg 656  Q
    ||||||| | ||||||||||| |||| ||||||| ||||| | ||| | |||||| |||||| |  |||||  ||||||||||||    
T  1513537 tcacagagatgggagtgaagcttgtgctagaaaaatgcacacaactgagagagatcaatttgaaatattgttctaaagtgaatgg 1513621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 472 - 651
Target Start/End: Original strand, 8184063 - 8184242
Alignment:
Q  472 ttgaacttatcgtatacaagtgttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttacttaaaggatgtgataatg 571  Q
    |||||||| ||  ||||||| |||||||||  ||||||||||   ||||||||||||||| |||| |||||  ||||||||||  ||   ||||| ||||    
T  8184063 ttgaacttgtcacatacaagagttgatgatatagcactctatgcaatctcaaagagttgttgtgggcttttggaactgttactggaaaattgtga-aatg 8184161  T
Q  572 -tcacagaaaagggagtgaagcatgtggtagaaaactgcacgctactcaaagagattaatttgcagaattgtggtaaagtg 651  Q
     |||||||  ||||||||||||||||| ||||||| ||||| | ||| |||| ||| ||||||  ||| |||| |||||||    
T  8184162 atcacagatgagggagtgaagcatgtgctagaaaattgcacacaactgaaagtgatcaatttgaggaactgtgataaagtg 8184242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 38 - 156
Target Start/End: Complemental strand, 1601300 - 1601179
Alignment:
Q  38 acttgtttaagaactgcaagcttctccaagaggttatcatgtttgagtgtgatggcataaccaaagcaggcattttt---tcagctctccatgagagacc 134  Q
    ||||||||||||||| ||||| |||  ||||||| |||||| | || ||| |||| |||||| | || | |||| ||   || ||||||| |||||||||    
T  1601300 acttgtttaagaacttcaagcatcttgaagaggtcatcatgctcgactgttatggaataaccgatgctgacattgttgcttctgctctccgtgagagacc 1601201  T
Q  135 aacattgaggtctttatccttt 156  Q
    ||||||||||||||||||||||    
T  1601200 aacattgaggtctttatccttt 1601179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 472 - 610
Target Start/End: Complemental strand, 640981 - 640843
Alignment:
Q  472 ttgaacttatcgtatacaagtgttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttacttaaaggatgtgataatg 571  Q
    |||||||| ||  ||||||  |||||||||||| |||||||  ||| |||||||| |||  |||| ||||| || ||||||||  |||  ||| || |||    
T  640981 ttgaacttgtcagatacaaacgttgatgatgaaacactctacgtgacctcaaagaattgccgtggtcttttgcatctgttactggaagattgtcattatg 640882  T
Q  572 tcacagaaaagggagtgaagcatgtggtagaaaactgca 610  Q
    | ||| | ||||||||||| |||||||||||||||||||    
T  640881 taacaaagaagggagtgaatcatgtggtagaaaactgca 640843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 472 - 613
Target Start/End: Complemental strand, 7307926 - 7307785
Alignment:
Q  472 ttgaacttatcgtatacaagtgttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttacttaaaggatgtgataatg 571  Q
    |||||||| || ||||||   |||||||||||||||||   ||||||||||||||||||| || | ||||| || ||||||||  |||| |||  || ||    
T  7307926 ttgaacttgtcatatacagaagttgatgatgaagcactacgtatgatctcaaagagttgttgtaggcttttgcacctgttactggaaggttgttttattg 7307827  T
Q  572 tcacagaaaagggagtgaagcatgtggtagaaaactgcacgc 613  Q
    ||||    |  ||| |||||||||||||||||||||||||||    
T  7307826 tcacgatgactggattgaagcatgtggtagaaaactgcacgc 7307785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 362 - 480
Target Start/End: Complemental strand, 1600664 - 1600546
Alignment:
Q  362 tgttagcttccatctttcccaatttagagctgcttgatttgaaaaattgctatgacatatctaaagaaggtatttttcacattttaagaagatgtcataa 461  Q
    |||| |||||||  |||||||||||  | |||||||||||||  | ||||  | |||||||| |||||||||||| |||  ||||||| |||| |  |||    
T  1600664 tgtttgcttccaattttcccaatttgcaactgcttgatttgagcagttgcattaacatatctgaagaaggtatttgtcaagttttaaggagattttctaa 1600565  T
Q  462 cattagacatttgaactta 480  Q
     ||||||||||||||||||    
T  1600564 aattagacatttgaactta 1600546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 494 - 611
Target Start/End: Complemental strand, 558542 - 558425
Alignment:
Q  494 ttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttacttaaaggatgtgataatgtcacagaaaagggagtgaagca 593  Q
    ||||||||||||||||| || ||||||||||||||||| |||| |||||  ||||||  ||| ||   |||  |   || ||||| || |||||||||||    
T  558542 ttgatgatgaagcactccatgtgatctcaaagagttgtcgtgggcttttggaactgtatcttcaattttgtatttgcgttacagataaaggagtgaagca 558443  T
Q  594 tgtggtagaaaactgcac 611  Q
    |||| |||||||||||||    
T  558442 tgtgctagaaaactgcac 558425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 159
Target Start/End: Original strand, 7225501 - 7225534
Alignment:
Q  126 tgagagaccaacattgaggtctttatcctttacc 159  Q
    ||||||||||||||||||||||||||||||||||    
T  7225501 tgagagaccaacattgaggtctttatcctttacc 7225534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 562 - 611
Target Start/End: Original strand, 53761892 - 53761941
Alignment:
Q  562 tgtgataatgtcacagaaaagggagtgaagcatgtggtagaaaactgcac 611  Q
    |||||||||||||| || ||||||||||| ||||||| ||||||||||||    
T  53761892 tgtgataatgtcacggacaagggagtgaaacatgtggaagaaaactgcac 53761941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 533 - 605
Target Start/End: Original strand, 1489455 - 1489527
Alignment:
Q  533 gtggacttttacaactgttacttaaaggatgtgataatgtcacagaaaagggagtgaagcatgtggtagaaaa 605  Q
    |||| ||||| ||||| |||||  |||| |||  |||||||||||| |||||||||||||||||| |||||||    
T  1489455 gtgggcttttgcaactcttactggaagggtgttttaatgtcacagagaagggagtgaagcatgtgctagaaaa 1489527  T

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Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 126 - 158
Target Start/End: Original strand, 8183638 - 8183670
Alignment:
Q  126 tgagagaccaacattgaggtctttatcctttac 158  Q
    |||||||||||||||||||||||||||||||||    
T  8183638 tgagagaccaacattgaggtctttatcctttac 8183670  T

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Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 472 - 551
Target Start/End: Complemental strand, 553545 - 553466
Alignment:
Q  472 ttgaacttatcgtatacaagtgttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgtt 551  Q
    |||||||| || | |||||| |||||||||||||||||  || |||| ||||||||||||  ||| ||||| ||||||||    
T  553545 ttgaacttgtcatttacaagagttgatgatgaagcacttaatgtgatttcaaagagttgttctgggcttttgcaactgtt 553466  T

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Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 472 - 555
Target Start/End: Complemental strand, 570417 - 570334
Alignment:
Q  472 ttgaacttatcgtatacaagtgttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttactt 555  Q
    |||||||| || |||||| | |||||| | |||| ||||||| |||| |||||||||||| | || ||||| ||||||||||||    
T  570417 ttgaacttgtcatatacaggagttgataacgaagaactctatctgatttcaaagagttgtcgcgggcttttgcaactgttactt 570334  T

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Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 156
Target Start/End: Complemental strand, 7308349 - 7308230
Alignment:
Q  37 cacttgtttaagaactgcaagcttctccaagaggttatcatgtttgagtgtgatggcataaccaaagcaggcattttttcagctctccatgagagaccaa 136  Q
    |||||||||||||| || ||||||||  ||||||  ||||| || || ||| ||    ||||||| |||||||||  | | ||||| |||||||||||||    
T  7308349 cacttgtttaagaattgtaagcttctggaagaggccatcatattagactgtcatcaactaaccaacgcaggcattgctactgctctacatgagagaccaa 7308250  T
Q  137 cattgaggtctttatccttt 156  Q
    ||||| | ||||||||||||    
T  7308249 cattgcgctctttatccttt 7308230  T

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Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 472 - 611
Target Start/End: Original strand, 12121490 - 12121629
Alignment:
Q  472 ttgaacttatcgtatacaagtgttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttacttaaaggatgtgataatg 571  Q
    |||||||| || ||||||| ||||||||||||| ||||||   | ||||||||| ||||  |||| ||||| ||||| | |||  || | ||   |  ||    
T  12121490 ttgaacttgtcatatacaaatgttgatgatgaaacactctccgtaatctcaaagtgttgccgtgggcttttgcaactctcactggaatggtgcttttttg 12121589  T
Q  572 tcacagaaaagggagtgaagcatgtggtagaaaactgcac 611  Q
    ||||||| | |||||||||||||||||||||||| |||||    
T  12121590 tcacagagatgggagtgaagcatgtggtagaaaaatgcac 12121629  T

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Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 569 - 611
Target Start/End: Complemental strand, 553448 - 553406
Alignment:
Q  569 atgtcacagaaaagggagtgaagcatgtggtagaaaactgcac 611  Q
    |||||||||| || |||||||| ||||||||||||||||||||    
T  553448 atgtcacagataaaggagtgaatcatgtggtagaaaactgcac 553406  T

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Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 362 - 436
Target Start/End: Original strand, 8186945 - 8187019
Alignment:
Q  362 tgttagcttccatctttcccaatttagagctgcttgatttgaaaaattgctatgacatatctaaagaaggtattt 436  Q
    ||||| ||||| | || ||||||||  || ||||||||||||   ||||||||||||||||| ||||||||||||    
T  8186945 tgttatcttccttattccccaatttgcagttgcttgatttgagtcattgctatgacatatctgaagaaggtattt 8187019  T

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Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 569 - 633
Target Start/End: Original strand, 1524613 - 1524677
Alignment:
Q  569 atgtcacagaaaagggagtgaagcatgtggtagaaaactgcacgctactcaaagagattaatttg 633  Q
    |||||||||| | |||||||||  ||||| ||||||||||||| | ||| | |||||||||||||    
T  1524613 atgtcacagagaggggagtgaattatgtgatagaaaactgcacacaactgagagagattaatttg 1524677  T

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Target: scaffold0295 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold0295
Description:

Target: scaffold0295; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 485 - 611
Target Start/End: Original strand, 670 - 796
Alignment:
Q  485 atacaagtgttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttacttaaaggatgtgataatgtcacagaaaaggg 584  Q
    |||||||||| ||||||||| |||||||||||||||| |||| |||| |||| || ||||||||||||||  ||   |||||| | |||| ||| || ||    
T  670 atacaagtgtcgatgatgaaacactctatatgatctcgaagaattgttgtgggctattacaactgttactggaaaattgtgatgaagtcatagagaatgg 769  T
Q  585 agtgaagcatgtggtagaaaactgcac 611  Q
     ||||| ||||| ||||||||||||||    
T  770 tgtgaaacatgtagtagaaaactgcac 796  T

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Target: chr7 (Bit Score: 46; Significance: 7e-17; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 497 - 634
Target Start/End: Original strand, 15092209 - 15092346
Alignment:
Q  497 atgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttacttaaaggatgtgataatgtcacagaaaagggagtgaagcatgt 596  Q
    ||||| || ||||||||  ||||||||||| |||| |||| ||||| ||||| |||||| ||   ||| ||||||||||||||  ||||||||| |||||    
T  15092209 atgataaaacactctatgcgatctcaaagaattgttgtgggcttttgcaactattacttgaattttgttataatgtcacagaagtgggagtgaaacatgt 15092308  T
Q  597 ggtagaaaactgcacgctactcaaagagattaatttgc 634  Q
    | ||||||||||||| | | | | ||||||||||||||    
T  15092309 gctagaaaactgcacacaattgagagagattaatttgc 15092346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 497 - 610
Target Start/End: Complemental strand, 10614634 - 10614521
Alignment:
Q  497 atgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttacttaaaggatgtgataatgtcacagaaaagggagtgaagcatgt 596  Q
    ||||| || |||||||| ||||||| ||||  ||| |||| ||||| ||||| |||||| ||   | | |||||||||||||| | |||||||| |||||    
T  10614634 atgataaaacactctatgtgatctcgaagaactgtagtgggcttttgcaactattacttgaactttctcataatgtcacagaagaaggagtgaaacatgt 10614535  T
Q  597 ggtagaaaactgca 610  Q
    ||||||||||||||    
T  10614534 ggtagaaaactgca 10614521  T

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Target: scaffold0014 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 424 - 480
Target Start/End: Complemental strand, 88999 - 88943
Alignment:
Q  424 aaagaaggtatttttcacattttaagaagatgtcataacattagacatttgaactta 480  Q
    ||||||||||||  ||| |||||||| ||||||  ||| ||||||||||||||||||    
T  88999 aaagaaggtattgatcagattttaaggagatgttgtaagattagacatttgaactta 88943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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